Clone Sequence Records
BS01810.5prime Sequence
813 bp (597 high quality bases) assembled on 2005-11-30
> BS01810.5prime
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAGACACCAGTGCAACGAGTGC
TTGCGAAGCTACGCCACGTCCAAAACCTGCAGCGCCACCTGCGCCAGGAT
CATGGCCAGACTG
BS01810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-PA | 1737 | CG10366-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG10366-PA | 1737 | CG10366-RA | 713..762 | 728..777 | 250 | 100 | Plus |
CG10366-PA | 1737 | CG10366-RA | 762..799 | 776..813 | 190 | 100 | Plus |
CG17568-PA | 1542 | CG17568-RA | 28..55 | 98..125 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 2062 | CG10366-RA | 112..910 | 17..813 | 3945 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19584630..19585221 | 224..813 | 2860 | 99.7 | Plus |
2L | 23513712 | 2L | 19584346..19584552 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:12:59 has no hits.
BS01810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:50 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 1..799 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:52 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 1..799 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:17 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 110..910 | 13..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:43 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 110..910 | 13..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:43 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19584348..19584552 | 19..223 | 100 | -> | Plus |
2L | 19584630..19585221 | 224..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:17 Download gff for
BS01810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19584348..19584552 | 19..223 | 100 | -> | Plus |
arm_2L | 19584630..19585221 | 224..813 | 99 | | Plus |
BS01810.3prime Sequence
748 bp (614 high quality bases) assembled on 2005-11-30
> BS01810.3prime
ATGGTCTAGAAAGCTTTCAGCGATAGTCGATCATGATATGGTTATAAATA
TTATCTAACGTGGGTATAGCCGCAGCTGGGGTATCAGCTTGGGTGGCGTT
CTCCCCTCCGGGATCAGGCGCTGGTTCAGGCTGAGCATCTTGGATGACGG
CGGGATTCGAAGCTGGAGTATCCTTGGTGGCTGGCCTCGGTTTTTTGCCG
AAGGCGAAGCAGCCACTCTGTTTGGTGGCCACCGGCGACAGATTGTCCTT
GTTCTTGGTGAATGCCTTGAGCGCCTCCAGCTTGGGTATATTTCTGTTGT
GCGACCTGCCGCCGCCCGCCGCTTCTTGAGCAGCCAGCTCCTCGGGATGC
GACTTCTTCTTGTGCGTGCGGCAGTTGGAGCCGTTGGCAAAGGTGCGGTC
GCAAAAATCGCAGGAGTAAGGCTTCAGTCCTGTGTGCAGGATGAGGTGAT
TCTTCAGCGCCTTGGCGCGCTTAAACTCCCGGCCGCAGTAGTCGCACTTG
TGCTGCATCTGATCCGTGTGCACCAGTCGATGGCGATTCAAGGTGGTCCG
CGAATTCAGCTGCATTCCGCATTCGGGGCAGATGTACTTGTGCGGATCAT
GCGTCTCCTTGTGGTGTTTCAGACGATTGGCCGACTTAAAGCACTTCTTG
CACACCTCGCACTCGAAGGGGGCGTAGTCCGTGTGCTTGAGGACGTGCTC
CTTGAGCGCGCTCATCGAGTGCACACCCACACCGCACTGCTCGCAAAT
BS01810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-PA | 1737 | CG10366-RA | 1006..1737 | 748..17 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 2062 | CG10366-RA | 1117..1848 | 748..17 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19585428..19585915 | 748..261 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 19585983..19586226 | 260..17 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:40:29 has no hits.
