Clone Sequence Records
BS01629.3prime Sequence
771 bp (770 high quality bases) assembled on 2005-11-30
> BS01629.3prime
ATGGTCTAGAAAGCTTCGTTAAACACCGAGTATGTCATTGTGATCCTCCG
CGGGATCCACTGGCTCTCGCTTAAGGTTGTCCAGCGAAAAATCATCCGCA
GCAATAGTGGCTGCTGTCTCCGAGGATTCAATTTTATTTCTCTGCACCGT
CTGACTGGCCTGCTGAAGAAGGTCCTGAAAGGAGGTTTTGGTATTAGCCA
CCACCAAGCTGCGCTTCAGCGCCGAGGTAGGCGAACTTTCTTCGCCGTTT
ACAGAGGCCGTTGCAGCGGGCTTGGGCTGGGCAAAGTCATTGAAGGCAGA
TCCTTGCACACTGGCAATCTGCGGAGTTTTCTGAAGCAGGGAGGCACCGC
CAGTGGGTGAGATTTGCTTTTGGTAAGCAGGAACGCAGCCCACAGACTTC
CTCACTAGTAAACTGCTGCCTTGCGATGCAGTGGTCATTTGACTAGCACC
TACGGCAGAATACCGAGGGCGTTGGGTAGGTGGCACCATTCCATGCCCAG
CTGCTATCAATCGCCGCTTAAGCATAGACGCTTCCATAGCGCTAGCATTG
GAGTTTATGGTGCTGCCATTGGCGGAACCTTGGCTAGCGTTTTGGGCATT
GGGTGGATTGCTGCTACCGCACACGGAATACCTCCTGGACATGGCGCGGA
TATTCTCGGAGGCAGCTCCCTTGGCCGTCGTCGGTCCATTGCCTTGTCCA
AAGAAACTGTTGATCAATGAACCCTGCGGCCTTATAGCAGCCACTACAGC
AGCTCCTTTGGGACTGCCTGT
BS01629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3836-PA | 3114 | stwl-RA | 2362..3114 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 4233 | CG3836-RC | 2539..3291 | 771..19 | 3765 | 100 | Minus |
| stwl-RB | 3429 | CG3836-RB | 2315..3067 | 771..19 | 3765 | 100 | Minus |
| stwl-RA | 3653 | CG3836-RA | 2539..3291 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14403872..14404624 | 19..771 | 3765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:08:19 has no hits.
BS01629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:12:00 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-PA | 2362..3114 | 19..771 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:22:09 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3836-PA | 2362..3114 | 19..771 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:40:45 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 2539..3293 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:37:41 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 2539..3293 | 16..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:37:41 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14403870..14404624 | 16..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:40:45 Download gff for
BS01629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14396970..14397724 | 16..771 | 99 | | Plus |
BS01629.5prime Sequence
793 bp (715 high quality bases) assembled on 2005-11-30
> BS01629.5prime
GAAGTTATCAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGC
TGCGGTCAGTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAAC
TATAGGAAGCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGA
AGTTGGAGAGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAA
ATGACTATACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGC
CAGCGTCGTTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCG
CCATCTAAACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTAT
CATCGGACAAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCAT
CATGCTCAGGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGT
TAAGGAGGTCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAG
ACAAGAGAGAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAG
AAAAGTGCTGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGA
GAAGGTTCCTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACG
AGTGCATGGACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGAC
TTGGAACAATCGAATCAGGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGA
GAAGAATAACACCGACTCAACTGTTAGCCAGCCGGAGTTCTTT
BS01629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3836-PA | 3114 | stwl-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 4233 | CG3836-RC | 178..954 | 17..793 | 3885 | 100 | Plus |
| stwl-RA | 3653 | CG3836-RA | 178..954 | 17..793 | 3885 | 100 | Plus |
| stwl-RB | 3429 | CG3836-RB | 102..730 | 165..793 | 3145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14406209..14406838 | 793..164 | 3150 | 100 | Minus |
| 3L | 28110227 | 3L | 14409615..14409762 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:00 has no hits.
