Clone Sequence Records
BS01954.3prime Sequence
676 bp (673 high quality bases) assembled on 2005-11-30
> BS01954.3prime
ATGGTCTAGAAAGCTTTCAATGCTCTCCGCGCAAAAGCTCCATTAGCAAA
TTGAAATCAGCTCCATCGCGAGTCTTGATCGTCAACATCTCCTTGCCAAG
CTGGCACGTTCGCTGCAAATCAGGAATGCGTAGCAAAAGCTCCCCAAACT
TGGATGGCGTGTCAGGATAATGCGCCAGGGTGTAAGCTTGCAAGCTCTGC
AAAGCTTTTTCCTGACACTCGCGCACCTTTACCGCTTCCTGTAACTCTGT
CGTATCTGACTGCAACAGCACAATAACTTTCATGGCAACATATTCGTAGC
GATCAACGCGCAATCGCCTCAGGTGATCTGTTAGGTTGAGCATCCGTTCA
ATGCAAGTCTGCAAGCCATTTGATTTGGCCTGCGATAGGGTTATCTTCCT
GCCTTGTGACATTTTAATCTCTCCAGGAGTATCAATTGATCTAAAACAGC
AGGAGAAGAGCAACAGCTCGCACCACGAGTTAATGAGCAAGCAGATTTGG
TCATCGATCGAAATGTTCTTAAAAAGCGGCAAGCTCTTGCACCATTTGAC
GATTTTATAAAGACGGTGATCAGCCACGTTGCAGAGATGAGCGATAAGAT
CAGGATTGGCATTCTCGCCATTGGACGAGAGACCAGCACTAGCCAGTAGT
GGATTGGTGAGTTGTGCATGGGCGCC
BS01954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8676-PB | 2427 | Hr39-RB | 1768..2427 | 676..17 | 3300 | 100 | Minus |
| CG8676-PA | 2427 | Hr39-RA | 1768..2427 | 676..17 | 3300 | 100 | Minus |
| CG8676-PD | 2427 | Hr39-RD | 1768..2427 | 676..17 | 3300 | 100 | Minus |
| CG8676-PC | 2106 | Hr39-RC | 1768..2085 | 676..359 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 4828 | CG8676-RD | 2323..2982 | 676..17 | 3300 | 100 | Minus |
| Hr39-RA | 3291 | CG8676-RA | 2265..2924 | 676..17 | 3300 | 100 | Minus |
| Hr39-RB | 4844 | CG8676-RB | 2339..2998 | 676..17 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21255661..21255828 | 676..509 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 21257101..21257257 | 257..101 | 785 | 100 | Minus |
| 2L | 23513712 | 2L | 21255896..21256046 | 509..359 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 21256943..21257048 | 361..256 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 21257743..21257829 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:29:36 has no hits.
BS01954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:02 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-PB | 1768..2427 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:09 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8676-PD | 1768..2427 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:03:30 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 2339..3003 | 11..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:55 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 2339..3003 | 11..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:55 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21255661..21255828 | 509..676 | 100 | -> | Minus |
| 2L | 21255897..21256046 | 359..508 | 100 | -> | Minus |
| 2L | 21256946..21257048 | 256..358 | 100 | -> | Minus |
| 2L | 21257103..21257257 | 101..255 | 100 | -> | Minus |
| 2L | 21257746..21257834 | 11..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:03:30 Download gff for
BS01954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21255661..21255828 | 509..676 | 100 | -> | Minus |
| arm_2L | 21255897..21256046 | 359..508 | 100 | -> | Minus |
| arm_2L | 21256946..21257048 | 256..358 | 100 | -> | Minus |
| arm_2L | 21257103..21257257 | 101..255 | 100 | -> | Minus |
| arm_2L | 21257746..21257834 | 11..100 | 96 | | Minus |
BS01954.5prime Sequence
840 bp (388 high quality bases) assembled on 2005-11-30
> BS01954.5prime
GAAGTTATCAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGC
AAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATG
TGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGG
GGGAGCCACTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCG
AACTAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCA
AACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCA
TAGGGAGTCCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGG
TTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCTGTGTCCTGG
GAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGA
AATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCAC
AACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCA
GGCGAGATGCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACA
TCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCA
ATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCA
CGTAGCAAGTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAG
TCCCGACTCCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGT
CGCCTCTGACGTCGCGCCACGCCCCTACACTCCGTCTCTG
BS01954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8676-PC | 2106 | Hr39-RC | 1..809 | 17..825 | 3995 | 99.7 | Plus |
| CG8676-PB | 2427 | Hr39-RB | 1..809 | 17..825 | 3995 | 99.7 | Plus |
| CG8676-PA | 2427 | Hr39-RA | 1..809 | 17..825 | 3995 | 99.7 | Plus |
| CG8676-PD | 2427 | Hr39-RD | 1..809 | 17..825 | 3995 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 4828 | CG8676-RD | 556..1380 | 17..840 | 4070 | 99.6 | Plus |
| Hr39-RA | 3291 | CG8676-RA | 498..1322 | 17..840 | 4070 | 99.6 | Plus |
| Hr39-RB | 4844 | CG8676-RB | 572..1396 | 17..840 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21253670..21254494 | 17..840 | 4045 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:31:08 has no hits.
