BS02470.complete Sequence
1042 bp assembled on 2010-07-02
GenBank Submission: KX795214
> BS02470.complete
GAAGTTATCAGTCGACATGTCGCTGGGTGCCATGCATTGTACGCGATGTG
CCGACGGCTTCGAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTC
TGGCACACCCAGTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGA
TGGGATATTCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTC
ACGTGCTCTTCGCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGA
CGGGTCATCAAGGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTG
CCAATTGTGCGCCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGA
ACCGCGCCTTGTGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACC
GGCCGCTATGTATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTT
GCGATTCCGGGGCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCT
GCGGCACAGAGTTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGA
TTGGCTGCTAACGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAA
AATGGGCATTCCCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGG
TGGTAACGGCGCTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCC
AAGTGCGAGAAACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATT
GGCCTACTGCGAGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCG
TCTGCAACCAGGTTATTGGAGGCGATGTTTTCACTGCCTTGAACAAGGCC
TGGTGTGTGCACCACTTTGCGTGCTCCGTGTGCGACACGAAGATGACACA
AAAATCGAAATTCTACGAGTACGACGAGAAGCCGGTGTGCAAAAAGTGCT
ATGACCGATTTCCAAACGAACTCAGACGACGTCTGCGCACCGCCCACGAG
ATGACAATGAAAAAGAACACCTAACGAAGCTTTCTAGACCAT
BS02470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1047 | CG7954-PC | 38..1047 | 15..1024 | 5050 | 100 | Plus |
| stck-RB | 1038 | CG7954-PB | 29..1038 | 15..1024 | 5050 | 100 | Plus |
| stck-RD | 1008 | CG7954-PD | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RD | 1500 | CG7954-RD | 253..1262 | 15..1024 | 5050 | 100 | Plus |
| stck-RC | 1335 | CG7954-RC | 92..1101 | 15..1024 | 5050 | 100 | Plus |
| stck-RB | 1388 | CG7954-RB | 141..1150 | 15..1024 | 5050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 121..426 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 568..827 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359726 | 827..1024 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 427..568 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358485..8358590 | 15..120 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:24:08 has no hits.
BS02470.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:51 Download gff for
BS02470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 86..1095 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:29 Download gff for
BS02470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 143..1152 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:29 Download gff for
BS02470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 143..1152 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:29 Download gff for
BS02470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8359530..8359728 | 828..1026 | 99 | | Plus |
| 3R | 8358487..8358590 | 17..120 | 100 | -> | Plus |
| 3R | 8358649..8358954 | 121..426 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 427..568 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 569..827 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:29 Download gff for
BS02470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184929..4185187 | 569..827 | 100 | -> | Plus |
| arm_3R | 4184209..4184312 | 17..120 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 121..426 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 427..568 | 100 | -> | Plus |
| arm_3R | 4185252..4185450 | 828..1026 | 99 | | Plus |
BS02470.pep Sequence
Translation from 16 to 1023
> BS02470.pep
MSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYE
FEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAK
ELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCHGLIDEEPLRFRGE
VYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPI
CGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCET
HYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFY
EYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNT*
BS02470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-PD | 335 | CG7954-PD | 1..335 | 1..335 | 1920 | 100 | Plus |
| stck-PA | 335 | CG7954-PA | 1..335 | 1..335 | 1920 | 100 | Plus |
| stck-PB | 345 | CG7954-PB | 11..345 | 1..335 | 1920 | 100 | Plus |
| stck-PC | 348 | CG7954-PC | 14..348 | 1..335 | 1920 | 100 | Plus |
| Pax-PB | 556 | CG31794-PB | 322..553 | 68..314 | 400 | 32.7 | Plus |
