Clone Sequence Records
BS01628.3prime Sequence
944 bp (846 high quality bases) assembled on 2005-11-30
> BS01628.3prime
ATGGTCTAGAAAGCTTCGCTAGTCGGTCTTTGTCTCCGTAAACTCCTCCA
GGGCAAAAAAGCTGCCGCCGGAGGGGCCACCAGTGCTGCTGGCCGTGCTC
GTGGCAACAACGGTGGTGGATGCCGTGCCACTAGATGCCTCCGACACTTG
CACTTCCTCGCCGGCCGAGTCGGCAGCCGCCTCCTTGTCATCTGCACCTC
CGGAAGCGCTGGCTGCCTGCTGTGCGGCCTCCAGGACCTGTTGCTGAACC
TGGACGATGGGCTGGCCATCTTCCGTGTACGACACGGACACTGGGATGCG
GGTACCATCCTCGCTAATGACATGAGCGCCTTCCTCACCATCCTGTCCCT
GCTGGATAATTAACTGCCCCTCGGAGTTCAACAGGGAGGCATCGATAAGC
TGCTGTTCATTGTTGTCACCATGGACAAGTACCATCTGGCCACTGCCATC
GGTCATCATCTGGAGGGTTTCGCCCTCAAGTCCCTCGCCGGACTGCAGAA
CTCCTACACTTTGGAGCAGCTGCTGTATTTGCTCGGGATCTTGCACAATT
ATTTGGTTGCCTTCGGCGTCCGTCAGGATGTGGTTGTCCAGCTGGAGGAG
ATGGCCGTTCTCGTTAACAATGAACTTGATCTGGCCACCTTCCACCTGTG
CCTGCATGGCTTCGTCAAGTTCCATGGCAACATGCTCGCCACCTGCAGCT
TCACCCGCCTCGCCCTCGGCTCCAGTACTGGCAGTAACCTCGCCTTCGCC
AGATTCACCGGCTTCAGCGGTCGTGGCATTGGCCTCCGACTCAGTTGTGG
GCGTATCTGTAGCCTCACGCTTAGCAACTACGTCTCCTTCGTCAGATGGT
TGTGGTTCCTCAGCAGCGGCGGCTTCCTTTGACTTGNCGCTTTCTCCAGC
CTTTGGCTTGGCTTTCTCTTGACCTGCTTTGCTAGCCGTCTTGG
BS01628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7752-PA | 2991 | Z4-RA | 2066..2991 | 944..19 | 4561 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-RB | 3824 | CG7752-RB | 2404..3329 | 944..19 | 4589 | 99.7 | Minus |
| pzg-RA | 4093 | CG7752-RA | 2404..3329 | 944..19 | 4589 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21288562..21289487 | 944..19 | 4589 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:33:21 has no hits.
BS01628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:11:58 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:22:05 Download gff for
BS01628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7752-PA | 2066..2991 | 19..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:50 Download gff for
BS01628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 2404..3333 | 11..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:40 Download gff for
BS01628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 2404..3333 | 11..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:40 Download gff for
BS01628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21288562..21289491 | 11..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:50 Download gff for
BS01628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21281662..21282591 | 11..944 | 99 | | Minus |
BS01628.5prime Sequence
830 bp (829 high quality bases) assembled on 2005-11-30
> BS01628.5prime
GAAGTTATCAGTCGACATGAACAACCAACTGAATCCGGCCACCTACCGCA
AGTTTAACAATCTGCTCAGTAGCGGAGCGGTCACTGTGACCGGTCCCAGC
CAGCCGCGAATCCTCAAGTCGACGCGTATGGTGGTACCCGGTGGTGGCGG
AGGAGGAGGTGCCTCTGCCGGAGGAGCCTCAGCCGTTGGCGGCGTAGCAC
AGCAGCAGGCGGTCAACGATGCAGAGTCGGGTGGCGTGGGTATCGGCGGA
TTAGCCACGCGATGCTATATCTGCGATGACCGCTGCGAGCCACAGACTTC
GCTAACCGATATGTGCACCACGCACACTTCCACCAAATTCCCCAACAAAC