BS01954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:03 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-PD | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:10 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8676-PD | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:49:15 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1396 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:58 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1396 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:58 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21253670..21254494 | 17..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:49:15 Download gff for
BS01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21253670..21254494 | 17..840 | 99 | | Plus |
BS01954.complete Sequence
2459 bp assembled on 2009-08-24
GenBank Submission: KX796440
> BS01954.complete
GAAGTTATCAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGC
AAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATG
TGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGG
GGGAGCCACTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCG
AACTAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCA
AACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCA
TAGGGAGTCCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGG
TTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGG
GAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGA
AATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCAC
AACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCA
GGCGAGATGCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACA
TCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCA
ATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCA
CGTAGCAAGTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAG
TCCCGACTCCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGT
CGCCTCTGACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAAC
AACAGCGACGCCTCGCACAGTAGCTGCTACAGCTATAGCTCCGAATTCAG
TCCCACACACTCGCCCATTCAAGCGCGTCATGCCCCACCCGCCGGCACGC
TCTATGGCAACCACCATGGTATTTACCGCCAGATGAAGGTGGAAGCCTCA
TCCACTGTGCCGTCCAGTGGGCAGGAGGCGCAGAACCTGAGTATGGACTC
TGCCTCTAGCAATCTGGATACAGTGGGCTTAGGATCTTCGCACCCCGCAT
CTCCGGCGGGCATATCACGTCAGCAGTTGATCAACTCGCCCTGCCCCATC
TGCGGTGACAAGATCAGCGGATTTCATTACGGGATTTTCTCCTGCGAGTC
TTGCAAGGGCTTCTTCAAGCGCACCGTGCAAAATCGCAAGAACTACGTGT
GCGTGCGTGGTGGACCATGTCAGGTCAGCATTTCCACGCGCAAGAAATGT
CCAGCCTGCCGCTTCGAGAAGTGTCTGCAGAAGGGAATGAAACTAGAAGC
GATTCGGGAGGACCGAACCCGTGGCGGCCGCTCCACATACCAGTGCTCCT
ACACGCTGCCCAACTCAATGCTTAGTCCGCTGCTTAGTCCTGATCAAGCG
GCAGCAGCTGCCGCCGCAGCAGCAGTGGCAAGTCAGCAGCAGCCGCACCA
GCGACTACATCAACTAAATGGATTTGGAGGTGTACCCATTCCCTGCTCTA
CTTCTCTTCCAGCCAGCCCTAGTTTGGCAGGAACTTCGGTCAAGTCGGAA
GAGATGGCGGAGACGGGCAAGCAAAGCCTCCGAACGGGAAGCGTACCACC
ACTACTGCAGGAAATCATGGATGTAGAGCATCTGTGGCAGTACACCGATG
CAGAGCTGGCCCGCATCAACCAACCACTGTCCGCATTCGCCTCTGGCAGC
TCTTCGTCGTCGTCATCGTCAGGTACATCCTCAGGCGCCCATGCACAACT
CACCAATCCACTACTGGCTAGTGCTGGTCTCTCGTCCAATGGCGAGAATG
CCAATCCTGATCTTATCGCTCATCTCTGCAACGTGGCTGATCACCGTCTT
TATAAAATCGTCAAATGGTGCAAGAGCTTGCCGCTTTTTAAGAACATTTC
GATCGATGACCAAATCTGCTTGCTCATTAACTCGTGGTGCGAGCTGTTGC
TCTTCTCCTGCTGTTTTAGATCAATTGATACTCCTGGAGAGATTAAAATG
TCACAAGGCAGGAAGATAACCCTATCGCAGGCCAAATCAAATGGCTTGCA
GACTTGCATTGAACGGATGCTCAACCTAACAGATCACCTGAGGCGATTGC
GCGTTGATCGCTACGAATATGTTGCCATGAAAGTTATTGTGCTGTTGCAG
TCAGATACGACAGAGTTACAGGAAGCGGTAAAGGTGCGCGAGTGTCAGGA
AAAAGCTTTGCAGAGCTTGCAAGCTTACACCCTGGCGCATTATCCTGACA
CGCCATCCAAGTTTGGGGAGCTTTTGCTACGCATTCCTGATTTGCAGCGA
ACGTGCCAGCTTGGCAAGGAGATGTTGACGATCAAGACTCGCGATGGAGC
TGATTTCAATTTGCTAATGGAGCTTTTGCGCGGAGAGCATTGAAAGCTTT
CTAGACCAT
BS01954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 2427 | CG8676-PD | 1..2427 | 17..2443 | 12135 | 100 | Plus |
| Hr39-RA | 2427 | CG8676-PA | 1..2427 | 17..2443 | 12135 | 100 | Plus |
