Clone Sequence Records
BS01623.3prime Sequence
934 bp (925 high quality bases) assembled on 2005-11-30
> BS01623.3prime
ATGGTCTAGAAAGCTTCGCTAGTTGGACGAATTGTCGCCAGGCTCACTGA
CCGCAATTGTCATCTTCACTTCATCGCCACTGTCTAGTTCTGGATCCTCG
TCATCCTCCTCATCCTCGCAATCATCCATATCGTCCTCGTCGAGCTCCTC
GTCTTCGTCGTCCTCTTCGGTCAATTCATCATCCTCCTCGTCGTCCTCAT
CATCGCCGAAACTATCACCCCCGCCGCTGGCCTCCACAGTCGGCAGCTGA
ACGATCGTGGCCCCGCCCGGCGTCACAGTTGAGCCTGCAACCGTGGCCGC
CACACTGGAGGCTCCACTGCCCGCCGCCGCTGAACCGCCGCCCGGAATCT
CAATCGTCACAATGCCGTTCACCGTGCTAATGCTTTTCGGTGCATTGCCA
CCCTTGGTCTCCTGCTTGATGCTCAGCTCAATTAGCTCCACGCCAGAGCG
GCTCTTAAAGTGCGTCTTGATGTGCTTCGACAGGTGATCGCTGCGCATGA
ACTTTTTGTTGCACTCCTGGCACTGGAAACGCTTCTCTCCCGTGTGCGTT
CGTCGGTGGCGCTGCAGTTCATCGGAGCGGGTGAAGCGCTTGCCGCAAAA
CGCCCAGGAGCAGACAAATGGTCGCTCGCCAGTATGCCAACGCAGGTGAG
CCCTTAGATGGGAAGTTTTCCCGTATACCTTATGGCAGCCGGTTATATGG
CATATATGCTGGCGCTTCTTGTCCGAGTGTTTTTCGCCATCTGTACAATT
GGGACAGGTGCAGGCTACTCGCTTTAAGCGTGGTTTGGGCTCTCCAGTCG
CTGTTCCACCGCCGCCGCCAGTTGCAGCACCTCCGACGCTGGCCACACTT
ATGTTCATATTGAGATGGCTTTGTGACGGCGTTGTTATAGTCGTCGTGCT
GGTGTTCGTGCTCCTTATGCTGGCAGTTGCTCCC
BS01623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5669-PA | 2907 | CG5669-RA | 1992..2907 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-RB | 3490 | CG5669-RB | 2271..3187 | 934..18 | 4585 | 100 | Minus |
| Spps-RA | 3490 | CG5669-RA | 2271..3187 | 934..18 | 4585 | 100 | Minus |
| Sp1-RF | 3593 | CG1343-RF | 2096..2317 | 681..460 | 315 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24223748..24224664 | 18..934 | 4585 | 100 | Plus |
| X | 23542271 | X | 9754301..9754522 | 681..460 | 300 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:40:39 has no hits.
BS01623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:53 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-PA | 1992..2907 | 19..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:59 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-PA | 1992..2907 | 19..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:32 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 2271..3187 | 18..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:24 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 2271..3187 | 18..934 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:24 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24223748..24224664 | 18..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:32 Download gff for
BS01623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20049470..20050386 | 18..934 | 100 | | Plus |
BS01623.5prime Sequence
874 bp (827 high quality bases) assembled on 2005-11-30
> BS01623.5prime
GAAGTTATCAGTCGACATGCTGCAGTACAAGAGTGCCGCCAGTGCGGCGA
CTAGTGCGCCACCCGCCACGCCTTTGGCGGCAGGCGGTTCCAGCAAGGCG
ACGATTCCACCAAATGGAGCTAGTGCAGCAGCTTCACAAACGCAGGTTCA
CGGTGCTCCCGGGACACCAACCATGCAGCAGATCATCAACATTCACCAAA
TGCCTCCTCAGTTTGCAGGCGGAGCGGTTGCCGGGAACGGACAGAACGCT
