Clone BS01827 Report

Search the DGRC for BS01827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:18
Well:27
Vector:pDNR-Dual
Associated Gene/Transcripttoe-RA
Protein status:BS01827.pep: full length peptide match
Sequenced Size:1954

Clone Sequence Records

BS01827.3prime Sequence

766 bp (727 high quality bases) assembled on 2005-11-30

> BS01827.3prime
ATGGTCTAGAAAGCTTCACTCGGCGTCGTGCTCCACATTGATAACCTCCT
CCTCCTCCTGCTCATCCTCATACTCTCGCTCCTCCGACTGATGATCCCGT
CCAGACTGTGCCTGGATTGGTGACGAACCATGTCCCAGATTGAGGGGCGT
GCCCATGTACTTGGCTATGTACTGGCGGGCGAAGCTGAGCGCGAAGGCCG
CCGCCGATGCCGTGGGCAAGGTCATGGGCATCGGCAAGGTCATGGGCAGA
GCGCGAAATGCACTGTTCTCACCGCCCATTGATAATGGAGCTGATGCTGT
GGGTGAGGCAGTGGCCACCGCCGCTGCTGGCTCTTCCATGTGCTGGTTGC
TGCTGACGCTGCTGGTTTTGCTGCTCATTTTGCTGCCGGGATTGATGGTG
TTGCACGGTTGACTGTTGCTGCTGCTGCTGCTGGTGTTGCACATGTTGCT
GGTGCTGTACGGATATGGCTGCTTCTGTTGGCCAGATTCTGGAACTGCAA
CTGGAACTGGAACTGGGATTGGACTGACCGGACTGACCACCGGATTGACC
AACGGCGTGGGTGAGCTCGATGTCGAGGGCGAGTCGCGCTGCTTGATCAA
GTTGACCCGCTGGTGGCGCCGCCATTTCGCTCGTCTGTTGGAAAACCAAA
CCTGCACCCTGGCCTCGCTCAGTGCCGTCCGGGCGGCCAGTTTCTCGCGG
GTATTCACGCAGGGATAGTGCGACTTGTCGAACTCCTTTCTCAGCTCATC
CAGCTGCTCCGGACTG

BS01827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10704-PA 1923 toe-RA 1201..1923 738..16 3615 100 Minus
CG31330-PA 2004 CG31330-RA 522..549 440..413 140 100 Minus
CG6118-PA 2832 CG6118-RA 669..695 440..414 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
toe-RA 2400 CG10704-RA 1528..2278 766..16 3710 99.7 Minus
toe-RB 2383 CG10704-RB 1528..2261 766..16 3445 97.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12422632..12423270 16..654 3195 100 Plus
3L 28110227 3L 12423448..12423564 650..766 540 97.4 Plus
Blast to na_te.dros performed on 2015-02-09 02:29:10 has no hits.

BS01827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:15:25 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
toe-PA 1173..1923 16..766 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:37 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10704-PA 1173..1923 16..766 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:23 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
toe-RA 1528..2285 9..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:35 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
toe-RA 1528..2285 9..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:35 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12422625..12423267 9..651 99 <- Plus
3L 12423450..12423564 652..766 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:23 Download gff for BS01827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12415725..12416367 9..651 99 <- Plus
arm_3L 12416550..12416664 652..766 98   Plus

