Clone Sequence Records
BS02472.5prime Sequence
903 bp (827 high quality bases) assembled on 2005-11-28
> BS02472.5prime
CAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGTTGCCAAAG
GGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGTTTGATCT
GGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGATAGGTCAA
ACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGAACAGATA
GCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGATGACCAC
GTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAATGGCCTTT
CCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTTTCTGGGG
GATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTAAAGGAGGA
GGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAGCAACGGGC
ATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGATCTTCGAT
TGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCCCTGAATAA
CTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGAAATGCCCA
ATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGACGACACCAA
AACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCCATGAGGAG
CAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAAACGCCGAG
TCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAACCTCTAGCC
CCCTTGCCACCGGCGTACGCCAAATTCCGGGGGATTTGGCGAGTTCATGT
GCCACTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTTGGTGCAA
AAG
BS02472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17383-PA | 1011 | CG17383-RA | 1..824 | 9..832 | 4120 | 100 | Plus |
CG17383-PB | 1011 | CG17383-RB | 1..824 | 9..832 | 4120 | 100 | Plus |
CG17383-PD | 1011 | CG17383-RD | 1..824 | 9..832 | 4120 | 100 | Plus |
CG17383-PC | 1011 | CG17383-RC | 1..824 | 9..832 | 4120 | 100 | Plus |
CG17383-PA | 1011 | CG17383-RA | 821..890 | 830..899 | 350 | 100 | Plus |
CG17383-PB | 1011 | CG17383-RB | 821..890 | 830..899 | 350 | 100 | Plus |
CG17383-PD | 1011 | CG17383-RD | 821..890 | 830..899 | 350 | 100 | Plus |
CG17383-PC | 1011 | CG17383-RC | 821..890 | 830..899 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-RG | 1607 | CG17383-RG | 394..1287 | 9..903 | 4435 | 99.8 | Plus |
jigr1-RF | 1635 | CG17383-RF | 422..1315 | 9..903 | 4435 | 99.8 | Plus |
jigr1-RE | 1782 | CG17383-RE | 422..1315 | 9..903 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25649563..25649930 | 535..903 | 1780 | 99.5 | Plus |
3R | 32079331 | 3R | 25649184..25649498 | 222..536 | 1575 | 100 | Plus |
3R | 32079331 | 3R | 25648899..25649112 | 9..222 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:06:01 has no hits.
BS02472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:25 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17383-PD | 1..894 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:38 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17383-PD | 1..894 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:16 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 417..1315 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:55 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 417..1315 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:55 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25648894..25649112 | 1..222 | 98 | -> | Plus |
3R | 25649185..25649497 | 223..535 | 100 | -> | Plus |
3R | 25649564..25649930 | 536..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:16 Download gff for
BS02472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21474616..21474834 | 1..222 | 98 | -> | Plus |
arm_3R | 21474907..21475219 | 223..535 | 100 | -> | Plus |
arm_3R | 21475286..21475652 | 536..903 | 99 | | Plus |
BS02472.complete Sequence
1045 bp (1045 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634667
> BS02472.complete
GAAGTTATCAGTCGACATGGAGAACCTGTCGCACTTGTATCCACCGCAGT
TGCCAAAGGGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAG
TTTGATCTGGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGA
TAGGTCAAACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGG
AACAGATAGCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGG
ATGACCACGTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAA
TGGCCTTTCCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGT
TTCTGGGGGATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTA
AAGGAGGAGGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAG
CAACGGGCATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGA
TCTTCGATTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCC
CTGAATAACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGA
AATGCCCAATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGAC
GACACCAAAACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCC
ATGAGGAGCAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAA
ACGCCGAGTCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAAC
CTCTAGCCCCCTTGCCACCGGCGTACGCCAAATTCCGGGGATTTGGCGAG
TTCATGTGCCACTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTT
GGTGCAGAAGTTCACCCGCGAATTGGTCCAGTCCTCGCTTCGCAACGAGG
ACAGCGGCAGCAAAGAAAAGACGGATGAGGTCGATCCGGTAGATCAGAGC
AGCGAGTCGCAGGAGGAGGACGAGTAGCGAAGCTTTCTAGACCAT
BS02472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-RG | 1011 | CG17383-PG | 1..1011 | 17..1027 | 5055 | 100 | Plus |
jigr1-RF | 1011 | CG17383-PF | 1..1011 | 17..1027 | 5055 | 100 | Plus |
jigr1-RE | 1011 | CG17383-PE | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-RG | 1607 | CG17383-RG | 394..1404 | 17..1027 | 5055 | 100 | Plus |
jigr1-RF | 1635 | CG17383-RF | 422..1432 | 17..1027 | 5055 | 100 | Plus |
jigr1-RE | 1782 | CG17383-RE | 422..1432 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25649563..25650047 | 543..1027 | 2425 | 100 | Plus |
3R | 32079331 | 3R | 25649184..25649498 | 230..544 | 1575 | 100 | Plus |
3R | 32079331 | 3R | 25648899..25649112 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:49:03 has no hits.
BS02472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:53 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RD | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:19 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RD | 372..1386 | 10..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:54 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 422..1432 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:53 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RD | 372..1386 | 10..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:46 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jigr1-RE | 422..1432 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:46 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25648899..25649112 | 17..230 | 100 | -> | Plus |
3R | 25649185..25649497 | 231..543 | 100 | -> | Plus |
3R | 25649564..25650047 | 544..1029 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:54 Download gff for
BS02472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21474621..21474834 | 17..230 | 100 | -> | Plus |
arm_3R | 21474907..21475219 | 231..543 | 100 | -> | Plus |
arm_3R | 21475286..21475769 | 544..1029 | 99 | | Plus |
BS02472.pep Sequence
Translation from 16 to 1026
> BS02472.pep
MENLSHLYPPQLPKGRGRPRATYAQTGEFDLGLIREYRSHPVLYDRSNKR
FKDKLYVAHIWEQIAHKLGYDATSIRERMTTLRNRYNIEKRRVENGLSTQ
SSQWPLFESLQFLGDHIRPRRSFKNMSVKEEDEETYEVDDCRSDSNGHMN
SIKDELEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRSTNGEMPNGK
GYNHFAESYHRRHQNQPEYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDD
SLSISGYYPTQPLAPLPPAYAKFRGFGEFMCHSLCDMPAATALRLVQKFT
RELVQSSLRNEDSGSKEKTDEVDPVDQSSESQEEDE*
BS02472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jigr1-PG | 336 | CG17383-PG | 1..336 | 1..336 | 1784 | 100 | Plus |
jigr1-PF | 336 | CG17383-PF | 1..336 | 1..336 | 1784 | 100 | Plus |
jigr1-PE | 336 | CG17383-PE | 1..336 | 1..336 | 1784 | 100 | Plus |
jigr1-PC | 336 | CG17383-PC | 1..336 | 1..336 | 1784 | 100 | Plus |
jigr1-PD | 336 | CG17383-PD | 1..336 | 1..336 | 1784 | 100 | Plus |