BS01629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:12:01 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:22:10 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3836-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:09 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 174..954 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:59 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 174..954 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:59 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14406209..14406837 | 165..793 | 100 | <- | Minus |
| 3L | 14409615..14409766 | 10..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:09 Download gff for
BS01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14399309..14399937 | 165..793 | 100 | <- | Minus |
| arm_3L | 14402715..14402866 | 10..164 | 98 | | Minus |
BS01629.complete Sequence
3148 bp assembled on 2009-02-12
> BS01629.complete
GAAGTTATCAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGC
TGCGGTCAGTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAAC
TATAGGAAGCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGA
AGTTGGAGAGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAA
ATGACTATACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGC
CAGCGTCGTTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCG
CCATCTAAACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTAT
CATCGGACAAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCAT
CATGCTCAGGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGT
TAAGGAGGTCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAG
ACAAGAGAGAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAG
AAAAGTGCTGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGA
GAAGGTTCCTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACG
AGTGCATGGACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGAC
TTGGAACAATCGAATCAGGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGA
GAAGAATAACACCGACTCAACTGTTAGCCAGCCGGAGTTCTTTGTCAAGC
AAACCAGAGATCCTCGTTTGCTAATTATTGGCAGAAAGAATTCGACGTCT
TCGTTTGCTGAATCCAAGGCTTCAAAATCTATTTCCGGGGATCCTCTGGA
AACGGCTATGGAAGATAGTGGCGATGAATATGGTAGGGATGGTGAAAAAC
GCGTCACAGGCAGCGACACTACTTCTCCAACCCGACGTCCACGTCGCGCA
GCCCGTGCATCAATAAGTTTCGCTGGCATAAGGGATTTACCGATCCAGAA
ACCAGGCCAAGCACAACGAATGACGCGATTGCAGCGCAGGAAATCTATGA
GTTTAGCGGCTGTACACAGTGTAAGGAGCTCCACATCGCCTGTGAAAATG
ACTCCAGTCCCCAGGTCTCAGCCGATCAACAAGCCGCCATCCGGGCCAGT
CCAGATCACGAAAATCAGTCATCGGGATGACATCTTCCCGAGACCTGCGG
TGCCATCTGGAGTTGTGAATATAAATCAAAACCAACTCAAGACTCAACAA
CAGCAGAAGACGCTGATCTTTCCGACGACCGATGAAGCGATCGCTAACCC
GCAGGGATCTGGTCCACCACAAAGGAGGTCCGTGGGTAGGCCGCCCAAGA
AGCTACCTATGGTGCAGCGAATAGTTGCGCCGGAAACGCAGACCAAGCCA
CAGTCGCCCATAAACACCAAAGTCCTGACCATTGGCAAGCCCACCAGCTC
CGTCGCGAGTGGTAACATAAATAATATTGCTATCAAAAGCAACGTCGTTA
CTAGCATAAGCAGCAGCACCGCTACTACTAATACCATTACCAAAGGTACC
AGTAACAACAGCATCAAAACTACTGAAAACGTTAATGTAATAAGCTACAG
TCCGAATTCATCTAGCACCAGCAGCAGCAGCAAGGCCACCACTGGTGCCT
CTGGTGCGGTGATAACTAATATACCCACAACCACCACAGCTGGAACATCC
GTTCCGGTCGGAAAGAGTATAACCCAATTGAAAATGACTGAGCGAGGCAC
TCAAACCGGAGTCCAGAATCCTTTCTCCGATAATTACTTTCTCGAAATGA
TCAAGCCCCAGATGCAGGAAATGAACCCCCGTCAGAAGATGCACTTTAAG
AAGAAAGTATTCCAAGCGCTGATGGAAACCTTTGATGATGCTACCGATTT
CCCAACGTCTAAAGAACTGCAGCATTTTAATATAAACACTCCTTCAGGAT
TTGAGCACATTACAGATCCGGAACTTCGATTGGTCAGGGAGCTAGTCAGC
ATGGTGAGCGCGGCTAAGGTTACCCTAATTAGACCGCCAGGAGAAGCTAC
AGCTATAGCTACAGCTTCCCGCAGTGGAATTGCTCCTGAGGTACAGCGAG
GACCCCGAACAAATATGACACGCCAAGTCATTCAGAGGGTATACAAGCCA
GGCACTGGACAAGAGATCGCCCCCACCAGCCCGGCGGGTGGACTAGATAA
GAGGTTGTTCAGGTTAGCGGCTATGGGTGGTAAACCGAATGGCAACTTGA
GTGCCACTCAGGAAATTTTGCGCAAGGATAGTGTTGACAGTAACCATAGT
GTGGTCAAGGTGGCCAACCACGCCCCAACAGGCAGTCCCAAAGGAGCTGC
TGTAGTGGCTGCTATAAGGCCGCAGGGTTCATTGATCAACAGTTTCTTTG
GACAAGGCAATGGACCGACGACGGCCAAGGGAGCTGCCTCCGAGAATATC
CGCGCCATGTCCAGGAGGTATTCCGTGTGCGGTAGCAGCAATCCACCCAA
TGCCCAAAACGCTAGCCAAGGTTCCGCCAATGGCAGCACCATAAACTCCA
ATGCTAGCGCTATGGAAGCGTCTATGCTTAAGCGGCGATTGATAGCAGCT
GGGCATGGAATGGTGCCACCTACCCAACGCCCTCGGTATTCTGCCGTAGG
TGCTAGTCAAATGACCACTGCATCGCAAGGCAGCAGTTTACTAGTGAGGA