TGGCCCAGCTCGTGGGCGAGGGTTTCCTCGTGATTGTTTGCGGCGAGGAT
TACGTGTGCTCACGCTGTACCAACCTGGTGAACTACTACGACCGCCTGGA
AAACGATGTGGAGCGCGTCAAGACGAACCTCATCAGTTTGCTTAACAAGA
AGTATGCCATTAACGAGGATATGGGCCAGGAAGGCAGTCCGCCGCTCAAG
ATGCAGAAAATGGTCGGCGGATCCGCCAATCGCTCGTTGGAGGAGAGTCC
TAGTGCGGATTTGCTGCGTCCACGTAAACTCCTGCAGGGAAACCCAGTTG
GCCAGTCCAAGATCGCCCCAGGAACCACCCAGAGCAGCGTCCAAGGCACC
CAGACAGTCCAACGCAAGGCCACCAAGATTTATAAATGCACCTCGTGTGA
CTATAAAACCTCGGATATGCGGCTGTTCAACACGCATTATGAAACCTGCA
AGCAGCAGACCTTCCAGTGCAAGACCTGCC
BS01628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7752-PA | 2991 | Z4-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-RB | 3824 | CG7752-RB | 335..1152 | 13..830 | 4075 | 99.9 | Plus |
| pzg-RA | 4093 | CG7752-RA | 335..1152 | 13..830 | 4075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21286433..21287067 | 13..647 | 3160 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21287125..21287310 | 645..830 | 930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 577..643 | 394..328 | 110 | 62.7 | Minus |
BS01628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:11:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:22:07 Download gff for
BS01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7752-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:07:04 Download gff for
BS01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 333..1152 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:00 Download gff for
BS01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 333..1152 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:00 Download gff for
BS01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21286431..21287067 | 9..647 | 99 | -> | Plus |
| 3L | 21287128..21287310 | 648..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:07:04 Download gff for
BS01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21279531..21280167 | 9..647 | 99 | -> | Plus |
| arm_3L | 21280228..21280410 | 648..830 | 100 | | Plus |
BS01628.complete Sequence
3025 bp (3025 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634659
> BS01628.complete
GAAGTTATCAGTCGACATGAACAACCAACTGAATCCGGCCACCTACCGCA
AGTTTAACAATCTGCTCAGTAGCGGAGCGGTCACTGTGACCGGTCCCAGC
CAGCCGCGAATCCTCAAGTCGACGCGTATGGTGGTACCCGGTGGTGGCGG
AGGAGGAGGTGCCTCTGCCGGAGGAGCCTCAGCCGTTGGCGGCGTAGCAC
AGCAGCAGGCGGTCAACGATGCAGAGTCGGGTGGCGTGGGTATCGGCGGA
TTAGCCACGCGATGCTATATCTGCGATGACCGCTGCGAGCCACAGACTTC
GCTAACCGATATGTGCACCACGCACACTTCCACCAAATTCCCCAACAAAC
TGGCCCAGCTCGTGGGCGAGGGTTTCCTCGTGATTGTTTGCGGCGAGGAT
TACGTGTGCTCACGCTGTACCAACCTGGTGAACTACTACGACCGCCTGGA
AAACGATGTGGAGCGCGTCAAGACGAACCTCATCAGTTTGCTTAACAAGA
AGTATGCCATTAACGAGGATATGGGCCAGGAAGGCAGTCCGCCGCTCAAG
ATGCAGAAAATGGTCGGCGGATCCGCCAATCGCTCGTTGGAGGAGAGTCC
TAGTGCGGATTTGCTGCGTCCACGTAAACTCCTGCAGGGAAACCCAGTTG
GCCAGTCCAAGATCGCCCCAGGAACCACCCAGAGCAGCGTCCAAGGCACC
CAGACAGTCCAACGCAAGGCCACCAAGATTTATAAATGCACCTCGTGTGA
CTATAAAACCTCGGATATGCGGCTGTTCAACACGCATTATGAAACCTGCA