BS01827.5prime Sequence

788 bp (646 high quality bases) assembled on 2005-11-30

> BS01827.5prime
GAAGTTATCAGTCGACATGGCAACCAGCACCTCACCCGGACCCACAAGGA
CAACTGCAGCCATTAGAGTCTCCCTGCCAGGAGCAGCACCCGCAATTCCC
GCTACCGCCACCGCCGGCTCTCAATCCCCCGGCGCCATCATGCCCATGGC
CGCCGTGCCGTTGCCGTCGCATCTCCAACTGCTGGGCAGTTCCGCGGGAG
GCGTCGGTCAGCCGGCGGCAATCACGCCCGTTTCGCCCACGGCTGCTACC
ACAGTTCTCGCCCAACCGCACAGTTTGAGCCCCTCCACGCCCATCCTCAC
CCAAGGAGCACCCCCTGCTGCGGCGTTGGGCGGCATCTTCTGCGGAGGCA
GTGCAGCAGCGGGACCAGGAGCAGCAGCGGCGGCGGCCACGAATCTCAAC
GCCCTGGCCTCGCAGCATCGACTACTGGAGTTGTCCCGCTTCGGACTGCG
TGGATATGATCTGGCGCAGCATATGCTATCCCAACAAGGAGCCGTATCCA
AGTTGCTGGGCACCCTGCGACCACCTGGCCTAATTGGCGGCTCCAAGCCG
AAGGTGGCCACCCCGACTGTCGTCTCCAAGATCGAGCAGTACAAGCGCGA
GAATCCGACGATCTTTGCATGGGAAATCCGCGAGCGACTGATCACCGAAG
GTGTCTGCACCAATGCCACTGCTCCTTCGGTGAGCAGCATCAATCGCATA
TTGCGTAATCGAGCGGCGGAAAGGGCAGCTGCGGAATTTGCTCGGGCGGC
GAGTTACGGCTATGCCATCCATCCCACACATCCGCATC

BS01827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10704-PA 1923 toe-RA 1..772 17..788 3860 100 Plus
CG10488-PA 2013 eyg-RA 442..560 497..615 295 89.9 Plus
CG10488-PB 2013 eyg-RB 442..560 497..615 295 89.9 Plus
CG10488-PA 2013 eyg-RA 595..644 650..699 175 94 Plus
CG10488-PB 2013 eyg-RB 595..644 650..699 175 94 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
toe-RB 2383 CG10704-RB 355..1127 16..788 3865 100 Plus
toe-RA 2400 CG10704-RA 355..1127 16..788 3865 100 Plus
eyg-RC 3148 CG10488-RC 758..1062 413..714 780 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12427557..12427814 510..253 1290 100 Minus
3L 28110227 3L 12432076..12432314 254..16 1195 100 Minus
3L 28110227 3L 12425381..12425524 652..509 720 100 Minus
3L 28110227 3L 12424031..12424171 788..648 705 100 Minus
3L 28110227 3L 12465031..12465158 642..515 400 87.5 Minus
3L 28110227 3L 12464834..12464899 714..649 240 90.9 Minus
Blast to na_te.dros performed on 2015-02-10 02:47:44 has no hits.

BS01827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:15:26 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
toe-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:26:38 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10704-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:14 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
toe-RA 351..1127 11..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:05 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
toe-RA 351..1127 11..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:05 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12425383..12425523 510..650 100 <- Minus
3L 12427558..12427812 255..509 100 <- Minus
3L 12424031..12424168 651..788 100 <- Minus
3L 12432076..12432318 11..254 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:14 Download gff for BS01827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12417131..12417268 651..788 100 <- Minus
arm_3L 12418483..12418623 510..650 100 <- Minus
arm_3L 12420658..12420912 255..509 100 <- Minus
arm_3L 12425176..12425418 11..254 99   Minus

