Clone Sequence Records
BS01860.3prime Sequence
801 bp (715 high quality bases) assembled on 2005-11-30
> BS01860.3prime
ATGGTCTAGAAAGCTTTTAAACCACACAGTATCGCATTAAATATTGCCGT
GCCTTCCACTTGTTTCCATTGGCTCGGTAGATGAGGTGCAGGTTGAATGC
CACTTCATGCTGCAGACCAAGCGTAGATTCATGCTCTGCGATAAGTGGAT
GCACGGGCACGGCCAGTGCCTTTTCATAGTAGTCCACGGCCAGGTGAAGG
ATGTTGGCTTGGTGATAGATACGTCCGATGTTGTAAAAGATCTCCTGCTG
TGCGGCGCAATCTGCTAACTCATGGCCGGCAGATCGTAACTCCTTGTAGC
GCTGGCCAAAGGCCACGGCTTGGGCCACAGAAGCCGACTTGCGGAGCACC
TTCTTCTGCAGCGACAGCTGGTTAAAGGCAACGGCTATGCAGAGGGCCAC
CAGGGGATCGGGATTCTCGCGCAGAATGGGCATGTAGATGTTTAGAGCAT
ACTTAAAAGATGCGCAGTTGAGGTGATAATGGCCCTGGAATATTCGCATC
GGCTTGGTATCGACCGGATGTCGTTGCATCAGGCGGCGCATATAGCGATA
ATAACGCACTTCGTCACCCTTTTGAATCATCAGAGATAGCATGTTCCACA
GCGTTGTCTGGCTGGGCTGTTTGGCGATCAGCTCACGCAGATACGAGAAG
GCTATGGCACAGTCGTCGTTGTAGTAGCAGGTTAGTACCATAATTCTCTC
GATCTCGTGATGGTAGTAGGTGAATCTTTTTGTTGTAACCATGGCAAAGC
AGATCTTCTCAGCGGCGCTGTGCATGCCATGCTTGAAAGCCGTACGCACA
A
BS01860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-PA | 2607 | CG8950-RA | 1823..2607 | 801..17 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-RB | 3248 | CG8950-RB | 1851..2635 | 801..17 | 3925 | 100 | Minus |
| CG8950-RA | 2708 | CG8950-RA | 1851..2635 | 801..17 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17059944..17060728 | 17..801 | 3925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:22:15 has no hits.
BS01860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:16:20 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-PA | 1825..2607 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:27:49 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-PA | 1825..2607 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:55 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 1853..2640 | 13..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:38 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 1853..2640 | 13..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:38 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17059939..17060726 | 13..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:55 Download gff for
BS01860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12947444..12948231 | 13..799 | 99 | | Plus |
BS01860.5prime Sequence
852 bp (704 high quality bases) assembled on 2005-11-30
> BS01860.5prime
GAAGTTATCAGTCGACATGGCCGATTCAGATTCGAATGAGGTCCTAATTG
AGGAAATAGACAGCAACGATGTGCCGGAAAACGAATTGGAGCAGTTCCAG
GAGACAGAGCCGCTGCGCGTGGTAGACATCATCGACTGCGATACAGACGG
CGAACGGCGCTGCATCGCTGATGACGAGGAGGAGGGTGCGCTGATTAAGC
GCTACGTGCAGGGTGTTCAGTGCCTAGAGTTCCCGGACTTCTGCACCAAG
CTGGAGGCCAGCGACGAGGATGAGGAGGGCAATGATGAGGAGCCCAGTGA
GGCGGCCGGCAGCATCGAGAAGCCGAACACTTCGGCGCAAGCGAAAACGT
CACAGGAACAGTCGACGGGAAGTGGTCGTTCTGGAGGAGGTGGCTTTCGG
AAAAGCCAACTAAGCACCGCCCTGCAAGGACTGATGGGCGAGGCCAATCT
GAGCTTTGTGTACGGCCGCTATGAAACAGCCGAGCGCATCTGCATGGAGA
TCATCCGACAGAATCCACTGGCCAGTGAACCGTTTTACACGCTGGCCGAG
ATTTATGAGAACCGTGATGAGGTCAAGTTCCTGAACTTCTCCACATTGGC
GGCCCACTTGAATCCCCAGGACCGAGACATGTGGATACGTGTCTCCGATC
TGCTGGTGCAGCAGGGCAACTTGGCCCGTGCGCGTCTCATCTACACGAAG
GCCATCAAAATGCTGCCCAAAGTGTACCAGCTTCGGCTGCGTAGGGCGCA
GCTGTTGCAAAAAATGGGCGAAACCATGCCTCCATGTTTACGTACTTGAA
AATGCTGCCACTGATGCCCCCAGATGAGTGGAAAATGTGCCTGAATACGG
CC
BS01860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-PA | 2607 | CG8950-RA | 1..760 | 17..776 | 3775 | 99.8 | Plus |
| CG8950-PA | 2607 | CG8950-RA | 761..837 | 776..852 | 385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-RB | 3248 | CG8950-RB | 29..865 | 17..852 | 4145 | 99.8 | Plus |
| CG8950-RA | 2708 | CG8950-RA | 29..865 | 17..852 | 4145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17061770..17062606 | 852..17 | 4120 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:59:59 has no hits.