AGTCTGTGGGCTGCGTTCCTGCTTACCAAAAGCAAATCTCACCCACTGGC
GGTGCCTCCCTGCTTCAGAAAACTCCGCAGATTGCCAGTGTGCAAGGATC
TGCCTTCAATGACTTTGCCCAGCCCAAGCCCGCTGCAACGGCCTCTGTAA
ACGGCGAAGAAAGTTCGCCTACCTCGGCGCTGAAGCGCAGCTTGGTGGTG
GCTAATACCAAAACCTCCTTTCAGGACCTTCTTCAGCAGGCCAGTCAGAC
GGTGCAGAGAAATAAAATTGAATCCTCGGAGACAGCAGCCACTATTGCTG
CGGATGATTTTTCGCTGGACAACCTTAAGCGAGAGCCAGTGGATCCCGCG
GAGGATCACAATGACATACTCGGTGTTTAACGAAGCTTTCTAGACCAT
BS01629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 3114 | CG3836-PC | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| stwl-RA | 3114 | CG3836-PA | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| stwl-RB | 3000 | CG3836-PB | 35..3000 | 165..3130 | 14830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 4233 | CG3836-RC | 178..3291 | 17..3130 | 15570 | 100 | Plus |
| stwl-RA | 3653 | CG3836-RA | 178..3291 | 17..3130 | 15570 | 100 | Plus |
| stwl-RB | 3429 | CG3836-RB | 102..3067 | 165..3130 | 14830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14403872..14406838 | 3130..164 | 14835 | 100 | Minus |
| 3L | 28110227 | 3L | 14409615..14409762 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2480 | 1530..1695 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6927 | 1553..1744 | 157 | 57.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7119..7204 | 1268..1354 | 126 | 65.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8592..8657 | 1288..1354 | 125 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6828 | 1581..1691 | 123 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2428 | 1556..1691 | 119 | 58.1 | Plus |
BS01629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:30 Download gff for
BS01629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 162..3276 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:33 Download gff for
BS01629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 178..3292 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:58 Download gff for
BS01629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 178..3292 | 17..3132 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:58 Download gff for
BS01629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14403871..14406837 | 165..3132 | 99 | <- | Minus |
| 3L | 14409615..14409762 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:33 Download gff for
BS01629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14402715..14402862 | 17..164 | 100 | | Minus |
| arm_3L | 14396971..14399937 | 165..3132 | 99 | <- | Minus |
BS01629.pep Sequence
Translation from 16 to 3129
> BS01629.pep
MSAASEVNLMLLRSVEKQTALYDRTDENYRKRLPSENAWDMVASEVGESV
EKCKRRWRQLRNDYTRWCNADANRRRNGQRRLAYPLADELRFLDRHLNIA
DDMAADDDRSVSSDKDRDNNRDSEGVDHHAQASLKERASSTSKLVKEVKL
ASQVRKEKSSQDKRENWENPGDKQRSRKKSAEEKLNDLEESDEPEKVPEL
DSFLQSDNEDDECMDEEHLEDLEGFDFDLEQSNQEKELTPEKSLEKNNTD
STVSQPEFFVKQTRDPRLLIIGRKNSTSSFAESKASKSISGDPLETAMED
SGDEYGRDGEKRVTGSDTTSPTRRPRRAARASISFAGIRDLPIQKPGQAQ
RMTRLQRRKSMSLAAVHSVRSSTSPVKMTPVPRSQPINKPPSGPVQITKI
SHRDDIFPRPAVPSGVVNINQNQLKTQQQQKTLIFPTTDEAIANPQGSGP
PQRRSVGRPPKKLPMVQRIVAPETQTKPQSPINTKVLTIGKPTSSVASGN
INNIAIKSNVVTSISSSTATTNTITKGTSNNSIKTTENVNVISYSPNSSS
TSSSSKATTGASGAVITNIPTTTTAGTSVPVGKSITQLKMTERGTQTGVQ
NPFSDNYFLEMIKPQMQEMNPRQKMHFKKKVFQALMETFDDATDFPTSKE
LQHFNINTPSGFEHITDPELRLVRELVSMVSAAKVTLIRPPGEATAIATA
SRSGIAPEVQRGPRTNMTRQVIQRVYKPGTGQEIAPTSPAGGLDKRLFRL
AAMGGKPNGNLSATQEILRKDSVDSNHSVVKVANHAPTGSPKGAAVVAAI
RPQGSLINSFFGQGNGPTTAKGAASENIRAMSRRYSVCGSSNPPNAQNAS
QGSANGSTINSNASAMEASMLKRRLIAAGHGMVPPTQRPRYSAVGASQMT
TASQGSSLLVRKSVGCVPAYQKQISPTGGASLLQKTPQIASVQGSAFNDF
AQPKPAATASVNGEESSPTSALKRSLVVANTKTSFQDLLQQASQTVQRNK
IESSETAATIAADDFSLDNLKREPVDPAEDHNDILGV*
BS01629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-PC | 1037 | CG3836-PC | 1..1037 | 1..1037 | 5249 | 100 | Plus |
| stwl-PA | 1037 | CG3836-PA | 1..1037 | 1..1037 | 5249 | 100 | Plus |
| stwl-PB | 999 | CG3836-PB | 12..999 | 50..1037 | 5002 | 99.9 | Plus |
| CG3919-PB | 302 | CG3919-PB | 17..212 | 7..228 | 158 | 23 | Plus |
