Clone BS02472 Report

Search the DGRC for BS02472

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:24
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptjigr1-RC
Protein status:BS02472.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02472.5prime Sequence

903 bp (827 high quality bases) assembled on 2005-11-28

> BS02472.5prime
CAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGTTGCCAAAG
GGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGTTTGATCT
GGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGATAGGTCAA
ACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGAACAGATA
GCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGATGACCAC
GTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAATGGCCTTT
CCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTTTCTGGGG
GATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTAAAGGAGGA
GGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAGCAACGGGC
ATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGATCTTCGAT
TGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCCCTGAATAA
CTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGAAATGCCCA
ATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGACGACACCAA
AACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCCATGAGGAG
CAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAAACGCCGAG
TCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAACCTCTAGCC
CCCTTGCCACCGGCGTACGCCAAATTCCGGGGGATTTGGCGAGTTCATGT
GCCACTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTTGGTGCAA
AAG

BS02472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17383-PA 1011 CG17383-RA 1..824 9..832 4120 100 Plus
CG17383-PB 1011 CG17383-RB 1..824 9..832 4120 100 Plus
CG17383-PD 1011 CG17383-RD 1..824 9..832 4120 100 Plus
CG17383-PC 1011 CG17383-RC 1..824 9..832 4120 100 Plus
CG17383-PA 1011 CG17383-RA 821..890 830..899 350 100 Plus
CG17383-PB 1011 CG17383-RB 821..890 830..899 350 100 Plus
CG17383-PD 1011 CG17383-RD 821..890 830..899 350 100 Plus
CG17383-PC 1011 CG17383-RC 821..890 830..899 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RG 1607 CG17383-RG 394..1287 9..903 4435 99.8 Plus
jigr1-RF 1635 CG17383-RF 422..1315 9..903 4435 99.8 Plus
jigr1-RE 1782 CG17383-RE 422..1315 9..903 4435 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25649563..25649930 535..903 1780 99.5 Plus
3R 32079331 3R 25649184..25649498 222..536 1575 100 Plus
3R 32079331 3R 25648899..25649112 9..222 1070 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:06:01 has no hits.

BS02472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:25 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17383-PD 1..894 9..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:38 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17383-PD 1..894 9..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:16 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 417..1315 1..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:55 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 417..1315 1..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:55 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25648894..25649112 1..222 98 -> Plus
3R 25649185..25649497 223..535 100 -> Plus
3R 25649564..25649930 536..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:16 Download gff for BS02472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21474616..21474834 1..222 98 -> Plus
arm_3R 21474907..21475219 223..535 100 -> Plus
arm_3R 21475286..21475652 536..903 99   Plus

BS02472.complete Sequence

1045 bp (1045 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634667

> BS02472.complete
GAAGTTATCAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGT
TGCCAAAGGGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAG
TTTGATCTGGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGA
TAGGTCAAACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGG
AACAGATAGCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGG
ATGACCACGTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAA
TGGCCTTTCCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGT
TTCTGGGGGATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTA
AAGGAGGAGGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAG
CAACGGGCATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGA
TCTTCGATTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCC
CTGAATAACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGA
AATGCCCAATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGAC
GACACCAAAACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCC
ATGAGGAGCAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAA
ACGCCGAGTCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAAC
CTCTAGCCCCCTTGCCACCGGCGTACGCCAAATTCCGGGGATTTGGCGAG
TTCATGTGCCACTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTT
GGTGCAGAAGTTCACCCGCGAATTGGTCCAGTCCTCGCTTCGCAACGAGG
ACAGCGGCAGCAAAGAAAAGACGGATGAGGTCGATCCGGTAGATCAGAGC
AGCGAGTCGCAGGAGGAGGACGAGTAGCGAAGCTTTCTAGACCAT

BS02472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RG 1011 CG17383-PG 1..1011 17..1027 5055 100 Plus
jigr1-RF 1011 CG17383-PF 1..1011 17..1027 5055 100 Plus
jigr1-RE 1011 CG17383-PE 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RG 1607 CG17383-RG 394..1404 17..1027 5055 100 Plus
jigr1-RF 1635 CG17383-RF 422..1432 17..1027 5055 100 Plus
jigr1-RE 1782 CG17383-RE 422..1432 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25649563..25650047 543..1027 2425 100 Plus
3R 32079331 3R 25649184..25649498 230..544 1575 100 Plus
3R 32079331 3R 25648899..25649112 17..230 1070 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:49:03 has no hits.

BS02472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:53 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:19 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 372..1386 10..1027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:54 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 422..1432 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:53 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 372..1386 10..1027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:46 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 422..1432 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:46 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25648899..25649112 17..230 100 -> Plus
3R 25649185..25649497 231..543 100 -> Plus
3R 25649564..25650047 544..1029 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:54 Download gff for BS02472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21474621..21474834 17..230 100 -> Plus
arm_3R 21474907..21475219 231..543 100 -> Plus
arm_3R 21475286..21475769 544..1029 99   Plus

BS02472.pep Sequence

Translation from 16 to 1026

> BS02472.pep
MENLSHLYPPQLPKGRGRPRATYAQTGEFDLGLIREYRSHPVLYDRSNKR
FKDKLYVAHIWEQIAHKLGYDATSIRERMTTLRNRYNIEKRRVENGLSTQ
SSQWPLFESLQFLGDHIRPRRSFKNMSVKEEDEETYEVDDCRSDSNGHMN
SIKDELEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRSTNGEMPNGK
GYNHFAESYHRRHQNQPEYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDD
SLSISGYYPTQPLAPLPPAYAKFRGFGEFMCHSLCDMPAATALRLVQKFT
RELVQSSLRNEDSGSKEKTDEVDPVDQSSESQEEDE*

BS02472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-PG 336 CG17383-PG 1..336 1..336 1784 100 Plus
jigr1-PF 336 CG17383-PF 1..336 1..336 1784 100 Plus
jigr1-PE 336 CG17383-PE 1..336 1..336 1784 100 Plus
jigr1-PC 336 CG17383-PC 1..336 1..336 1784 100 Plus
jigr1-PD 336 CG17383-PD 1..336 1..336 1784 100 Plus