BS01827.complete Sequence

1954 bp assembled on 2008-08-14

GenBank Submission: FJ634663

> BS01827.complete
GAAGTTATCAGTCGACATGGCAACCAGCACCTCACCCGGACCCACAAGGA
CAACTGCAGCCATTAGAGTCTCCCTGCCAGGAGCAGCACCCGCAATTCCC
GCTACCGCCACCGCCGGCTCTCAATCCCCCGGCGCCATCATGCCCATGGC
CGCCGTGCCGTTGCCGTCGCATCTCCAACTGCTGGGCAGTTCCGCGGGAG
GCGTCGGTCAGCCGGCGGCAATCACGCCCGTTTCGCCCACGGCTGCTACC
ACAGTTCTCGCCCAACCGCACAGTTTGAGCCCCTCCACGCCCATCCTCAC
CCAAGGAGCACCCCCTGCTGCGGCGTTGGGCGGCATCTTCTGCGGAGGCA
GTGCAGCAGCGGGACCAGGAGCAGCAGCGGCGGCGGCCACGAATCTCAAC
GCCCTGGCCTCGCAGCATCGACTACTGGAGTTGTCCCGCTTCGGACTGCG
TGGATATGATCTGGCGCAGCATATGCTATCCCAACAAGGAGCCGTATCCA
AGTTGCTGGGCACCCTGCGACCACCTGGCCTAATTGGCGGCTCCAAGCCG
AAGGTGGCCACCCCGACTGTCGTCTCCAAGATCGAGCAGTACAAGCGCGA
GAATCCGACGATCTTTGCATGGGAAATCCGCGAGCGACTGATCACCGAAG
GTGTCTGCACCAATGCCACTGCTCCTTCGGTGAGCAGCATCAATCGCATA
TTGCGTAATCGAGCGGCGGAAAGGGCAGCTGCGGAATTTGCTCGGGCGGC
GAGTTACGGCTATGCCATCCATCCCACACATCCGCATCCGTACACCAGTT
TCCCCACTTGGCCGGCGCATCATCCGCTGTGGGGAGCCGTGCCCCTGGCC
ACGCCACCTGGTGGCGGCCCTGCTGGAGCCGGTGGTGCACTGCAGCCGGG
CGGCAGTGGCAGCAGCTATGGCAGTGATGGCAACATGAGCTCAAATCCCA
ATAGCAGCAACAGCAACACCACCCACAGCAATGGCCACAATACCAACAGC
GGCAGTGGATGCGGGGATAGTAGTGCCGGAAGTGGACGCCTCTCCCTGCC
GGCACTTTCGCCGGATTCCGGAAGTAGGGACAGCCGCTCCCCAGACGCAG
ATGCCAATCGGATGATAGATATCGAAGGCGAGGACAGCGAGTCGCAGGAC
AGTGACCAGCCGAAGTTCCGGCGCAATCGCACCACCTTCAGTCCGGAGCA
GCTGGATGAGCTGGAGAAGGAGTTCGACAAGTCGCACTATCCCTGCGTGA
ATACCCGCGAGAAACTGGCCGCCCGGACGGCACTGAGCGAGGCCAGGGTG
CAGGTTTGGTTTTCCAACAGACGAGCGAAATGGCGGCGCCACCAGCGGGT
CAACTTGATCAAGCAGCGCGACTCGCCCTCGACATCGAGCTCACCCACGC
CGTTGGTCAATCCGGTGGTCAGTCCGGTCAGTCCAATCCCAGTTCCAGTT
CCAGTTGCAGTTCCAGAATCTGGCCAACAGAAGCAGCCATATCCGTACAG
CACCAGCAACATGTGCAACACCAGCAGCAGCAGCAGCAACAGTCAACCGT
GCAACACCATCAATCCCGGCAGCAAAATGAGCAGCAAAACCAGCAGCGTC
AGCAGCAACCAGCACATGGAAGAGCCAGCAGCGGCGGTGGCCACTGCCTC
ACCCACAGCATCAGCTCCATTATCAATGGGCGGTGAGAACAGTGCATTTC
GCGCTCTGCCCATGACCTTGCCGATGCCCATGACCTTGCCCACGGCATCG
GCGGCGGCCTTCGCGCTCAGCTTCGCCCGCCAGTACATAGCCAAGTACAT
GGGCACGCCCCTCAATCTGGGACATGGTTCGTCACCAATCCAGGCACAGT
CTGGACGGGATCATCAGTCGGAGGAGCGAGAGTATGAGGATGAGCAGGAG
GAGGAGGAGGTTATCAATGTGGAGCACGACGCCGAGTGAAGCTTTCTAGA
CCAT

