Clone BS01813 Report

Search the DGRC for BS01813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:18
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTfb1-RA
Protein status:BS01813.pep: full length peptide match
Sequenced Size:1790

Clone Sequence Records

BS01813.3prime Sequence

812 bp (711 high quality bases) assembled on 2005-11-30

> BS01813.3prime
ATGGTCTAGAAAGCTTCTACCTGGTGTTGCGCAGTTTTCGCTCCTTCCAA
GTTGCGAACTTGCTGTTGGCGGTGCGCAGCAGCTGATTCAAGTGCTGCGT
CAGCGAGGATCGCAGTGGCGAAAGTTCGTGCATAGCGCGGTTCTCAAAAG
GCACTAGTTTGGCCATTTTGAAGCGCTGCAACGTCTCGTGCATACGCTGT
AACTTTGTCTCCAGCTCTTCTGAGGTGGGCGGAAAGCAGCTCCAAAAGTG
TTTCAGCAGCTCGGACAGCGAAAGGTATAAGTGGCGCAGCTCTCGTTGGA
AGTCGTTCGGAACAAGTTGTCCCGCTGACTGCTCTTGGAAACCGCGCATC
ATGGAACCGCCAGGACTTAGTTCACCCAGAGCATTTACTGCCGCCTTAGA
ACAGATGAACGTTCGTTGCACGTTGCGGTTTAGCCATGACTCCGAATTCC
GCACCAGCTTGTACTGCACCTCTTCAAGACTCATTGGATCGTTGTGGTTG
TCGTACATGCTGTTCTGGACAGGGCCATTGAGGTAACGCTCCACTTTGGA
CAGTTCGAAGTGCTTAGACTTGGCTTTCTCGCCGTTGGCGGAATCATCTC
CCTCCAATATAGGGTCCCCGAGATCCACATAGTGAATCTTTTCCATCAGT
CGTTGCTTTTTGCTCTGCGGCTCGTCTTTGTCCACCTGATCGGAGGAACT
CTTCGTCGCGGTGGCCGTGGCCTGGCCCTTTCCATTCATCCCGTTCGTAT
ACGCGGATTGGGAAACAGGCCCGTTGGCATTATTGGTACCATTGGTCATA
GTTGACGGCGCT

BS01813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8151-PB 1758 Tfb1-RB 963..1758 812..17 3980 100 Minus
CG8151-PC 1758 Tfb1-RC 963..1758 812..17 3980 100 Minus
CG8151-PA 1758 Tfb1-RA 963..1758 812..17 3980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 1102..1897 812..17 3980 100 Minus
Tfb1-RA 2145 CG8151-RA 1229..2024 812..17 3980 100 Minus
Tfb1-RC 2022 CG8151-RC 1106..1901 812..17 3980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14364442..14364935 812..319 2470 100 Minus
2R 25286936 2R 14364996..14365171 318..143 880 100 Minus
2R 25286936 2R 14365221..14365352 148..17 645 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 23:17:58 has no hits.

BS01813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:55 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-PC 963..1758 17..812 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:59 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8151-PA 963..1758 17..812 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:39:50 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 1106..1910 9..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:20 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 1106..1910 9..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:33:20 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14364996..14365171 143..318 100 -> Minus
2R 14365227..14365361 9..142 97   Minus
2R 14364442..14364935 319..812 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:39:50 Download gff for BS01813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10251947..10252440 319..812 100 -> Minus
arm_2R 10252501..10252676 143..318 100 -> Minus
arm_2R 10252732..10252866 9..142 97   Minus

BS01813.5prime Sequence

663 bp (652 high quality bases) assembled on 2005-11-30

> BS01813.5prime
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTC

BS01813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8151-PB 1758 Tfb1-RB 1..647 17..663 3185 99.6 Plus
CG8151-PC 1758 Tfb1-RC 1..647 17..663 3185 99.6 Plus
CG8151-PA 1758 Tfb1-RA 1..647 17..663 3185 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 140..786 17..663 3205 99.7 Plus
Tfb1-RA 2145 CG8151-RA 267..913 17..663 3205 99.7 Plus
Tfb1-RC 2022 CG8151-RC 144..790 17..663 3205 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14363576..14363916 171..511 1690 99.7 Plus
2R 25286936 2R 14363360..14363513 17..170 770 100 Plus
2R 25286936 2R 14363972..14364126 509..663 760 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 01:46:03 has no hits.