| Hr39-RB | 2427 | CG8676-PB | 1..2427 | 17..2443 | 12135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 4828 | CG8676-RD | 556..2982 | 17..2443 | 12135 | 100 | Plus |
| Hr39-RA | 3291 | CG8676-RA | 498..2924 | 17..2443 | 12135 | 100 | Plus |
| Hr39-RB | 4844 | CG8676-RB | 572..2998 | 17..2443 | 12135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21253670..21255314 | 17..1661 | 8225 | 100 | Plus |
| 2L | 23513712 | 2L | 21255535..21255828 | 1658..1951 | 1470 | 100 | Plus |
| 2L | 23513712 | 2L | 21257101..21257257 | 2203..2359 | 785 | 100 | Plus |
| 2L | 23513712 | 2L | 21255896..21256046 | 1951..2101 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 21256943..21257048 | 2099..2204 | 530 | 100 | Plus |
| 2L | 23513712 | 2L | 21257743..21257829 | 2357..2443 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 18763448..18763536 | 1230..1142 | 190 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:28:01 has no hits.
BS01954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:40 Download gff for
BS01954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RD | 569..2994 | 17..2442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:25 Download gff for
BS01954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..2997 | 17..2442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:12 Download gff for
BS01954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..2997 | 17..2442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:12 Download gff for
BS01954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21253670..21255313 | 17..1660 | 100 | -> | Plus |
| 2L | 21255538..21255828 | 1661..1951 | 100 | -> | Plus |
| 2L | 21255897..21256046 | 1952..2101 | 100 | -> | Plus |
| 2L | 21256946..21257048 | 2102..2204 | 100 | -> | Plus |
| 2L | 21257103..21257257 | 2205..2359 | 100 | -> | Plus |
| 2L | 21257746..21257828 | 2360..2442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:25 Download gff for
BS01954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21253670..21255313 | 17..1660 | 100 | -> | Plus |
| arm_2L | 21255538..21255828 | 1661..1951 | 100 | -> | Plus |
| arm_2L | 21255897..21256046 | 1952..2101 | 100 | -> | Plus |
| arm_2L | 21256946..21257048 | 2102..2204 | 100 | -> | Plus |
| arm_2L | 21257103..21257257 | 2205..2359 | 100 | -> | Plus |
| arm_2L | 21257746..21257828 | 2360..2442 | 100 | | Plus |
BS01954.pep Sequence
Translation from 16 to 2442
> BS01954.pep
MPNMSSIKAEQQSGPLGGSSGYQVPVNMCTTTVANTTTTLGSSAGGATGS
RHNVSVTNIKCELDELPSPNGNMVPVIANYVHGSLRIPLSGHSNHRESDS
EEELASIENLKVRRRTAADKNGPRPMSWEGELSDTEVNGGEELMEMEPTI
KSEVVPAVAPPQPVCALQPIKTELENIAGEMQIQEKCYPQSNTQHHAATK
LKVAPTQSDPINLKFEPPLGDNSPLLAARSKSSSGGHLPLPTNPSPDSAI
HSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSP
IQARHAPPAGTLYGNHHGIYRQMKVEASSTVPSSGQEAQNLSMDSASSNL
DTVGLGSSHPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFF
KRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDR
TRGGRSTYQCSYTLPNSMLSPLLSPDQAAAAAAAAAVASQQQPHQRLHQL
NGFGGVPIPCSTSLPASPSLAGTSVKSEEMAETGKQSLRTGSVPPLLQEI
MDVEHLWQYTDAELARINQPLSAFASGSSSSSSSSGTSSGAHAQLTNPLL
ASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQI
CLLINSWCELLLFSCCFRSIDTPGEIKMSQGRKITLSQAKSNGLQTCIER
MLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELQEAVKVRECQEKALQS
LQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLL
MELLRGEH*
BS01954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-PD | 808 | CG8676-PD | 1..808 | 1..808 | 4214 | 100 | Plus |
| Hr39-PA | 808 | CG8676-PA | 1..808 | 1..808 | 4214 | 100 | Plus |
| Hr39-PB | 808 | CG8676-PB | 1..808 | 1..808 | 4214 | 100 | Plus |
| Hr39-PC | 701 | CG8676-PC | 1..698 | 1..698 | 3639 | 99.6 | Plus |
| ftz-f1-PD | 853 | CG4059-PD | 150..553 | 278..633 | 374 | 30.1 | Plus |