GGCATGCCCCAAAACATGTTCCAGATCGTACAGCCCATGCCCATGCAAAC
GGTGAACATTGATGGCCAGGAGGCCATCTTCATACCAAACCTCAATGCAC
AACTGGCCACCGCTCAGGCGGTCAACTTCAACGGGCAACAGGCCTTTATC
ACGCCCAACGGTCAAATTCTGCGGGCTCCCCAGATGGCAGCTAATCCGGC
AGCCTCTAACTGCATTCAGCTGCAACAGCTGAACGGCTTGGGCCAGGAGC
AAACCCAGCTGATCACCATACCCGGCACCAACATTCAAATACCCGTCACC
AATCTCATTCAGCAACAACAGCAGGCACAACAAGTGCACCAGGGTACAGT
GCAACAGCAGGCACAAGGAACAAATGCATCTGGAGCCAATGGATCGGGAG
TTACCAATAGTGGGACAGCGGGTCAGCTGCCGGGCAGCATCACCATACCG
GGCACAAACCTGCAGATACCAACCTCGGTAGCGGCGGCGAATGGATTGCT
GGGAAACATCTCCAATATCTCCAATTTACTAGGCGGCGGGCAATCTATAA
AGTTGGAGAACGGCCAATTGCAGATGCGGCCGCAACTGGTGCAGTTTCCG
GCGCCAGCCATGCCGCAGCAGCAA
BS01623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5669-PA | 2907 | CG5669-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-RB | 3490 | CG5669-RB | 279..1137 | 16..874 | 4295 | 100 | Plus |
| Spps-RA | 3490 | CG5669-RA | 279..1137 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24225798..24226656 | 874..16 | 4295 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6859 | 493..638 | 145 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6902 | 560..697 | 144 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1587 | 525..630 | 117 | 60.7 | Plus |
BS01623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:54 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:22:00 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:16:09 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 279..1135 | 16..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:27 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 279..1135 | 16..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:27 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24225800..24226656 | 16..872 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:16:09 Download gff for
BS01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20051522..20052378 | 16..872 | 100 | | Minus |
BS01623.complete Sequence
2941 bp (2941 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ638767
> BS01623.complete
GAAGTTATCAGTCGACATGCTGCAGTACAAGAGTGCCGCCAGTGCGGCGA
CTAGTGCGCCACCCGCCACGCCTTTGGCGGCAGGCGGTTCCAGCAAGGCG
ACGATTCCACCAAATGGAGCTAGTGCAGCAGCTTCACAAACGCAGGTTCA
CGGTGCTCCCGGGACACCAACCATGCAGCAGATCATCAACATTCACCAAA
TGCCTCCTCAGTTTGCAGGCGGAGCGGTTGCCGGGAACGGACAGAACGCT
GGCATGCCCCAAAACATGTTCCAGATCGTACAGCCCATGCCCATGCAAAC
GGTGAACATTGATGGCCAGGAGGCCATCTTCATACCAAACCTCAATGCAC
AACTGGCCACCGCTCAGGCGGTCAACTTCAACGGGCAACAGGCCTTTATC
ACGCCCAACGGTCAAATTCTGCGGGCTCCCCAGATGGCAGCTAATCCGGC
AGCCTCTAACTGCATTCAGCTGCAACAGCTGAACGGCTTGGGCCAGGAGC
AAACCCAGCTGATCACCATACCCGGCACCAACATTCAAATACCCGTCACC
AATCTCATTCAGCAACAACAGCAGGCACAACAAGTGCACCAGGGTACAGT
GCAACAGCAGGCACAAGGAACAAATGCATCTGGAGCCAATGGATCGGGAG
TTACCAATAGTGGGACAGCGGGTCAGCTGCCGGGCAGCATCACCATACCG
GGCACAAACCTGCAGATACCAACCTCGGTAGCGGCGGCGAATGGATTGCT
