Clone Sequence Records
BS02209.5prime Sequence
827 bp (797 high quality bases) assembled on 2005-11-28
> BS02209.5prime
CAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTCTTTCTGCA
GCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAACGGGAGTCT
CTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATCCCACATCC
TAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCACAAGACTT
GTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATGCTCATCGC
CTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAAGCGAATCT
CGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGCTGGGATTG
GCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACGCTGGTGGG
CTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCACGCGGACAA
ACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGATCATCATA
TTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAGAACTACGC
GTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTCCGCCAAGG
CACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCACGCCCAAG
GATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAGCAGGCAGA
GGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGATGATGACG
AGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGCACGGTCAG
CCCCATATCTGCGAGATCTGCCCGAAG
BS02209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17257-PB | 1263 | CG17257-RB | 1..814 | 9..822 | 4045 | 99.8 | Plus |
CG17257-PA | 1263 | CG17257-RA | 1..814 | 9..822 | 4045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1650 | CG17257-RA | 222..1040 | 9..827 | 4065 | 99.8 | Plus |
GABPI-RB | 1556 | CG17257-RB | 128..946 | 9..827 | 4065 | 99.8 | Plus |
GABPI-RD | 1450 | CG17257-RD | 38..840 | 25..827 | 3985 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3030998..3031630 | 195..827 | 3135 | 99.7 | Plus |
2L | 23513712 | 2L | 3030760..3030947 | 9..196 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:33:47 has no hits.
BS02209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:23 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PB | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:36 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:49:45 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 124..949 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:48 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 121..946 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:48 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3030753..3030947 | 1..196 | 97 | -> | Plus |
2L | 3031000..3031630 | 197..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:49:45 Download gff for
BS02209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3030753..3030947 | 1..196 | 97 | -> | Plus |
arm_2L | 3031000..3031630 | 197..827 | 99 | | Plus |
BS02209.complete Sequence
1297 bp (1297 high quality bases) assembled on 2005-06-23
> BS02209.complete
GAAGTTATCAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTC
TTTCTGCAGCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAAC
GGGAGTCTCTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATC
CCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCA
CAAGACTTGTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATG
CTCATCGCCTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAA
GCGAATCTCGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGC
TGGGATTGGCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACG
CTGGTGGGCTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCAC
GCGGACAAACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGA
TCATCATATTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAG
AACTACGCGTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTC
CGCCAAGGCACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCA
CGCCCAAGGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAG
CAGGCAGAGGCCCAGACCACACTCCAGATGGAGAGTGTGCTGAGTTTGGA
TGATGACGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTGATGC
ACGGTCAGCCCAATATCTGCGAGATCTGCCGGAAGGTTACTCCAAGGCGG
GCATACCACTGTCCCGTCTGCGGAACCTGCGTGAAGAGGCGCGATCATCA
CAGCTACTGGCTAAACTGCTGCATTGGCGAGCGGAACTACGTGTGGTACA
TTGTTGGACTGGCCCTGTCGGAGATCGCTCTGCTGCTCGGCGCAAACTTG
ACCCTCACTTCCATTTGCCATCCGTTTATGGTGGTGCGACCGCTTGGTTA
TCCAGTTCTTTTGCCCGACGACTGCAGTGAGGTGTTCGAAGGCTTCGACC
TCGGAATCTCCTTTGTGGTGGCTTGCTACGCTCTGCTCATTTCTTCCTAC
ATAGCCTTTATACTCGCTAGACAGGCTTACTTGTGGTGGAAGGGATCCAC
CTTGCACGAATACAAGCGCACCTCCAACGCCGCAGGACGCAACAGAATCT
GGAGCAACTGGCGAGCCATCTTAAAGTGACGAAGCTTTCTAGACCAT
BS02209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1263 | CG17257-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
GABPI-RB | 1263 | CG17257-PB | 1..1263 | 17..1279 | 6315 | 100 | Plus |
GABPI-RD | 1032 | CG17257-PD | 1..1032 | 248..1279 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-RA | 1650 | CG17257-RA | 222..1485 | 17..1280 | 6320 | 100 | Plus |
GABPI-RB | 1556 | CG17257-RB | 128..1391 | 17..1280 | 6320 | 100 | Plus |
GABPI-RD | 1450 | CG17257-RD | 38..1285 | 33..1280 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3030998..3031893 | 203..1098 | 4480 | 100 | Plus |
2L | 23513712 | 2L | 3030760..3030947 | 17..204 | 940 | 100 | Plus |
2L | 23513712 | 2L | 3031954..3032135 | 1099..1280 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:58 has no hits.
BS02209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:19 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:01 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 196..1466 | 12..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:39:04 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 136..1394 | 22..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:19 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17257-RA | 196..1466 | 12..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:38 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABPI-RB | 133..1391 | 22..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:38 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3030765..3030947 | 22..204 | 100 | -> | Plus |
2L | 3031000..3031893 | 205..1098 | 100 | -> | Plus |
2L | 3031954..3032135 | 1099..1281 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:04 Download gff for
BS02209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3030765..3030947 | 22..204 | 100 | -> | Plus |
arm_2L | 3031000..3031893 | 205..1098 | 100 | -> | Plus |
arm_2L | 3031954..3032135 | 1099..1281 | 99 | | Plus |
BS02209.pep Sequence
Translation from 16 to 1278
> BS02209.pep
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILK*
BS02209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABPI-PA | 420 | CG17257-PA | 1..420 | 1..420 | 2230 | 100 | Plus |
GABPI-PB | 420 | CG17257-PB | 1..420 | 1..420 | 2230 | 100 | Plus |
GABPI-PD | 343 | CG17257-PD | 1..343 | 78..420 | 1809 | 100 | Plus |
GABPI-PC | 343 | CG17257-PC | 1..343 | 78..420 | 1809 | 100 | Plus |
Dnz1-PA | 276 | CG6627-PA | 103..168 | 267..326 | 159 | 40.9 | Plus |