AGCAGCAGACCTTCCAGTGCAAGACCTGCCGCAAAATCTTCCCGCACTTT
GGGGCCATGAAGCAGCACATGGTGCGCGACCACAATACCGCCATGGATAA
CACGTGTGCCATGTGTCACATTAACTTCGTGAACGAGAACAGCCTGCGCA
AGCACATGGAGACGAATCACGCTACCAATGTACTGGTGACCAGCACCACC
ACCATACCGGCATCAGCTGCTCCCGTGGCTGCTGCTGCAGCTGCCGCTGC
AGCTGCTGCCAACGAGAATCTGGTTGGAACATCGCTATACACATGCAATC
ATTGCCAGTTCAAGTCAACGGACAAGGTCGTTTTTGATGAGCATATGCGC
AAGCATGCCGCTGGTAAACCTAAGCCTTTTAAGTGCCGCCTGTGCTCTCA
GCGCTTTGAGACGCGCGAAGCTGCTACTGTGCATGCCAAACAGCATCAGA
CCAACTTCTTCAAGTGCGGCACTTGTTCGATGACCTTCCCGAAACGGGAG
ATGCTTGTTAAGCACTTCGAAGTGCATCAGAGTCCTTCCGCATCGACGGT
ATCGCCCAAGCAGTCAGTTAGCCAGAACCTGAACACCCAGAAGCTCCTTC
AAGAGACCATTGATGAGGCACTGAGCGATAGCCTGCCTGCTTCGACAGCT
GCTGTGGTGGCAACCACCGAGTCGGAGAACAACATACGCTTCTTCTCGTG
CAGCATTTGCTCACTGACTTTCATCCAGGAGACATACTACAACCACCACA
TGGAGACCCACAGACGTGACAAGAAGGCAACTTCGGCCGGAGCCACTGCC
CTAAATTCGGCAGCTACGGCTTTACTAAGCGATGAGCCCGGAGAGGCAAC
TGGTAAGGCCGGTGACGAGAGCGGCGAGCAAAACGCAGAGGCCGACATTG
AGAGCCTGTTTGAAAAGCTCCACTCCGACAAGAACGAGAGCGGTGAGGCG
CCCAAACCGGGAAGCAAAGGCGGCGAGATGGTTATTACCTCGCAGGAGGG
CAGTGGAGGCATAACCTTCAACATTACTATCCCGCAACCGGACGGAGACC
AATCGCAAAAGGATTCGCCCAATACCACAGCACCTGTCTCTGTTAGCATT
GACATGCCAAATTTGGATCAAGCCGAAGACGAATCACAGTCCCAGGGCAG
CATCGATGCCAAGGGCGAAAGCGGCGAGGCCTCCTCTGCCGATAGCAAAT
CCAATGCCGCACCGGTTTCCATGCCCAGTTTAGATGATGACAACGAGGCT
GCAGCTGCTGAAGCTGAGGCCTCAGAGGAAACCAAGACGGCTAGCAAAGC
AGGTCAAGAGAAAGCCAAGGCCAAGGCTGGAGAAAGCGCCAAGTCAAAGG
AAGCCGCCGCTGCTGAGGAACCACAACCATCTGACGAAGGAGACGTAGTT
GCTAAGCGTGAGGCTACAGATACGCCCACAACTGAGTCGGAGGCCAATGC
CACGACCGCTGAAGCCGGTGAATCTGGCGAAGGCGAGGTTACTGCCAGTA
CTGGAGCCGAGGGCGAGGCGGGTGAAGCTGCAGGTGGCGAGCATGTTGCC
ATGGAACTTGACGAAGCCATGCAGGCACAGGTGGAAGGTGGCCAGATCAA
GTTCATTGTTAACGAGAACGGCCATCTCCTCCAGCTGGACAACCACATCC
TGACGGACGCCGAAGGCAACCAAATAATTGTGCAAGATCCCGAGCAAATA
CAGCAGCTGCTCCAAAGTGTAGGAGTTCTGCAGTCCGGCGAGGGACTTGA
GGGCGAAACCCTCCAGATGATGACCGATGGCAGTGGCCAGATGGTACTTG
TCCATGGTGACAACAATGAACAGCAGCTTATCGATGCCTCCCTGTTGAAC
TCCGAGGGGCAGTTAATTATCCAGCAGGGACAGGATGGTGAGGAAGGCGC
TCATGTCATTAGCGAGGATGGTACCCGCATCCCAGTGTCCGTGTCGTACA
CGGAAGATGGCCAGCCCATCGTCCAGGTTCAGCAACAGGTCCTGGAGGCC
GCACAGCAGGCAGCCAGCGCTTCCGGAGGTGCAGATGACAAGGAGGCGGC
TGCCGACTCGGCCGGCGAGGAAGTGCAAGTGTCGGAGGCATCTAGTGGCA
CGGCATCCACCACCGTTGTTGCCACGAGCACGGCCAGCAGCACTGGTGGC
CCCTCCGGCGGCAGCTTTTTTGCCCTGGAGGAGTTTACGGAGACAAAGAC
CGACTAGCGAAGCTTTCTAGACCAT
BS01628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-RB | 2991 | CG7752-PB | 1..2991 | 17..3007 | 14955 | 100 | Plus |
| pzg-RA | 2991 | CG7752-PA | 1..2991 | 17..3007 | 14955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-RB | 3824 | CG7752-RB | 335..3329 | 13..3007 | 14960 | 100 | Plus |
| pzg-RA | 4093 | CG7752-RA | 335..3329 | 13..3007 | 14960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21287125..21289487 | 645..3007 | 11815 | 100 | Plus |
| 3L | 28110227 | 3L | 21286433..21287067 | 13..647 | 3160 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:11:58 has no hits.
