Clone Sequence Records
BS01815.3prime Sequence
781 bp (712 high quality bases) assembled on 2005-11-30
> BS01815.3prime
ATGGTCTAGAAAGCTTCTAGTACCATGAGGGATAGAACGGCTGTGGCGGC
ATCGTTGTGTAGTTGACCTTCGAGGGCGAAGGAAAGGCGGCGGCATTGAA
GTTCTGGGGCATGAAGTGCGCCGACGAACTGGGCGGCGGATAGTGCGGAT
GTGCGCCTGCGTACTGCGGATGCGGATGTGCGTGCGGATGCGGCGCATGG
GGATGTCCGTGATGCGAATGGGCGTGGCCTGGTGCCGGATAGGATGCATA
CTGCGGCGTATGCTGATACGGATGGAACATCTGGTGGGCGGTGACATCCA
GAGCCTGGCTGGTCGAGCTGGTGGAGTTCAGCGAGTCCTCCGGCGAAAGT
GGCGCATTGGGGCGCAGTGCCTGCATGGAGCTCCATCCGCCGTACAACTG
CGACTGACTGGCCGCGATCAGGTCCACCGATTCCACTTTCAGGGCAGCCG
ATAGCTCCTCACTTCCAGCACTGGCATTGGCCAGCGACTGCGAGGGATCG
GCTCCCGAGTTGGCCCCACTGGAGGAGGTCACACCAGCTCCACTCACCAC
CGCGGAAAGGCTGTTGGGTGTGGGTGGCAGTTGCCCGAAGGCGGAGGACA
CGGACTCGTTGGGGCTCTCGTTGCGTGGCATAGTCTGGTGGGTTTCCGTT
TCGGTGCCGTAAACTGAACCCAACTGAGTCTCATAGCTGGAGACGATGAT
GTTCCCGGTGGGTGTGGTGTTGCCATTCTCACCCGGCATTATGTAGCTGG
CTGTGTTAGCGCTGGGATTGTAGAACTGATG
BS01815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6716-PA | 1773 | prd-RA | 1009..1773 | 781..17 | 3825 | 100 | Minus |
| CG6716-PB | 1842 | prd-RB | 1078..1842 | 781..17 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-RB | 2459 | CG6716-RB | 1376..2142 | 781..15 | 3835 | 100 | Minus |
| prd-RA | 2330 | CG6716-RA | 1247..2013 | 781..15 | 3835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12083312..12084078 | 15..781 | 3835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:26:49 has no hits.
BS01815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:14:59 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6716-PB | 1078..1842 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:05 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6716-PB | 1078..1842 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:49 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RA | 1247..2013 | 15..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:29 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RA | 1247..2013 | 15..781 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:29 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12083312..12084078 | 15..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:49 Download gff for
BS01815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12083312..12084078 | 15..781 | 100 | | Plus |
BS01815.5prime Sequence
806 bp (705 high quality bases) assembled on 2005-11-30
> BS01815.5prime
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAG
BS01815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6716-PB | 1842 | prd-RB | 67..859 | 14..806 | 3965 | 100 | Plus |
| CG6716-PA | 1773 | prd-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG2692-PA | 1350 | gsb-n-RA | 199..266 | 167..234 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-RB | 2459 | CG6716-RB | 365..1157 | 14..806 | 3965 | 100 | Plus |
| prd-RA | 2330 | CG6716-RA | 237..1028 | 15..806 | 3960 | 100 | Plus |
| gsb-RA | 1649 | CG3388-RA | 263..495 | 50..282 | 415 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12084297..12085089 | 806..14 | 3965 | 100 | Minus |
| 2R | 25286936 | 2R | 25063257..25063489 | 50..282 | 415 | 78.5 | Plus |
| 2R | 25286936 | 2R | 25051407..25051609 | 243..41 | 370 | 78.8 | Minus |
| 2R | 25286936 | 2R | 25041692..25041878 | 759..573 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:03:50 has no hits.
