Clone BS01810 Report

Search the DGRC for BS01810

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:18
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG10366-RA
Protein status:BS01810.pep: full length peptide match
Sequenced Size:1769

Clone Sequence Records

BS01810.5prime Sequence

813 bp (597 high quality bases) assembled on 2005-11-30

> BS01810.5prime
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAGACACCAGTGCAACGAGTGC
TTGCGAAGCTACGCCACGTCCAAAACCTGCAGCGCCACCTGCGCCAGGAT
CATGGCCAGACTG

BS01810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-PA 1737 CG10366-RA 1..714 17..730 3570 100 Plus
CG10366-PA 1737 CG10366-RA 713..762 728..777 250 100 Plus
CG10366-PA 1737 CG10366-RA 762..799 776..813 190 100 Plus
CG17568-PA 1542 CG17568-RA 28..55 98..125 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 2062 CG10366-RA 112..910 17..813 3945 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19584630..19585221 224..813 2860 99.7 Plus
2L 23513712 2L 19584346..19584552 17..223 1035 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:12:59 has no hits.

BS01810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:50 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 1..799 17..813 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:52 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 1..799 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:17 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 110..910 13..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:43 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 110..910 13..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:43 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19584348..19584552 19..223 100 -> Plus
2L 19584630..19585221 224..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:17 Download gff for BS01810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19584348..19584552 19..223 100 -> Plus
arm_2L 19584630..19585221 224..813 99   Plus

BS01810.3prime Sequence

748 bp (614 high quality bases) assembled on 2005-11-30

> BS01810.3prime
ATGGTCTAGAAAGCTTTCAGCGATAGTCGATCATGATATGGTTATAAATA
TTATCTAACGTGGGTATAGCCGCAGCTGGGGTATCAGCTTGGGTGGCGTT
CTCCCCTCCGGGATCAGGCGCTGGTTCAGGCTGAGCATCTTGGATGACGG
CGGGATTCGAAGCTGGAGTATCCTTGGTGGCTGGCCTCGGTTTTTTGCCG
AAGGCGAAGCAGCCACTCTGTTTGGTGGCCACCGGCGACAGATTGTCCTT
GTTCTTGGTGAATGCCTTGAGCGCCTCCAGCTTGGGTATATTTCTGTTGT
GCGACCTGCCGCCGCCCGCCGCTTCTTGAGCAGCCAGCTCCTCGGGATGC
GACTTCTTCTTGTGCGTGCGGCAGTTGGAGCCGTTGGCAAAGGTGCGGTC
GCAAAAATCGCAGGAGTAAGGCTTCAGTCCTGTGTGCAGGATGAGGTGAT
TCTTCAGCGCCTTGGCGCGCTTAAACTCCCGGCCGCAGTAGTCGCACTTG
TGCTGCATCTGATCCGTGTGCACCAGTCGATGGCGATTCAAGGTGGTCCG
CGAATTCAGCTGCATTCCGCATTCGGGGCAGATGTACTTGTGCGGATCAT
GCGTCTCCTTGTGGTGTTTCAGACGATTGGCCGACTTAAAGCACTTCTTG
CACACCTCGCACTCGAAGGGGGCGTAGTCCGTGTGCTTGAGGACGTGCTC
CTTGAGCGCGCTCATCGAGTGCACACCCACACCGCACTGCTCGCAAAT

BS01810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-PA 1737 CG10366-RA 1006..1737 748..17 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 2062 CG10366-RA 1117..1848 748..17 3660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19585428..19585915 748..261 2440 100 Minus
2L 23513712 2L 19585983..19586226 260..17 1220 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:40:29 has no hits.

BS01810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:49 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 1006..1737 17..748 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:50 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 1006..1737 17..748 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:05 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 1117..1848 17..748 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:30 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 1117..1848 17..748 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:30 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19585428..19585915 261..748 100 -> Minus
2L 19585983..19586226 17..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:05 Download gff for BS01810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19585428..19585915 261..748 100 -> Minus
arm_2L 19585983..19586226 17..260 100   Minus

