BS02287.complete Sequence
2020 bp assembled on 2010-05-10
GenBank Submission: KX797201
> BS02287.complete
GAAGTTATCAGTCGACATGGGCGGCCCAACGGCGCCGGTAGCCAGCAGTG
GCGAGGTGGGACAGACGTACTGCCTCCGCTGGAACAACCACCAGACCAAT
CTGGTACAGATTCTACACGCCCTGCACGAGGTGGGCAGCTATGTGGACTG
CAGCCTGGTGGTGGACGATGAACAGTTCCAGGCCCATCGCGTGGTTCTGG
CGGCCAATTCACCGTATTTCCAGCACATCCTGAAGGATGTGCCGCAGGAC
CACTGCAGCATCATACTGCCGGGAGTGAAGGGCTTCGAGATTGCCGCTTT
GCTGCAGTACATGTACACGGGCGAGACGACGGTGACCAAGAGCCAGGAGC
CGGAGATTCTGCGCACAGCCAAGGAGCTTCAGGTCAAGGGTCTGTACGAC
AACTTGATGAAGTTCAATCATGCCAGCGTCACGCCCACCTCCAGTTCGGG
AGCTGGCGGAGCCAAGCCCCAGAACGGATCAGCATCCAACCACTCCTCAT
CCGTGATCTCCACATCCACGCACATCTCGCCCAGTGCCGCCATCTCGAGC
AGCTGCTCGCCACCACCGCCGCCGCAGTTTGGCTATCAGCCGGGCTACAG
CCATTATCCTCAGCAGCAGCCGATGTCGGCTAGTCAGATTCCGGCCGGTG
AGGCTCCACTGACCCCCACCCAGGCCACACCCCACTCGGCGGCCTCGGGA
GCGGGAGAAGCCGGTGGACAGTGGCCACTGACACCCTCCGCCGCCGCCGC
CATGTTGAACTCTGTCTACGAATCAGCCGCCGATATGAATCCTCTCAAGC
GCAAGAAGCTGTCGGCCATTTCAAGCATGCTTCTGAGTGGAAACCGCGAC
ACACCCATCCTGAGAAACGTTCTGGCCCAAGCTAATCCCGCTGACTCCTC
GCAACCCGGACCAATGAATGCCAATGGAGAGAAGACGCCCACTCATCCCC
ACCAGAACACCCAGCTTCCTGCCGGATTGGGAGTAAGTGGAGGCGAGCGC
AACCACAGCTTCAATGGCTCCGACTACGGCGGCGACAAGGAACCACTTTC
GCCCTACACAGATCGTTCCTTTGAAGAGGAGACCGGTCAGTCTGGCGGCA
AGAAGCCGGAATGGAAGCGATACAAGCAGTATACCAGAGCGGATATGATG
TGCGCCATCCAAGCGGTGAGGGAGGGAATGAGTGCCCTGCAGGCGAGCAG
GAAGTACGGCCTGCCCAGTCGCACTCTCTACGACAAAGTCCGTAAGCTGA
ACATCACCACAGGACGTGGCACACACCGCACACCCAAGCGCAGCCCGCCG
GGAGCTGAGTCCTCACAAGGTTTCTCCTATTCCGCTGCGGCAGCCGCTGC
TGCACACAACTACGGTCATGGACATGGCCATCACTCGGAGGTGAAGCGTG
ATCAGAAGGTGGACCATGTGCCCGCCCATCACGGCATGCCGCCCACCATT
CCACCCTCAGCTGCGGCCCTTCTGGATCACGCTTTCCTTCAGCAGGCTCT
GGAGAACCGTGGTGGTGACATGGCCGGCCGAGAGGCTCTCCATGCCATGG
CTCTGGCCGCAGCGGCCCATGCCGCTGCCAATCGCCTTTCCAGCAGTCCA
GCGGAGATGGACCAGCGCTCCAATGGCCATGGCATGCGGTCGCCAAGTCC
GCAAGGTCGTCACTACCCGCACGAGCAGGAGGCCATGGACTTGGAGATGG
AGAAGCACGAGCAAAATATTATCAAGAGGGAACGCGACCAGGACGAACGT
GAAGATGCGGACGATGAGGAGGATCATGAGCAAGAGCACGTGGAGGATCT
CTCGCTGGCTAGAAAGGAGCGGCCACCATCGCCCTACTCGCCCCAGCCAA
CCGAGGCTGGTGCCGGCGTGATTATGCACGCCAGCAGTGCGTCCGCCAAT
GGCAAGGATCACGTGGACTACCCATCCTCGCCGCAGTTCGTTCCCATTGG
TCTGAAGAGGGAGCTGATGGAAGGCGAGGACGCTCAGGCCCGGGCCGACT
GACGAAGCTTTCTAGACCAT
BS02287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 2043 | CG7230-PC | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| rib-RB | 1986 | CG7230-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| rib-RA | 1986 | CG7230-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 3956 | CG7230-RC | 689..2674 | 17..2002 | 9930 | 100 | Plus |
| rib-RB | 4244 | CG7230-RB | 977..2962 | 17..2002 | 9930 | 100 | Plus |
| rib-RA | 3956 | CG7230-RA | 689..2674 | 17..2002 | 9930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19278129..19280114 | 17..2002 | 9930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:55:55 has no hits.
BS02287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:35 Download gff for
BS02287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 695..2680 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:13 Download gff for
BS02287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 689..2674 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:43 Download gff for
BS02287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 689..2674 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:43 Download gff for
BS02287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19278129..19280114 | 17..2004 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:13 Download gff for
BS02287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15165634..15167619 | 17..2004 | 99 | | Plus |
BS02287.pep Sequence
Translation from 16 to 2001
> BS02287.pep
MGGPTAPVASSGEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVD
DEQFQAHRVVLAANSPYFQHILKDVPQDHCSIILPGVKGFEIAALLQYMY
TGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHASVTPTSSSGAGGAK
PQNGSASNHSSSVISTSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQ
QPMSASQIPAGEAPLTPTQATPHSAASGAGEAGGQWPLTPSAAAAMLNSV
YESAADMNPLKRKKLSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPM
NANGEKTPTHPHQNTQLPAGLGVSGGERNHSFNGSDYGGDKEPLSPYTDR
SFEEETGQSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLP
SRTLYDKVRKLNITTGRGTHRTPKRSPPGAESSQGFSYSAAAAAAAHNYG
HGHGHHSEVKRDQKVDHVPAHHGMPPTIPPSAAALLDHAFLQQALENRGG
DMAGREALHAMALAAAAHAAANRLSSSPAEMDQRSNGHGMRSPSPQGRHY
PHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHEQEHVEDLSLARK
ERPPSPYSPQPTEAGAGVIMHASSASANGKDHVDYPSSPQFVPIGLKREL
MEGEDAQARAD*
BS02287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-PC | 680 | CG7230-PC | 1..661 | 1..661 | 3484 | 100 | Plus |
| rib-PB | 661 | CG7230-PB | 1..661 | 1..661 | 3484 | 100 | Plus |
| rib-PA | 661 | CG7230-PA | 1..661 | 1..661 | 3484 | 100 | Plus |
| ab-PE | 899 | CG43860-PE | 76..367 | 16..303 | 289 | 29.3 | Plus |
| ab-PA | 904 | CG43860-PA | 76..367 | 16..303 | 289 | 29.3 | Plus |