BS01860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:16:21 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-PA | 1..837 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:27:50 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-PA | 1..837 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:57:53 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 26..865 | 14..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:00 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 26..865 | 14..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:00 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17061770..17062609 | 14..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:57:53 Download gff for
BS01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12949275..12950114 | 14..852 | 99 | | Minus |
BS01860.complete Sequence
2639 bp assembled on 2008-01-02
GenBank Submission: FJ634664
> BS01860.complete
GAAGTTATCAGTCGACATGGCCGATTCAGATTCGAATGAGGTCCTAATTG
AGGAAATAGACAGCAACGATGTGCCGGAAAACGAATTGGAGCAGTTCCAG
GAGACAGAGCCGCTGCGCGTGGTAGACATCATCGACTGCGATACAGACGG
CGAACGGCGCTGCATCGCTGATGACGAGGAGGAGGGTGCGCTGATTAAGC
GCTACGTGCAGGGTGTTCAGTGCCTAGAGTTCCCGGACTTCTGCACCAAG
CTGGAGGCCAGCGACGAGGATGAGGAGGGCAATGATGAGGAGCCCAGTGA
GGCGGCCGGCAGCATCGAGAAGCCGAACACTTCGGCGCAAGCGAAAACGT
CACAGGAACAGTCGACGGGAAGTGGTCGTTCTGGAGGAGGTGGCTTTCGG
AAAAGCCAACTAAGCACCGCCCTGCAAGGACTGATGGGCGAGGCCAATCT
GAGCTTTGTGTACGGCCGCTATGAAACAGCCGAGCGCATCTGCATGGAGA
TCATCCGACAGAATCCACTGGCCAGTGAACCGTTTTACACGCTGGCCGAG
ATTTATGAGAACCGTGATGAGGTCAAGTTCCTGAACTTCTCCACATTGGC
GGCCCACTTGAATCCCCAGGACCGAGACATGTGGATACGTGTCTCCGATC
TGCTGGTGCAGCAGGGCAACTTGGCCCGTGCGCGTCTCATCTACACGAAG
GCCATCAAAATGCTGCCCAAAGTGTACCAGCTTCGGCTGCGTAAGGCGCA
GCTGTTGCAAAAAATGGGCGAAACCAATGCCTCCATGTTTACGTACTTGA
AAATGCTGCCACTGATGCCCCCAGATGAGTGGAAAATGTGCCTGAATACG
GCCAAGAACGTAGCCCGATACTTTCATGTGCTGGAGAAGCACTCGCTTGC
CCTAGAGGCCATGGAGGGGGCGTACAGTGTGTGTGGTGCGCGATTCACCC
TGGAGGATATAAACATCTACTTGGAACTGCTGATCCTAAATAAACAGTAT
GCCAAGGTTCTGCGGTGCCTGCGAGAGCGCACCAATTTTGAGCTGGAGAA
CGACCAAGAGGAGAGTCTGGAACTTATATACTTCTGCGAGATCCCAGATG
ACTATGTCCCCGAGCTGCGGGCCAAGCTCTGCGTCAGTCTCATCCACATG
CGGGCCCACCATTTGCTGGGCTATCTTATCCAGAATGTCCAAGAGCACAT
CACATTGACGGCGGATAGAGTCGAGCTATACATGGACATCACCGAGGCTT
TGATGCAGGAGCACAAGTATGCCGAAGCCATTGCGCTGATGAGTCCCATA
ACCGATGGCGACACCGTAGAGTGTCCGGCATTCGTGTGGCTGCGGCAGGC
CGAGTGTCTTCGCCAGCTGAACCGAACCAACGAGGCCATTCAGAGCTACG
AGAAGGTAGTGCAACTGGCGCCCTTCTGCTACGACGCGCGGTTCACCCTC
TCCGCTCTGCTAAAACAGCAAGGCCGGCACGAGGAGGCTGTCCAGGCATT
GGAGCAACCGGGAGAGGCTGAGGGCCAGCCTCTTATTGCCCGCCTGCTGT
ATGAGAGATGTGTAATGCTACAGCAGATTGGGCGCATTGAGGAGTTCTTG
GATGTGGGATATGCCCTGCTCAGTCGGCACTCCATCAAGTTGTACAACCG
CGAGGAGATGATGGCGGCCGCAAATGGAGGCAGTGCTTACAATTCGGAGA
GCCTCAAGACCATCATCCAAATGAGGAGCAAGGCGGTTGACAACTCTGCG
GAGCAGGATCTTCAGGATCCTGCTAAAAATGCCGCCAGCGAAACCTCCGA
TCTGACCGTCAAAGATGAATTTGAGCTCTTTCGGGAGCTTGTGCGTACGG
CTTTCAAGCATGGCATGCACAGCGCCGCTGAGAAGATCTGCTTTGCCATG
GTTACAACAAAAAGATTCACCTACTACCATCACGAGATCGAGAGAATTAT
GGTACTAACCTGCTACTACAACGACGACTGTGCCATAGCCTTCTCGTATC
TGCGTGAGCTGATCGCCAAACAGCCCAGCCAGACAACGCTGTGGAACATG
CTATCTCTGATGATTCAAAAGGGTGACGAAGTGCGTTATTATCGCTATAT
GCGCCGCCTGATGCAACGACATCCGGTCGATACCAAGCCGATGCGAATAT
TCCAGGGCCATTATCACCTCAACTGCGCATCTTTTAAGTATGCTCTAAAC
ATCTACATGCCCATTCTGCGCGAGAATCCCGATCCCCTGGTGGCCCTCTG