BS01815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:15:00 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6716-PB | 64..859 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:07 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6716-PB | 64..859 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:39:46 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 362..1157 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:10 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 362..1157 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:10 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12084297..12085097 | 8..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:39:46 Download gff for
BS01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12084297..12085097 | 8..806 | 99 | | Minus |
BS01815.complete Sequence
1805 bp assembled on 2007-12-11
GenBank Submission: FJ634662
> BS01815.complete
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAGTGAGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGGTATCA
AGTGTGCCCAGCATGGCTCCGCTGGCCATGATGCCGGGATCCCTGGATCC
AGCCACTGTGTACCAGCAGCAATACGATTTCTACGGCAGTCACGCCAACA
TTTCCGTATCCGCCGCAGCTCCAATGGCCAGTAGTAATCTATCGCCCGGA
ATTACAACCACGCCACCGCACCACCATCAGTTCTACAATCCCAGCGCTAA
CACAGCCAGCTACATAATGCCGGGTGAGAATGGCAACACCACACCCACCG
GGAACATCATCGTCTCCAGCTATGAGACTCAGTTGGGTTCAGTTTACGGC
ACCGAAACGGAAACCCACCAGACTATGCCACGCAACGAGAGCCCCAACGA
GTCCGTGTCCTCCGCCTTCGGGCAACTGCCACCCACACCCAACAGCCTTT
CCGCGGTGGTGAGTGGAGCTGGTGTGACCTCCTCCAGTGGGGCCAACTCG
GGAGCCGATCCCTCGCAGTCGCTGGCCAATGCCAGTGCTGGAAGTGAGGA
GCTATCGGCTGCCCTGAAAGTGGAATCGGTGGACCTGATCGCGGCCAGTC
AGTCGCAGTTGTACGGCGGATGGAGCTCCATGCAGGCACTGCGCCCCAAT
GCGCCACTTTCGCCGGAGGACTCGCTGAACTCCACCAGCTCGACCAGCCA
GGCTCTGGATGTCACCGCCCACCAGATGTTCCATCCGTATCAGCATACGC
CGCAGTATGCATCCTATCCGGCACCAGGCCACGCCCATTCGCATCACGGA
CATCCCCATGCGCCGCATCCGCACGCACATCCGCATCCGCAGTACGCAGG
CGCACATCCGCACTATCCGCCGCCCAGTTCGTCGGCGCACTTCATGCCCC
AGAACTTCAATGCCGCCGCCTTTCCTTCGCCCTCGAAGGTCAACTACACA
ACGATGCCGCCACAGCCGTTCTATCCCTCATGGTACTAGAAGCTTTCTAG
ACCAT
BS01815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-RB | 1842 | CG6716-PB | 67..1842 | 14..1789 | 8880 | 100 | Plus |
| prd-RA | 1773 | CG6716-PA | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| gsb-RA | 1284 | CG3388-PA | 79..311 | 50..282 | 415 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-RB | 2459 | CG6716-RB | 365..2142 | 14..1791 | 8890 | 100 | Plus |
| prd-RA | 2330 | CG6716-RA | 237..2013 | 15..1791 | 8885 | 100 | Plus |
| gsb-RA | 1649 | CG3388-RA | 263..495 | 50..282 | 415 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12083312..12085089 | 1791..14 | 8890 | 100 | Minus |
| 2R | 25286936 | 2R | 25063257..25063489 | 50..282 | 415 | 78.5 | Plus |
| 2R | 25286936 | 2R | 25051407..25051609 | 243..41 | 370 | 78.8 | Minus |
| 2R | 25286936 | 2R | 25041692..25041878 | 759..573 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:31 has no hits.
BS01815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:27 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 64..1842 | 9..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:32:07 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 327..2107 | 9..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:44 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 368..2140 | 17..1789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:05 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 333..2105 | 17..1789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:48 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 368..2140 | 17..1789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:48 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12083314..12085086 | 17..1789 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:44 Download gff for
BS01815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12083314..12085086 | 17..1789 | 100 | | Minus |
BS01815.pep Sequence
Translation from 16 to 1788
> BS01815.pep
MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSH
GCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSW
EIREKLIREGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAGDGT
KASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSAS
QLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT
SVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQ
QQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYI
MPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPNESVSSA
FGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEELSAAL
KVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVT
AHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAGAHPHY
PPPSSSAHFMPQNFNAAAFPSPSKVNYTTMPPQPFYPSWY*
BS01815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-PB | 613 | CG6716-PB | 24..613 | 1..590 | 3103 | 100 | Plus |
| prd-PA | 590 | CG6716-PA | 1..590 | 1..590 | 3103 | 100 | Plus |
| gsb-n-PA | 449 | CG2692-PA | 20..324 | 4..337 | 850 | 58 | Plus |
| gsb-PA | 427 | CG3388-PA | 19..313 | 4..323 | 847 | 57.5 | Plus |
| Poxm-PC | 370 | CG9610-PC | 11..177 | 6..176 | 493 | 57.3 | Plus |