BS01628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:55 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z4-RA | 1..2991 | 17..3007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:03 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 369..3369 | 9..3015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:58 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 339..3330 | 17..3009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:55 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z4-RA | 369..3369 | 9..3015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:16 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 339..3330 | 17..3009 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:16 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21286437..21287067 | 17..647 | 100 | -> | Plus |
| 3L | 21287128..21289488 | 648..3009 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:58 Download gff for
BS01628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21279537..21280167 | 17..647 | 100 | -> | Plus |
| arm_3L | 21280228..21282588 | 648..3009 | 99 | | Plus |
BS01628.pep Sequence
Translation from 16 to 3006
> BS01628.pep
MNNQLNPATYRKFNNLLSSGAVTVTGPSQPRILKSTRMVVPGGGGGGGAS
AGGASAVGGVAQQQAVNDAESGGVGIGGLATRCYICDDRCEPQTSLTDMC
TTHTSTKFPNKLAQLVGEGFLVIVCGEDYVCSRCTNLVNYYDRLENDVER
VKTNLISLLNKKYAINEDMGQEGSPPLKMQKMVGGSANRSLEESPSADLL
RPRKLLQGNPVGQSKIAPGTTQSSVQGTQTVQRKATKIYKCTSCDYKTSD
MRLFNTHYETCKQQTFQCKTCRKIFPHFGAMKQHMVRDHNTAMDNTCAMC
HINFVNENSLRKHMETNHATNVLVTSTTTIPASAAPVAAAAAAAAAAANE
NLVGTSLYTCNHCQFKSTDKVVFDEHMRKHAAGKPKPFKCRLCSQRFETR
EAATVHAKQHQTNFFKCGTCSMTFPKREMLVKHFEVHQSPSASTVSPKQS
VSQNLNTQKLLQETIDEALSDSLPASTAAVVATTESENNIRFFSCSICSL
TFIQETYYNHHMETHRRDKKATSAGATALNSAATALLSDEPGEATGKAGD
ESGEQNAEADIESLFEKLHSDKNESGEAPKPGSKGGEMVITSQEGSGGIT
FNITIPQPDGDQSQKDSPNTTAPVSVSIDMPNLDQAEDESQSQGSIDAKG
ESGEASSADSKSNAAPVSMPSLDDDNEAAAAEAEASEETKTASKAGQEKA
KAKAGESAKSKEAAAAEEPQPSDEGDVVAKREATDTPTTESEANATTAEA
GESGEGEVTASTGAEGEAGEAAGGEHVAMELDEAMQAQVEGGQIKFIVNE
NGHLLQLDNHILTDAEGNQIIVQDPEQIQQLLQSVGVLQSGEGLEGETLQ
MMTDGSGQMVLVHGDNNEQQLIDASLLNSEGQLIIQQGQDGEEGAHVISE
DGTRIPVSVSYTEDGQPIVQVQQQVLEAAQQAASASGGADDKEAAADSAG
EEVQVSEASSGTASTTVVATSTASSTGGPSGGSFFALEEFTETKTD*
BS01628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-PB | 996 | CG7752-PB | 1..996 | 1..996 | 5095 | 100 | Plus |
| pzg-PA | 996 | CG7752-PA | 1..996 | 1..996 | 5095 | 100 | Plus |
| CG5245-PA | 501 | CG5245-PA | 76..358 | 233..519 | 222 | 23.8 | Plus |
| CG12299-PA | 736 | CG12299-PA | 212..548 | 195..488 | 221 | 22.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 147..470 | 221..519 | 196 | 23 | Plus |
| CG10959-PB | 441 | CG10959-PB | 189..390 | 229..437 | 196 | 24.1 | Plus |
