Clone Sequence Records
BS02206.5prime Sequence
870 bp (822 high quality bases) assembled on 2005-11-28
> BS02206.5prime
CAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGGCGACAGTC
GGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGACAACGAAAA
CTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGAGTTCGGAA
AATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGGCCGACAAA
GGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGCCGCAAGTT
TGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTTCTCCGTGA
AGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGCTGTTCGAC
TGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTACGAGATCAT
GTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCATGTGATCT
TCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCCGCTGCAAA
GATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCCGACAACAC
GTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGCAACCTGGAGG
ACGACTGGGACTTCCTGGCCCCCAAGAAGATCAAGGATCCCACCGCCACC
AAGCCCGAAGACTGGGACGATAGGGCCACCATTCCCGATCCCGATGACAA
GAAGCCCGAGGACTGGGACAAACCAGAGCACATTCCCGACCCAGATGCCA
CAAAGCCTGAGGATTGGGACGATGAGATGGACGGCGAGTGGGAGCCACCG
ATGATCGACAACCCTGAGTTCAAGGGCGAGTGGCAGCCAAAGCAGCTGGG
ACACCCCAACTACAAGGGCG
BS02206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9429-PA | 1221 | Crc-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1677 | CG9429-RB | 85..948 | 7..870 | 4275 | 99.8 | Plus |
| Crc-RA | 1430 | CG9429-RA | 85..948 | 7..870 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9629707..9630182 | 675..200 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 9629420..9629616 | 870..674 | 940 | 98.5 | Minus |
| 3R | 32079331 | 3R | 9630448..9630554 | 202..96 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 9630678..9630767 | 96..7 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:40:31 has no hits.
BS02206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:22 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-PA | 1..862 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:35 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9429-PA | 1..862 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:52:38 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..948 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:03 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..948 | 1..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:03 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9629420..9629615 | 675..870 | 98 | <- | Minus |
| 3R | 9629708..9630180 | 202..674 | 100 | <- | Minus |
| 3R | 9630449..9630553 | 97..201 | 100 | <- | Minus |
| 3R | 9630678..9630772 | 1..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:52:38 Download gff for
BS02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5455142..5455337 | 675..870 | 98 | <- | Minus |
| arm_3R | 5455430..5455902 | 202..674 | 100 | <- | Minus |
| arm_3R | 5456171..5456275 | 97..201 | 100 | <- | Minus |
| arm_3R | 5456400..5456494 | 1..96 | 96 | | Minus |
BS02206.complete Sequence
1255 bp (1255 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634665
> BS02206.complete
GAAGTTATCAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGG
CGACAGTCGGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGAC
AACGAAAACTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGA
GTTCGGAAAATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGG
CCGACAAAGGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGC
CGCAAGTTTGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTT
CTCCGTGAAGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGC
TGTTCGACTGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTAC
GAGATCATGTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCA
TGTGATCTTCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCC
GCTGCAAAGATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCC
GACAACACGTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGCAA
CCTGGAGGACGACTGGGACTTCCTGGCCCCCAAGAAGATCAAGGATCCCA
CCGCCACCAAGCCCGAAGACTGGGACGATAGGGCCACCATTCCCGATCCC
GATGACAAGAAGCCCGAGGACTGGGACAAACCAGAGCACATTCCCGACCC
AGATGCCACAAAGCCTGAGGATTGGGACGATGAGATGGACGGCGAGTGGG
AGCCACCGATGATCGACAACCCTGAGTTCAAGGGCGAGTGGCAGCCAAAG
CAGCTGGACAACCCCAACTACAAGGGCGCCTGGGAGCATCCCGAGATCGC
CAATCCCGAGTATGTGCCCGACGACAAGCTGTATCTGCGCAAGGAGATCT
GCACCCTGGGCTTCGATCTCTGGCAGGTCAAGTCCGGCACTATCTTCGAC
AACGTCCTGATCACGGACGACGTGGAGCTGGCCGCTAAGGCTGCTGCCGA
AGTCAAGAACACCCAGGCGGGCGAGAAGAAAATGAAGGAGGCCCAGGATG
AGGTGCAGCGCAAGAAGGACGAGGAGGAGGCGAAAAAGGCTTCCGACAAG
GACGATGAGGACGAGGATGATGACGATGAGGAGAAGGATGATGAATCTAA
GCAAGACAAAGATCAAAGCGAACACGACGAATTGTAACGAAGCTTTCTAG
ACCAT
BS02206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1221 | CG9429-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| Crc-RA | 1221 | CG9429-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1677 | CG9429-RB | 85..1307 | 15..1237 | 6115 | 100 | Plus |
| Crc-RA | 1430 | CG9429-RA | 85..1307 | 15..1237 | 6115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9629061..9629616 | 1237..682 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 9629707..9630182 | 683..208 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 9630448..9630554 | 210..104 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 9630678..9630767 | 104..15 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:02:36 has no hits.
BS02206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:18 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 1..1221 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:59 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 112..1351 | 7..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:03 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 87..1308 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:18 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 112..1351 | 7..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:22 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 87..1308 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:22 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9629059..9629615 | 683..1239 | 99 | <- | Minus |
| 3R | 9629708..9630180 | 210..682 | 100 | <- | Minus |
| 3R | 9630449..9630553 | 105..209 | 100 | <- | Minus |
| 3R | 9630678..9630765 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:03 Download gff for
BS02206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5454781..5455337 | 683..1239 | 99 | <- | Minus |
| arm_3R | 5455430..5455902 | 210..682 | 100 | <- | Minus |
| arm_3R | 5456171..5456275 | 105..209 | 100 | <- | Minus |
| arm_3R | 5456400..5456487 | 17..104 | 100 | | Minus |
BS02206.pep Sequence
Translation from 16 to 1236
> BS02206.pep
MMWCKTVIVLLATVGFISAEVYLKENFDNENWEDTWIYSKHPGKEFGKFV
LTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHE
QNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSY
KGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDW
DFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWDKPEHIPDPDATKP
EDWDDEMDGEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYV
PDDKLYLRKEICTLGFDLWQVKSGTIFDNVLITDDVELAAKAAAEVKNTQ
AGEKKMKEAQDEVQRKKDEEEAKKASDKDDEDEDDDDEEKDDESKQDKDQ
SEHDEL*
BS02206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-PB | 406 | CG9429-PB | 1..406 | 1..406 | 2237 | 100 | Plus |
| Crc-PA | 406 | CG9429-PA | 1..406 | 1..406 | 2237 | 100 | Plus |
| Cnx99A-PE | 604 | CG11958-PE | 149..551 | 88..397 | 570 | 32.7 | Plus |
| CG1924-PA | 570 | CG1924-PA | 145..437 | 88..344 | 564 | 39.1 | Plus |
| Cnx99A-PD | 605 | CG11958-PD | 149..552 | 88..397 | 560 | 32.8 | Plus |