CATAGCCGTTGCCTTTAACCAGCTGTCGCTGCAGAAGAAGGTGCTCCGCA
AGTCGGCTTCTGTGGCCCAAGCCGTGGCCTTTGGCCAGCGCTACAAGGAG
TTACGATCTGCCGGCCATGAGTTAGCAGATTGCGCCGCACAGCAGGAGAT
CTTTTACAACATCGGACGTATCTATCACCAAGCCAACATCCTTCACCTGG
CCGTGGACTACTATGAAAAGGCACTGGCCGTGCCCGTGCATCCACTTATC
GCAGAGCATGAATCTACGCTTGGTCTGCAGCATGAAGTGGCATTCAACCT
GCACCTCATCTACCGAGCCAATGGAAACAAGTGGAAGGCACGGCAATATT
TAATGCGATACTGTGTGGTTTAAAAGCTTTCTAGACCAT
BS01860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-RB | 2607 | CG8950-PB | 1..2607 | 17..2623 | 13035 | 100 | Plus |
| CG8950-RA | 2607 | CG8950-PA | 1..2607 | 17..2623 | 13035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-RB | 3248 | CG8950-RB | 29..2635 | 17..2623 | 13035 | 100 | Plus |
| CG8950-RA | 2708 | CG8950-RA | 29..2635 | 17..2623 | 13035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17060857..17062606 | 1766..17 | 8750 | 100 | Minus |
| 2R | 25286936 | 2R | 17059944..17060803 | 2623..1764 | 4300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:54:37 has no hits.
BS01860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:48 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 1..2607 | 17..2623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:57 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 29..2633 | 17..2621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:12 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 29..2633 | 17..2621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:48 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 26..2640 | 14..2627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:18 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8950-RA | 29..2633 | 17..2621 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:18 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17059946..17060801 | 1766..2621 | 100 | <- | Minus |
| 2R | 17060858..17062606 | 17..1765 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:12 Download gff for
BS01860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12947451..12948306 | 1766..2621 | 100 | <- | Minus |
| arm_2R | 12948363..12950111 | 17..1765 | 100 | | Minus |
BS01860.pep Sequence
Translation from 16 to 2622
> BS01860.pep
MADSDSNEVLIEEIDSNDVPENELEQFQETEPLRVVDIIDCDTDGERRCI
ADDEEEGALIKRYVQGVQCLEFPDFCTKLEASDEDEEGNDEEPSEAAGSI
EKPNTSAQAKTSQEQSTGSGRSGGGGFRKSQLSTALQGLMGEANLSFVYG
RYETAERICMEIIRQNPLASEPFYTLAEIYENRDEVKFLNFSTLAAHLNP
QDRDMWIRVSDLLVQQGNLARARLIYTKAIKMLPKVYQLRLRKAQLLQKM
GETNASMFTYLKMLPLMPPDEWKMCLNTAKNVARYFHVLEKHSLALEAME
GAYSVCGARFTLEDINIYLELLILNKQYAKVLRCLRERTNFELENDQEES
LELIYFCEIPDDYVPELRAKLCVSLIHMRAHHLLGYLIQNVQEHITLTAD
RVELYMDITEALMQEHKYAEAIALMSPITDGDTVECPAFVWLRQAECLRQ
LNRTNEAIQSYEKVVQLAPFCYDARFTLSALLKQQGRHEEAVQALEQPGE
AEGQPLIARLLYERCVMLQQIGRIEEFLDVGYALLSRHSIKLYNREEMMA
AANGGSAYNSESLKTIIQMRSKAVDNSAEQDLQDPAKNAASETSDLTVKD
EFELFRELVRTAFKHGMHSAAEKICFAMVTTKRFTYYHHEIERIMVLTCY
YNDDCAIAFSYLRELIAKQPSQTTLWNMLSLMIQKGDEVRYYRYMRRLMQ
RHPVDTKPMRIFQGHYHLNCASFKYALNIYMPILRENPDPLVALCIAVAF
NQLSLQKKVLRKSASVAQAVAFGQRYKELRSAGHELADCAAQQEIFYNIG
RIYHQANILHLAVDYYEKALAVPVHPLIAEHESTLGLQHEVAFNLHLIYR
ANGNKWKARQYLMRYCVV*
BS01860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8950-PB | 868 | CG8950-PB | 1..868 | 1..868 | 4492 | 100 | Plus |
| CG8950-PA | 868 | CG8950-PA | 1..868 | 1..868 | 4492 | 100 | Plus |