BS01827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
toe-RA 1923 CG10704-PA 1..1923 17..1939 9615 100 Plus
toe-RB 1653 CG10704-PB 1..1653 17..1686 8060 99 Plus
eyg-RC 2013 CG10488-PC 388..659 443..714 760 85.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
toe-RA 2400 CG10704-RA 355..2278 16..1939 9620 100 Plus
toe-RB 2383 CG10704-RB 355..2261 16..1939 9330 99.1 Plus
eyg-RC 3148 CG10488-RC 791..1062 443..714 760 85.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12422632..12423270 1939..1301 3195 100 Minus
3L 28110227 3L 12423701..12424171 1118..648 2355 100 Minus
3L 28110227 3L 12427557..12427814 510..253 1290 100 Minus
3L 28110227 3L 12432076..12432314 254..16 1195 100 Minus
3L 28110227 3L 12423448..12423636 1305..1117 945 100 Minus
3L 28110227 3L 12425381..12425524 652..509 720 100 Minus
3L 28110227 3L 12465031..12465158 642..515 400 87.5 Minus
3L 28110227 3L 12464367..12464459 1250..1158 285 87.1 Minus
3L 28110227 3L 12464834..12464899 714..649 240 90.9 Minus
Blast to na_te.dros performed 2014-11-27 14:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2411 899..1005 193 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6993 904..1099 190 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6853 909..1005 179 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2897..2995 909..1004 173 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2441 909..1005 172 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6835 909..1005 168 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2298..2378 923..1005 167 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6811 930..1005 164 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6790 938..1005 160 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6866 900..1006 157 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2422 889..1004 152 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2546 904..996 150 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6966 905..1036 148 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2431 900..1004 138 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2837 953..1005 130 71.7 Plus
roo 9092 roo DM_ROO 9092bp 1084..1156 900..981 128 68.3 Plus
roo 9092 roo DM_ROO 9092bp 1091..1144 949..1005 125 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2590..2644 950..1004 122 69.1 Plus
TART-A 13424 TART-A 13424bp 104..160 961..1017 114 66.7 Plus
TART-A 13424 TART-A 13424bp 11282..11338 961..1017 114 66.7 Plus

BS01827.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:30 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
toe-RA 351..2285 11..1946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:28 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
toe-RA 356..2277 17..1938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:33 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
toe-RA 356..2277 17..1938 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:47 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
toe-RA 356..2277 17..1938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:47 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12422633..12423267 1304..1938 100 <- Minus
3L 12423450..12423634 1119..1303 100 <- Minus
3L 12423701..12424168 651..1118 100 <- Minus
3L 12425383..12425523 510..650 100 <- Minus
3L 12427558..12427812 255..509 100 <- Minus
3L 12432076..12432313 17..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:28 Download gff for BS01827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12415733..12416367 1304..1938 100 <- Minus
arm_3L 12416550..12416734 1119..1303 100 <- Minus
arm_3L 12416801..12417268 651..1118 100 <- Minus
arm_3L 12418483..12418623 510..650 100 <- Minus
arm_3L 12420658..12420912 255..509 100 <- Minus
arm_3L 12425176..12425413 17..254 100   Minus

BS01827.pep Sequence

Translation from 16 to 1938

> BS01827.pep
MATSTSPGPTRTTAAIRVSLPGAAPAIPATATAGSQSPGAIMPMAAVPLP
SHLQLLGSSAGGVGQPAAITPVSPTAATTVLAQPHSLSPSTPILTQGAPP
AAALGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLA
QHMLSQQGAVSKLLGTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIF
AWEIRERLITEGVCTNATAPSVSSINRILRNRAAERAAAEFARAASYGYA
IHPTHPHPYTSFPTWPAHHPLWGAVPLATPPGGGPAGAGGALQPGGSGSS
YGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSPD
SGSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELE
KEFDKSHYPCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQ
RDSPSTSSSPTPLVNPVVSPVSPIPVPVPVAVPESGQQKQPYPYSTSNMC
NTSSSSSNSQPCNTINPGSKMSSKTSSVSSNQHMEEPAAAVATASPTASA
PLSMGGENSAFRALPMTLPMPMTLPTASAAAFALSFARQYIAKYMGTPLN
LGHGSSPIQAQSGRDHQSEEREYEDEQEEEEVINVEHDAE*

BS01827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
toe-PA 640 CG10704-PA 1..640 1..640 3310 100 Plus
toe-PB 550 CG10704-PB 1..429 1..429 2219 100 Plus
eyg-PC 670 CG10488-PC 30..638 7..640 1056 43.5 Plus
eyg-PB 670 CG10488-PB 30..638 7..640 1056 43.5 Plus
eyg-PA 670 CG10488-PA 30..638 7..640 1056 43.5 Plus