Clone Sequence Records
BS01813.3prime Sequence
812 bp (711 high quality bases) assembled on 2005-11-30
> BS01813.3prime
ATGGTCTAGAAAGCTTCTACCTGGTGTTGCGCAGTTTTCGCTCCTTCCAA
GTTGCGAACTTGCTGTTGGCGGTGCGCAGCAGCTGATTCAAGTGCTGCGT
CAGCGAGGATCGCAGTGGCGAAAGTTCGTGCATAGCGCGGTTCTCAAAAG
GCACTAGTTTGGCCATTTTGAAGCGCTGCAACGTCTCGTGCATACGCTGT
AACTTTGTCTCCAGCTCTTCTGAGGTGGGCGGAAAGCAGCTCCAAAAGTG
TTTCAGCAGCTCGGACAGCGAAAGGTATAAGTGGCGCAGCTCTCGTTGGA
AGTCGTTCGGAACAAGTTGTCCCGCTGACTGCTCTTGGAAACCGCGCATC
ATGGAACCGCCAGGACTTAGTTCACCCAGAGCATTTACTGCCGCCTTAGA
ACAGATGAACGTTCGTTGCACGTTGCGGTTTAGCCATGACTCCGAATTCC
GCACCAGCTTGTACTGCACCTCTTCAAGACTCATTGGATCGTTGTGGTTG
TCGTACATGCTGTTCTGGACAGGGCCATTGAGGTAACGCTCCACTTTGGA
CAGTTCGAAGTGCTTAGACTTGGCTTTCTCGCCGTTGGCGGAATCATCTC
CCTCCAATATAGGGTCCCCGAGATCCACATAGTGAATCTTTTCCATCAGT
CGTTGCTTTTTGCTCTGCGGCTCGTCTTTGTCCACCTGATCGGAGGAACT
CTTCGTCGCGGTGGCCGTGGCCTGGCCCTTTCCATTCATCCCGTTCGTAT
ACGCGGATTGGGAAACAGGCCCGTTGGCATTATTGGTACCATTGGTCATA
GTTGACGGCGCT
BS01813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8151-PB | 1758 | Tfb1-RB | 963..1758 | 812..17 | 3980 | 100 | Minus |
CG8151-PC | 1758 | Tfb1-RC | 963..1758 | 812..17 | 3980 | 100 | Minus |
CG8151-PA | 1758 | Tfb1-RA | 963..1758 | 812..17 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 1102..1897 | 812..17 | 3980 | 100 | Minus |
Tfb1-RA | 2145 | CG8151-RA | 1229..2024 | 812..17 | 3980 | 100 | Minus |
Tfb1-RC | 2022 | CG8151-RC | 1106..1901 | 812..17 | 3980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14364442..14364935 | 812..319 | 2470 | 100 | Minus |
2R | 25286936 | 2R | 14364996..14365171 | 318..143 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14365221..14365352 | 148..17 | 645 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:17:58 has no hits.
BS01813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:55 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-PC | 963..1758 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:25:59 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8151-PA | 963..1758 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:39:50 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 1106..1910 | 9..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:20 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 1106..1910 | 9..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:33:20 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14364996..14365171 | 143..318 | 100 | -> | Minus |
2R | 14365227..14365361 | 9..142 | 97 | | Minus |
2R | 14364442..14364935 | 319..812 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:39:50 Download gff for
BS01813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10251947..10252440 | 319..812 | 100 | -> | Minus |
arm_2R | 10252501..10252676 | 143..318 | 100 | -> | Minus |
arm_2R | 10252732..10252866 | 9..142 | 97 | | Minus |
BS01813.5prime Sequence
663 bp (652 high quality bases) assembled on 2005-11-30
> BS01813.5prime
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTC
BS01813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8151-PB | 1758 | Tfb1-RB | 1..647 | 17..663 | 3185 | 99.6 | Plus |
CG8151-PC | 1758 | Tfb1-RC | 1..647 | 17..663 | 3185 | 99.6 | Plus |
CG8151-PA | 1758 | Tfb1-RA | 1..647 | 17..663 | 3185 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 140..786 | 17..663 | 3205 | 99.7 | Plus |
Tfb1-RA | 2145 | CG8151-RA | 267..913 | 17..663 | 3205 | 99.7 | Plus |
Tfb1-RC | 2022 | CG8151-RC | 144..790 | 17..663 | 3205 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14363576..14363916 | 171..511 | 1690 | 99.7 | Plus |
2R | 25286936 | 2R | 14363360..14363513 | 17..170 | 770 | 100 | Plus |
2R | 25286936 | 2R | 14363972..14364126 | 509..663 | 760 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:46:03 has no hits.