GGGAAACATCTCCAATATCTCCAATTTACTAGGCGGCGGGCAATCTATAA
AGTTGGAGAACGGCCAATTGCAGATGCGGCCGCAACTGGTGCAGTTTCCG
GCGCCAGCCATGCCGCAGCAGCAACAAACGGTTGCTGTGCAGATTCCCGT
TCAGACTGCTAACGGACAGACCATCTACCAGACTGTACATGTGCCCGTCC
AGGCAGCGGCAACATCGAGCGGCGGACTGCAAAACCTGATGCAGGCGCAA
TCCCTGCAGATGCCCTCCGCCTCGCAGATGCAAATCATCCCGCAGTTCTC
ACAGATAGCCCAGATTGTTACGCCCAACGGTCAGATTCAGCAGGTGCAAC
TGGCAATGCCGTATCCTCAGCTGCCTCCGAATGCCAACATTATACATATC
CAGAATCCCCACCAGCAGCAGCAACAACAAGTACAACAACAACAACAGCA
GCAGCAGGCGCAACAGCAGCAGCAAGCGCAACAGCAACAGGCACAGCAGC
AGCAACAACAACAGGTCCAGGCGCAGCACCAGCAGCTCCTTCAGGCGATC
AGCGATGCCTCGGCGGGGGGACAACTGCCGCCCAATCAGCCCATCACCAT
TACCAATGCCCAGGGCCAACAGCTGACCGTGATTCCCGCCCAACTACGCC
CAAATGCGCCTACCGCACCCACTCCTGCTCCAGCTGGTGTGCCCACACCA
ATGCAGATGCCCAATCTTCAGGCTTTACCCATCCAGAACATCCCAGGCCT
GGGTCAAGTGCAAATCATTCACGCCAATCAGCTGCCTCCTAATCTGCCAG
CCAACTTCCAGCAAGTACTAACCCAACTACCCATGTCGCATCCTCAAGTG
CAAACTCAGGGCCAAGTTCAGGTGATGCCCAAGCAGGAGCCGCAGAGTCC
AACGCAAATGATCACCAGCATCAAGCAAGAGCCGCCGGATACCTTTGGAC
CCATTTCCGCAACTGGTAATCCTCCGGCACCTGCCTCTACTCCAAACACA
GCCTCACCGCAACAGCAGCAGATCAAGTTCCTGCATACGGAAAGCAATTC
CCTGTCCAGCCTGAGCATACCAGCCTCCATTCAGATCACAGCCCTGCCAC
AGCAAGCGACGAATACACCGAATACCCCAGCCACAACCCAACCAATTCCC
GTATCGTTACCTGCAAGAAGTAAGGTCAACGCTGTGACCACGTCAAGCAC
CCAGATTACAATTGCGCCGACTGGTGGCCAAGTGGTGTCCGTCACGACGC
AGGCTAGGGGAGCAACTGCCAGCATAAGGAGCACGAACACCAGCACGACG
ACTATAACAACGCCGTCACAAAGCCATCTCAATATGAACATAAGTGTGGC
CAGCGTCGGAGGTGCTGCAACTGGCGGCGGCGGTGGAACAGCGACTGGAG
AGCCCAAACCACGCTTAAAGCGAGTAGCCTGCACCTGTCCCAATTGTACA
GATGGCGAAAAACACTCGGACAAGAAGCGCCAGCATATATGCCATATAAC
CGGCTGCCATAAGGTATACGGGAAAACTTCCCATCTAAGGGCTCACCTGC
GTTGGCATACTGGCGAGCGACCATTTGTCTGCTCCTGGGCGTTTTGCGGC
AAGCGCTTCACCCGCTCCGATGAACTGCAGCGCCACCGACGAACGCACAC
GGGAGAGAAGCGTTTCCAGTGCCAGGAGTGCAACAAAAAGTTCATGCGCA
GCGATCACCTGTCGAAGCACATCAAGACGCACTTTAAGAGCCGCTCTGGC
GTGGAGCTAATTGAGCTGAGCATCAAGCAGGAGACCAAGGGTGGCAATGC
ACCGAAAAGCATTAGCACGGTGAACGGCATTGTGACGATTGAGATTCCGG
GCGGCGGTTCAGCGGCGGCGGGCAGTGGAGCCTCCAGTGTGGCGGCCACG
GTTGCAGGCTCAACTGTGACGCCGGGCGGGGCCACGATCGTTCAGCTGCC
GACTGTGGAGGCCAGCGGCGGGGGTGATAGTTTCGGCGATGATGAGGACG
ACGAGGAGGATGATGAATTGACCGAAGAGGACGACGAAGACGAGGAGCTC
GACGAGGACGATATGGATGATTGCGAGGATGAGGAGGATGACGAGGATCC
AGAACTAGACAGTGGCGATGAAGTGAAGATGACAATTGCGGTCAGTGAGC
CTGGCGACAATTCGTCCAACTAGCGAAGCTTTCTAGACCAT
BS01623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-RB | 2958 | CG5669-PB | 1..2908 | 17..2924 | 14540 | 100 | Plus |
| Spps-RA | 2907 | CG5669-PA | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| Sp1-RF | 2181 | CG1343-PF | 1180..1401 | 2261..2482 | 300 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-RB | 3490 | CG5669-RB | 279..3187 | 16..2924 | 14545 | 100 | Plus |
| Spps-RA | 3490 | CG5669-RA | 279..3187 | 16..2924 | 14545 | 100 | Plus |
| Sp1-RF | 3593 | CG1343-RF | 2096..2317 | 2261..2482 | 300 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24223748..24226656 | 2924..16 | 14545 | 100 | Minus |