BS01810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:49 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 1006..1737 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:50 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 1006..1737 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:05 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 1117..1848 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:30 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 1117..1848 | 17..748 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:30 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19585428..19585915 | 261..748 | 100 | -> | Minus |
2L | 19585983..19586226 | 17..260 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:05 Download gff for
BS01810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19585428..19585915 | 261..748 | 100 | -> | Minus |
arm_2L | 19585983..19586226 | 17..260 | 100 | | Minus |
BS01810.complete Sequence
1769 bp assembled on 2008-08-15
GenBank Submission: FJ634661
> BS01810.complete
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAAGACACCAGTGCAACGAGTG
CTTGCGAAGCTACGCCACGTCCAAAACCCTGCAGCGCCACCTGCGCCAGG
ATCATGGCCAGACTGAGCCCACAACCGAGCAGCTGCAATGCCCGGATTGC
CCCAAGAAGTTTCGTCTACACTACCAGCTGGAGAGGCACATGAAATGGCA
CGTGCCCCTGCCCAAGCGCAAGCAGTACGCCTGTAGCAGTTGCGACAAGA
AGTTCGCCACCAGTGCATCCGCCCAGCAGCACGAGCAGTACATGCACCTG
GATGAGCGGCCGCGGCCGGTGATTTGCGAGCAGTGCGGTGTGGGTGTGCA
CTCGATGAGCGCGCTCAAGGAGCACGTCCTCAAGCACACGGACTACGCCC
CCTTCGAGTGCGAGGTGTGCAAGAAGTGCTTTAAGTCGGCCAATCGTCTG
AAACACCACAAGGAGACGCATGATCCGCACAAGTACATCTGCCCCGAATG
CGGAATGCAGCTGAATTCGCGGACCACCTTGAATCGCCATCGACTGGTGC
ACACGGATCAGATGCAGCACAAGTGCGACTACTGCGGCCGGGAGTTTAAG
CGCGCCAAGGCGCTGAAGAATCACCTCATCCTGCACACAGGACTGAAGCC
TTACTCCTGCGATTTTTGCGACCGCACCTTTGCCAACGGCTCCAACTGCC
GCACGCACAAGAAGAAGTCGCATCCCGAGGAGCTGGCTGCTCAAGAAGCG
GCGGGCGGCGGCAGGTCGCACAACAGAAATATACCCAAGCTGGAGGCGCT
CAAGGCATTCACCAAGAACAAGGACAATCTGTCGCCGGTGGCCACCAAAC
AGAGTGGCTGCTTCGCCTTCGGCAAAAAACCGAGGCCAGCCACCAAGGAT
ACTCCAGCTTCGAATCCCGCCGTCATCCAAGATGCTCAGCCTGAACCAGC
GCCTGATCCCGGAGGGGAGAACGCCACCCAAGCTGATACCCCAGCTGCGG
CTATACCCACGTTAGATAATATTTATAACCATATCATGATCGACTATCGC
TGAAAGCTTTCTAGACCAT
BS01810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 1737 | CG10366-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 2062 | CG10366-RA | 112..1848 | 17..1753 | 8685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19584630..19585915 | 224..1509 | 6430 | 100 | Plus |
2L | 23513712 | 2L | 19585983..19586226 | 1510..1753 | 1220 | 100 | Plus |
2L | 23513712 | 2L | 19584346..19584552 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:56:04 has no hits.
BS01810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:46 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 86..1824 | 13..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:08 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 112..1847 | 17..1752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:53 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 88..1823 | 17..1752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:09 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 112..1847 | 17..1752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:09 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19584346..19584552 | 17..223 | 100 | -> | Plus |
2L | 19584630..19585915 | 224..1509 | 100 | -> | Plus |
2L | 19585983..19586225 | 1510..1752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:08 Download gff for
BS01810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19584346..19584552 | 17..223 | 100 | -> | Plus |
arm_2L | 19584630..19585915 | 224..1509 | 100 | -> | Plus |
arm_2L | 19585983..19586225 | 1510..1752 | 100 | | Plus |
BS01810.pep Sequence
Translation from 16 to 1752
> BS01810.pep
MAAAQVEMHAAPAAPHVDRNPSSDWRQWCRLCAKDDVQGNLNVFLKNEDS
GEAASMELATAIGKYFWVNITRGEELPETICSECLSLVTSLVNFSERITR
VQKLYCILQSTPSQERPNLHELRSKFGLLDEETQTEVHYVDKKPKLDEQL
EFLPEESPYELANPLTPEEKQESVDQEQDQPTEEPDEQDADYEPNEDRVL
MSLCDVYGIQEDNSSAGSLDGSSPSTEKAGEDAADSEKRHQCNECLRSYA
TSKTLQRHLRQDHGQTEPTTEQLQCPDCPKKFRLHYQLERHMKWHVPLPK
RKQYACSSCDKKFATSASAQQHEQYMHLDERPRPVICEQCGVGVHSMSAL
KEHVLKHTDYAPFECEVCKKCFKSANRLKHHKETHDPHKYICPECGMQLN
SRTTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDF
CDRTFANGSNCRTHKKKSHPEELAAQEAAGGGRSHNRNIPKLEALKAFTK
NKDNLSPVATKQSGCFAFGKKPRPATKDTPASNPAVIQDAQPEPAPDPGG
ENATQADTPAAAIPTLDNIYNHIMIDYR*
BS01810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-PA | 578 | CG10366-PA | 1..578 | 1..578 | 3140 | 100 | Plus |
CG6254-PA | 634 | CG6254-PA | 15..618 | 22..539 | 724 | 30.4 | Plus |
CG17568-PA | 513 | CG17568-PA | 5..504 | 23..500 | 662 | 30.4 | Plus |
wek-PB | 470 | CG4148-PB | 4..462 | 21..500 | 539 | 28.7 | Plus |
wek-PA | 470 | CG4148-PA | 4..462 | 21..500 | 539 | 28.7 | Plus |