BS01810.complete Sequence

1769 bp assembled on 2008-08-15

GenBank Submission: FJ634661

> BS01810.complete
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAAGACACCAGTGCAACGAGTG
CTTGCGAAGCTACGCCACGTCCAAAACCCTGCAGCGCCACCTGCGCCAGG
ATCATGGCCAGACTGAGCCCACAACCGAGCAGCTGCAATGCCCGGATTGC
CCCAAGAAGTTTCGTCTACACTACCAGCTGGAGAGGCACATGAAATGGCA
CGTGCCCCTGCCCAAGCGCAAGCAGTACGCCTGTAGCAGTTGCGACAAGA
AGTTCGCCACCAGTGCATCCGCCCAGCAGCACGAGCAGTACATGCACCTG
GATGAGCGGCCGCGGCCGGTGATTTGCGAGCAGTGCGGTGTGGGTGTGCA
CTCGATGAGCGCGCTCAAGGAGCACGTCCTCAAGCACACGGACTACGCCC
CCTTCGAGTGCGAGGTGTGCAAGAAGTGCTTTAAGTCGGCCAATCGTCTG
AAACACCACAAGGAGACGCATGATCCGCACAAGTACATCTGCCCCGAATG
CGGAATGCAGCTGAATTCGCGGACCACCTTGAATCGCCATCGACTGGTGC
ACACGGATCAGATGCAGCACAAGTGCGACTACTGCGGCCGGGAGTTTAAG
CGCGCCAAGGCGCTGAAGAATCACCTCATCCTGCACACAGGACTGAAGCC
TTACTCCTGCGATTTTTGCGACCGCACCTTTGCCAACGGCTCCAACTGCC
GCACGCACAAGAAGAAGTCGCATCCCGAGGAGCTGGCTGCTCAAGAAGCG
GCGGGCGGCGGCAGGTCGCACAACAGAAATATACCCAAGCTGGAGGCGCT
CAAGGCATTCACCAAGAACAAGGACAATCTGTCGCCGGTGGCCACCAAAC
AGAGTGGCTGCTTCGCCTTCGGCAAAAAACCGAGGCCAGCCACCAAGGAT
ACTCCAGCTTCGAATCCCGCCGTCATCCAAGATGCTCAGCCTGAACCAGC
GCCTGATCCCGGAGGGGAGAACGCCACCCAAGCTGATACCCCAGCTGCGG
CTATACCCACGTTAGATAATATTTATAACCATATCATGATCGACTATCGC
TGAAAGCTTTCTAGACCAT

BS01810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 1737 CG10366-PA 1..1737 17..1753 8685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 2062 CG10366-RA 112..1848 17..1753 8685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19584630..19585915 224..1509 6430 100 Plus
2L 23513712 2L 19585983..19586226 1510..1753 1220 100 Plus
2L 23513712 2L 19584346..19584552 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:56:04 has no hits.

BS01810.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:46 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 86..1824 13..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:08 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 112..1847 17..1752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:53 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 88..1823 17..1752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:09 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 112..1847 17..1752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:09 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19584346..19584552 17..223 100 -> Plus
2L 19584630..19585915 224..1509 100 -> Plus
2L 19585983..19586225 1510..1752 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:08 Download gff for BS01810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19584346..19584552 17..223 100 -> Plus
arm_2L 19584630..19585915 224..1509 100 -> Plus
arm_2L 19585983..19586225 1510..1752 100   Plus

BS01810.pep Sequence

Translation from 16 to 1752

> BS01810.pep
MAAAQVEMHAAPAAPHVDRNPSSDWRQWCRLCAKDDVQGNLNVFLKNEDS
GEAASMELATAIGKYFWVNITRGEELPETICSECLSLVTSLVNFSERITR
VQKLYCILQSTPSQERPNLHELRSKFGLLDEETQTEVHYVDKKPKLDEQL
EFLPEESPYELANPLTPEEKQESVDQEQDQPTEEPDEQDADYEPNEDRVL
MSLCDVYGIQEDNSSAGSLDGSSPSTEKAGEDAADSEKRHQCNECLRSYA
TSKTLQRHLRQDHGQTEPTTEQLQCPDCPKKFRLHYQLERHMKWHVPLPK
RKQYACSSCDKKFATSASAQQHEQYMHLDERPRPVICEQCGVGVHSMSAL
KEHVLKHTDYAPFECEVCKKCFKSANRLKHHKETHDPHKYICPECGMQLN
SRTTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDF
CDRTFANGSNCRTHKKKSHPEELAAQEAAGGGRSHNRNIPKLEALKAFTK
NKDNLSPVATKQSGCFAFGKKPRPATKDTPASNPAVIQDAQPEPAPDPGG
ENATQADTPAAAIPTLDNIYNHIMIDYR*

BS01810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-PA 578 CG10366-PA 1..578 1..578 3140 100 Plus
CG6254-PA 634 CG6254-PA 15..618 22..539 724 30.4 Plus
CG17568-PA 513 CG17568-PA 5..504 23..500 662 30.4 Plus
wek-PB 470 CG4148-PB 4..462 21..500 539 28.7 Plus
wek-PA 470 CG4148-PA 4..462 21..500 539 28.7 Plus