Clone BS02209 Report

Search the DGRC for BS02209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:22
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptGABPI-RA
Protein status:BS02209.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02209.5prime Sequence

827 bp (797 high quality bases) assembled on 2005-11-28

> BS02209.5prime
CAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTCTTTCTGCA
GCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAACGGGAGTCT
CTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATCCCACATCC
TAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCACAAGACTT
GTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATGCTCATCGC
CTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAAGCGAATCT
CGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGCTGGGATTG
GCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACGCTGGTGGG
CTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCACGCGGACAA
ACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGATCATCATA
TTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAGAACTACGC
GTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTCCGCCAAGG
CACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCACGCCCAAG
GATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAGCAGGCAGA
GGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGATGATGACG
AGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGCACGGTCAG
CCCCATATCTGCGAGATCTGCCCGAAG

BS02209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17257-PB 1263 CG17257-RB 1..814 9..822 4045 99.8 Plus
CG17257-PA 1263 CG17257-RA 1..814 9..822 4045 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1650 CG17257-RA 222..1040 9..827 4065 99.8 Plus
GABPI-RB 1556 CG17257-RB 128..946 9..827 4065 99.8 Plus
GABPI-RD 1450 CG17257-RD 38..840 25..827 3985 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031630 195..827 3135 99.7 Plus
2L 23513712 2L 3030760..3030947 9..196 940 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:33:47 has no hits.

BS02209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:23 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PB 1..819 9..827 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:36 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PA 1..819 9..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:49:45 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 124..949 1..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:48 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 121..946 1..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:48 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3030753..3030947 1..196 97 -> Plus
2L 3031000..3031630 197..827 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:49:45 Download gff for BS02209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3030753..3030947 1..196 97 -> Plus
arm_2L 3031000..3031630 197..827 99   Plus

BS02209.complete Sequence

1297 bp (1297 high quality bases) assembled on 2005-06-23

> BS02209.complete
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCCAAGGCGG
GCATACCACTGTCCCGTCTGCGGAACCTGCGTGAAGAGGCGCGATCATCA
CAGCTACTGGCTAAACTGCTGCATTGGCGAGCGGAACTACGTGTGGTACA
TTGTTGGACTGGCCCTGTCGGAGATCGCTCTGCTGCTCGGCGCAAACTTG
ACCCTCACTTCCATTTGCCATCCGTTTATGGTGGTGCGACCGCTTGGTTA
TCCAGTTCTTTTGCCCGACGACTGCAGTGAGGTGTTCGAAGGCTTCGACC
TCGGAATCTCCTTTGTGGTGGCTTGCTACGCTCTGCTCATTTCTTCCTAC
ATAGCCTTTATACTCGCTAGACAGGCTTACTTGTGGTGGAAGGGATCCAC
CTTGCACGAATACAAGCGCACCTCCAACGCCGCAGGACGCAACAGAATCT
GGAGCAACTGGCGAGCCATCTTAAAGTGACGAAGCTTTCTAGACCAT

BS02209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1263 CG17257-PA 1..1263 17..1279 6315 100 Plus
GABPI-RB 1263 CG17257-PB 1..1263 17..1279 6315 100 Plus
GABPI-RD 1032 CG17257-PD 1..1032 248..1279 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1650 CG17257-RA 222..1485 17..1280 6320 100 Plus
GABPI-RB 1556 CG17257-RB 128..1391 17..1280 6320 100 Plus
GABPI-RD 1450 CG17257-RD 38..1285 33..1280 6240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031893 203..1098 4480 100 Plus
2L 23513712 2L 3030760..3030947 17..204 940 100 Plus
2L 23513712 2L 3031954..3032135 1099..1280 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:58 has no hits.

BS02209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:19 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:01 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 196..1466 12..1286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:39:04 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 136..1394 22..1281 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:19 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 196..1466 12..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:38 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 133..1391 22..1281 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:38 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030765..3030947 22..204 100 -> Plus
2L 3031000..3031893 205..1098 100 -> Plus
2L 3031954..3032135 1099..1281 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:04 Download gff for BS02209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3030765..3030947 22..204 100 -> Plus
arm_2L 3031000..3031893 205..1098 100 -> Plus
arm_2L 3031954..3032135 1099..1281 99   Plus

BS02209.pep Sequence

Translation from 16 to 1278

> BS02209.pep
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILK*

BS02209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-PA 420 CG17257-PA 1..420 1..420 2230 100 Plus
GABPI-PB 420 CG17257-PB 1..420 1..420 2230 100 Plus
GABPI-PD 343 CG17257-PD 1..343 78..420 1809 100 Plus
GABPI-PC 343 CG17257-PC 1..343 78..420 1809 100 Plus
Dnz1-PA 276 CG6627-PA 103..168 267..326 159 40.9 Plus