BS01813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:56 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-PC 1..647 17..663 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:01 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8151-PA 1..647 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:06:20 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..790 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:06 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..790 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:06 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14363360..14363513 17..170 100 -> Plus
2R 14363576..14363914 171..509 99 -> Plus
2R 14363973..14364126 510..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:06:20 Download gff for BS01813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10250865..10251018 17..170 100 -> Plus
arm_2R 10251081..10251419 171..509 99 -> Plus
arm_2R 10251478..10251631 510..663 99   Plus

BS01813.complete Sequence

1790 bp assembled on 2009-08-24

GenBank Submission: KX798944

> BS01813.complete
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCGCAACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCTTAAGACCTGTGCTAACGTGACCTCAGCGCCGTCAACTATGACCAAT
GGTACCAATAATGCCAACGGGCCTGTTTCCCAATCCGCGTATACGAACGG
GATGAATGGAAAGGGCCAGGCCACGGCCACCGCGACGAAGAGTTCCTCCG
ATCAGGTGGACAAAGACGAGCCGCAGAGCAAAAAGCAACGACTGATGGAA
AAGATTCACTATGTGGATCTCGGGGACCCTATATTGGAGGGAGATGATTC
CGCCAACGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTCCAAAGTGG
AGCGTTACCTCAATGGCCCTGTCCAGAACAGCATGTACGACAACCACAAC
GATCCAATGAGTCTTGAAGAGGTGCAGTACAAGCTGGTGCGGAATTCGGA
GTCATGGCTAAACCGCAACGTGCAACGAACGTTCATCTGTTCTAAGGCGG
CAGTAAATGCTCTGGGTGAACTAAGTCCTGGCGGTTCCATGATGCGCGGT
TTCCAAGAGCAGTCAGCGGGACAACTTGTTCCGAACGACTTCCAACGAGA
GCTGCGCCACTTATACCTTTCGCTGTCCGAGCTGCTGAAACACTTTTGGA
GCTGCTTTCCGCCCACCTCAGAAGAGCTGGAGACAAAGTTACAGCGTATG
CACGAGACGTTGCAGCGCTTCAAAATGGCCAAACTAGTGCCTTTTGAGAA
CCGCGCTATGCACGAACTTTCGCCACTGCGATCCTCGCTGACGCAGCACT
TGAATCAGCTGCTGCGCACCGCCAACAGCAAGTTCGCAACTTGGAAGGAG
CGAAAACTGCGCAACACCAGGTAGAAGCTTTCTAGACCAT

BS01813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 1758 CG8151-PD 1..1758 17..1774 8745 99.8 Plus
Tfb1-RA 1758 CG8151-PA 1..1758 17..1774 8745 99.8 Plus
Tfb1-RC 1758 CG8151-PC 1..1758 17..1774 8745 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 140..1897 17..1774 8745 99.8 Plus
Tfb1-RA 2145 CG8151-RA 267..2024 17..1774 8745 99.8 Plus
Tfb1-RC 2022 CG8151-RC 144..1901 17..1774 8745 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14363972..14364935 509..1472 4790 99.8 Plus
2R 25286936 2R 14363576..14363916 171..511 1690 99.7 Plus
2R 25286936 2R 14364996..14365171 1473..1648 880 100 Plus
2R 25286936 2R 14363360..14363513 17..170 770 100 Plus
2R 25286936 2R 14365221..14365352 1643..1774 645 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 01:28:05 has no hits.

BS01813.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:41 Download gff for BS01813.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 267..2024 17..1774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:28 Download gff for BS01813.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1901 17..1774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:13 Download gff for BS01813.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1901 17..1774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:13 Download gff for BS01813.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363360..14363513 17..170 100 -> Plus
2R 14363576..14363914 171..509 99 -> Plus
2R 14363973..14364935 510..1472 99 -> Plus
2R 14364996..14365171 1473..1648 100 -> Plus
2R 14365227..14365352 1649..1774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:28 Download gff for BS01813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10252732..10252857 1649..1774 100   Plus
arm_2R 10251478..10252440 510..1472 99 -> Plus
arm_2R 10250865..10251018 17..170 100 -> Plus
arm_2R 10251081..10251419 171..509 99 -> Plus
arm_2R 10252501..10252676 1473..1648 100 -> Plus

BS01813.pep Sequence

Translation from 16 to 1773

> BS01813.pep
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTR*

BS01813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-PD 585 CG8151-PD 1..585 1..585 3052 100 Plus
Tfb1-PA 585 CG8151-PA 1..585 1..585 3052 100 Plus
Tfb1-PC 585 CG8151-PC 1..585 1..585 3052 100 Plus
Tfb1-PB 585 CG8151-PB 1..585 1..585 3052 100 Plus