BS01813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:56 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-PC | 1..647 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:01 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8151-PA | 1..647 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:06:20 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..790 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:06 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..790 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:06 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14363360..14363513 | 17..170 | 100 | -> | Plus |
2R | 14363576..14363914 | 171..509 | 99 | -> | Plus |
2R | 14363973..14364126 | 510..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:06:20 Download gff for
BS01813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10250865..10251018 | 17..170 | 100 | -> | Plus |
arm_2R | 10251081..10251419 | 171..509 | 99 | -> | Plus |
arm_2R | 10251478..10251631 | 510..663 | 99 | | Plus |
BS01813.complete Sequence
1790 bp assembled on 2009-08-24
GenBank Submission: KX798944
> BS01813.complete
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCGCAACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCTTAAGACCTGTGCTAACGTGACCTCAGCGCCGTCAACTATGACCAAT
GGTACCAATAATGCCAACGGGCCTGTTTCCCAATCCGCGTATACGAACGG
GATGAATGGAAAGGGCCAGGCCACGGCCACCGCGACGAAGAGTTCCTCCG
ATCAGGTGGACAAAGACGAGCCGCAGAGCAAAAAGCAACGACTGATGGAA
AAGATTCACTATGTGGATCTCGGGGACCCTATATTGGAGGGAGATGATTC
CGCCAACGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTCCAAAGTGG
AGCGTTACCTCAATGGCCCTGTCCAGAACAGCATGTACGACAACCACAAC
GATCCAATGAGTCTTGAAGAGGTGCAGTACAAGCTGGTGCGGAATTCGGA
GTCATGGCTAAACCGCAACGTGCAACGAACGTTCATCTGTTCTAAGGCGG
CAGTAAATGCTCTGGGTGAACTAAGTCCTGGCGGTTCCATGATGCGCGGT
TTCCAAGAGCAGTCAGCGGGACAACTTGTTCCGAACGACTTCCAACGAGA
GCTGCGCCACTTATACCTTTCGCTGTCCGAGCTGCTGAAACACTTTTGGA
GCTGCTTTCCGCCCACCTCAGAAGAGCTGGAGACAAAGTTACAGCGTATG
CACGAGACGTTGCAGCGCTTCAAAATGGCCAAACTAGTGCCTTTTGAGAA
CCGCGCTATGCACGAACTTTCGCCACTGCGATCCTCGCTGACGCAGCACT
TGAATCAGCTGCTGCGCACCGCCAACAGCAAGTTCGCAACTTGGAAGGAG
CGAAAACTGCGCAACACCAGGTAGAAGCTTTCTAGACCAT
BS01813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 1758 | CG8151-PD | 1..1758 | 17..1774 | 8745 | 99.8 | Plus |
Tfb1-RA | 1758 | CG8151-PA | 1..1758 | 17..1774 | 8745 | 99.8 | Plus |
Tfb1-RC | 1758 | CG8151-PC | 1..1758 | 17..1774 | 8745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 140..1897 | 17..1774 | 8745 | 99.8 | Plus |
Tfb1-RA | 2145 | CG8151-RA | 267..2024 | 17..1774 | 8745 | 99.8 | Plus |
Tfb1-RC | 2022 | CG8151-RC | 144..1901 | 17..1774 | 8745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14363972..14364935 | 509..1472 | 4790 | 99.8 | Plus |
2R | 25286936 | 2R | 14363576..14363916 | 171..511 | 1690 | 99.7 | Plus |
2R | 25286936 | 2R | 14364996..14365171 | 1473..1648 | 880 | 100 | Plus |
2R | 25286936 | 2R | 14363360..14363513 | 17..170 | 770 | 100 | Plus |
2R | 25286936 | 2R | 14365221..14365352 | 1643..1774 | 645 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:05 has no hits.
BS01813.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:41 Download gff for
BS01813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RA | 267..2024 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:28 Download gff for
BS01813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1901 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:13 Download gff for
BS01813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1901 | 17..1774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:13 Download gff for
BS01813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14363360..14363513 | 17..170 | 100 | -> | Plus |
2R | 14363576..14363914 | 171..509 | 99 | -> | Plus |
2R | 14363973..14364935 | 510..1472 | 99 | -> | Plus |
2R | 14364996..14365171 | 1473..1648 | 100 | -> | Plus |
2R | 14365227..14365352 | 1649..1774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:28 Download gff for
BS01813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10252732..10252857 | 1649..1774 | 100 | | Plus |
arm_2R | 10251478..10252440 | 510..1472 | 99 | -> | Plus |
arm_2R | 10250865..10251018 | 17..170 | 100 | -> | Plus |
arm_2R | 10251081..10251419 | 171..509 | 99 | -> | Plus |
arm_2R | 10252501..10252676 | 1473..1648 | 100 | -> | Plus |
BS01813.pep Sequence
Translation from 16 to 1773
> BS01813.pep
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTR*
BS01813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-PD | 585 | CG8151-PD | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PA | 585 | CG8151-PA | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PC | 585 | CG8151-PC | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PB | 585 | CG8151-PB | 1..585 | 1..585 | 3052 | 100 | Plus |