Clone Sequence Records
BS02253.5prime Sequence
875 bp (828 high quality bases) assembled on 2005-11-28
> BS02253.5prime
CAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGCTGAGCCAC
ATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGACAGCAACAA
CAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCATGCAGGCCA
TGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCTCCAACAAC
AACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCGGCTGGAGG
CTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCATCCGCTGA
GCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCAGTGGCAAG
CACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTTAAACGCAC
AGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAACTGCATCA
TAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACCAGAAGTGC
CTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGTCAACGCGG
CGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGGCAGTAGCG
GTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAGGAGGAGGC
GGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCTGATGACTTCATGAC
CAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGAGGCCGAGC
AGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCCTGCGCGTT
GGTCCCTATTCACAGTCCAGCCGGACTACAAGGGTGCCGTGTCGGCCCTG
TGCCAAGTGGTCACAAACAGCTCTT
BS02253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4380-PA | 1527 | usp-RA | 1..803 | 9..811 | 4015 | 100 | Plus |
| CG4380-PA | 1527 | usp-RA | 804..856 | 811..863 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 3038 | CG4380-RB | 923..1791 | 9..875 | 4295 | 99.8 | Plus |
| usp-RA | 2515 | CG4380-RA | 400..1268 | 9..875 | 4295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2040045..2040913 | 875..9 | 4245 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-13 09:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 399..441 | 172..216 | 112 | 75.6 | Plus |
BS02253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:24 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-PA | 1..869 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:37 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4380-PA | 1..869 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:25 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1268 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:59:01 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1268 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:59:01 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2040045..2040917 | 1..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:25 Download gff for
BS02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1934078..1934950 | 1..875 | 99 | | Minus |
BS02253.complete Sequence
1561 bp (1561 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634666
> BS02253.complete
GAAGTTATCAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGC
TGAGCCACATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGAC
AGCAACAACAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCAT
GCAGGCCATGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCT
CCAACAACAACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCG
GCTGGAGGCTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCA
TCCGCTGAGCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCA
GTGGCAAGCACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTT
AAACGCACAGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAA
CTGCATCATAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACC
AGAAGTGCCTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGT
CAACGCGGCGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGG
CAGTAGCGGTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAG
GAGGAGGCGGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCTGATGAC
TTCATGACCAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGA
GGCCGAGCAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCC
TGCGCGTTGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTG
TCGGCCCTGTGCCAAGTGGTCAACAAACAGCTCTTCCAGATGGTCGAATA
CGCGCGCATGATGCCGCACTTTGCCCAGGTGCCGCTGGACGACCAGGTGA
TTCTGCTGAAAGCCGCTTGGATCGAGCTGCTCATTGCGAACGTGGCCTGG
TGCAGCATCGTTTCGCTGGATGACGGCGGTGCCGGCGGCGGGGGCGGTGG
ACTAGGCCACGATGGCTCCTTTGAGCGACGATCACCGGGCCTTCAGCCCC
AGCAGCTGTTCCTCAACCAGAGCTTCTCGTACCATCGCAACAGTGCGATC
AAAGCCGGTGTGTCAGCCATCTTCGACCGCATATTGTCGGAGCTGAGTGT
AAAGATGAAGCGGCTGAATCTCGACCGACGCGAGCTGTCCTGCTTGAAGG
CCATCATACTGTACAACCCGGACATACGCGGGATCAAGAGCCGGGCGGAG
ATCGAGATGTGCCGCGAGAAGGTGTACGCTTGCCTGGACGAGCACTGCCG
CCTGGAACATCCGGGCGACGATGGACGCTTTGCGCAACTGCTGCTGCGTC
TGCCCGCTTTGCGATCGATCAGCCTGAAGTGCCAGGATCACCTGTTCCTC
TTCCGCATTACCAGCGACCGGCCGCTGGAGGAGCTCTTTCTCGAGCAGCT
GGAGGCGCCGCCGCCACCCGGCCTGGCGATGAAACTGGAGTAGCGAAGCT
TTCTAGACCAT
BS02253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 1527 | CG4380-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| usp-RA | 1527 | CG4380-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 3038 | CG4380-RB | 923..2449 | 17..1543 | 7635 | 100 | Plus |
| usp-RA | 2515 | CG4380-RA | 400..1926 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2039387..2040913 | 1543..17 | 7635 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 399..441 | 180..224 | 112 | 75.6 | Plus |
BS02253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:20 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 1..1527 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:02 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 367..1897 | 9..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:55 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 400..1927 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:21 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 367..1897 | 9..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:12 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 400..1927 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:12 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2039385..2040913 | 17..1545 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:55 Download gff for
BS02253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1933418..1934946 | 17..1545 | 99 | | Minus |
BS02253.pep Sequence
Translation from 16 to 1542
> BS02253.pep
MDNCDQDASFRLSHIKEEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSM
VHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGS
KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK
RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPG
SVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRA
ETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMP
HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG
SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRL
NLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG
DDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPPP
PGLAMKLE*
BS02253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-PB | 508 | CG4380-PB | 1..508 | 1..508 | 2666 | 100 | Plus |
| usp-PA | 508 | CG4380-PA | 1..508 | 1..508 | 2666 | 100 | Plus |
| Hnf4-PF | 666 | CG9310-PF | 59..429 | 56..495 | 468 | 28.8 | Plus |
| Hnf4-PE | 704 | CG9310-PE | 97..467 | 56..495 | 468 | 28.8 | Plus |
| Hnf4-PA | 704 | CG9310-PA | 97..467 | 56..495 | 468 | 28.8 | Plus |