| X | 23542271 | X | 9754301..9754522 | 2261..2482 | 300 | 75.7 | Plus |
Blast to na_te.dros performed 2014-11-27 07:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6859 | 493..638 | 145 | 60.5 | Plus |
BS01623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:02 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-RA | 1..2907 | 17..2923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:11 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-RA | 282..3190 | 16..2924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:46 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 280..3187 | 17..2925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:02 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-RA | 282..3190 | 16..2924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:13 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 280..3187 | 17..2925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:13 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24223747..24226655 | 17..2925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:46 Download gff for
BS01623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20049469..20052377 | 17..2925 | 99 | | Minus |
BS01623.pep Sequence
Translation from 16 to 2922
> BS01623.pep
MLQYKSAASAATSAPPATPLAAGGSSKATIPPNGASAAASQTQVHGAPGT
PTMQQIINIHQMPPQFAGGAVAGNGQNAGMPQNMFQIVQPMPMQTVNIDG
QEAIFIPNLNAQLATAQAVNFNGQQAFITPNGQILRAPQMAANPAASNCI
QLQQLNGLGQEQTQLITIPGTNIQIPVTNLIQQQQQAQQVHQGTVQQQAQ
GTNASGANGSGVTNSGTAGQLPGSITIPGTNLQIPTSVAAANGLLGNISN
ISNLLGGGQSIKLENGQLQMRPQLVQFPAPAMPQQQQTVAVQIPVQTANG
QTIYQTVHVPVQAAATSSGGLQNLMQAQSLQMPSASQMQIIPQFSQIAQI
VTPNGQIQQVQLAMPYPQLPPNANIIHIQNPHQQQQQQVQQQQQQQQAQQ
QQQAQQQQAQQQQQQQVQAQHQQLLQAISDASAGGQLPPNQPITITNAQG
QQLTVIPAQLRPNAPTAPTPAPAGVPTPMQMPNLQALPIQNIPGLGQVQI
IHANQLPPNLPANFQQVLTQLPMSHPQVQTQGQVQVMPKQEPQSPTQMIT
SIKQEPPDTFGPISATGNPPAPASTPNTASPQQQQIKFLHTESNSLSSLS
IPASIQITALPQQATNTPNTPATTQPIPVSLPARSKVNAVTTSSTQITIA
PTGGQVVSVTTQARGATASIRSTNTSTTTITTPSQSHLNMNISVASVGGA
ATGGGGGTATGEPKPRLKRVACTCPNCTDGEKHSDKKRQHICHITGCHKV
YGKTSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHTGEKRF
QCQECNKKFMRSDHLSKHIKTHFKSRSGVELIELSIKQETKGGNAPKSIS
TVNGIVTIEIPGGGSAAAGSGASSVAATVAGSTVTPGGATIVQLPTVEAS
GGGDSFGDDEDDEEDDELTEEDDEDEELDEDDMDDCEDEEDDEDPELDSG
DEVKMTIAVSEPGDNSSN*
BS01623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-PB | 985 | CG5669-PB | 1..968 | 1..968 | 4987 | 100 | Plus |
| Spps-PA | 968 | CG5669-PA | 1..968 | 1..968 | 4987 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 124..351 | 681..889 | 501 | 46.5 | Plus |
| Sp1-PD | 715 | CG1343-PD | 319..546 | 681..889 | 501 | 46.5 | Plus |
| Sp1-PE | 720 | CG1343-PE | 324..551 | 681..889 | 501 | 46.5 | Plus |
| Sp1-PB | 520 | CG1343-PB | 405..485 | 360..440 | 165 | 45.7 | Plus |
| Sp1-PD | 715 | CG1343-PD | 600..680 | 360..440 | 165 | 45.7 | Plus |
