Clone Sequence Records
BS02516.5prime Sequence
895 bp (833 high quality bases) assembled on 2005-11-28
> BS02516.5prime
CAGTCGACATGACCACAATCGCGGATTTATTCACAAAGTATAATTGCACA
AATTGCCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCGGAGTGCGA
AAACTTCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGAGATCGGCG
CCCATCAAAACAACCACTCCTACCAGTTCATGGACACCGGCACTTCCATA
TTGAGTGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAGGAAATCCG
CCTGTTGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGAGGACATTA
GCAAGCACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGGAGTACGTG
AATAAGTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACGCCGGCCCA
GAGCCAGAGACCCCGCCTTATCGATCACACTGGAGACGACGACGCTGGTC
CTCTGGGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAATCAACTCC
GATGAGGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGCTTTGAGCG
GGAGTACGATCCCACGGCAGAGCAACTGATCTCGAACATCTCATTAAGCT
CCGAGGATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACGTTGACATA
TACACCCGCCGACTCAGAGAGCGTGCTCGCAGGAAACGGATGGTCAGGGA
CTATCAATTAGTATCAAATTTCTTCCGAAACAGAAATTACGCTCAGCAAC
AAGGACTCACCAAGGAGCAGCGCGAGTTTCGGGACAGATTTCGGGTCTAC
GCCCAGTTCTACACGTGTAACGAGTATGAGCGGCTATTGGGATCACTGGA
GCGCGAAAAGAACTGCGCATTCGACAGTCAGAGCTGTACCGATAC
BS02516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9638-PA | 1257 | Ada2b-RA | 1..852 | 9..860 | 4260 | 100 | Plus |
| CG9638-PB | 1668 | Ada2b-RB | 1..852 | 9..860 | 4260 | 100 | Plus |
| CG9638-PA | 1257 | Ada2b-RA | 853..888 | 860..895 | 180 | 100 | Plus |
| CG9638-PB | 1668 | Ada2b-RB | 853..888 | 860..895 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..980 | 9..895 | 4415 | 99.9 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..980 | 9..895 | 4415 | 99.9 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..980 | 9..895 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238833..8239610 | 895..119 | 3825 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:34:46 has no hits.
BS02516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:26 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9638-PB | 1..888 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:40 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9638-PB | 1..888 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:23:01 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..980 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:13:51 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..980 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:13:51 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8238833..8239606 | 123..895 | 99 | <- | Minus |
| 3R | 8240310..8240423 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:23:01 Download gff for
BS02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4064555..4065328 | 123..895 | 99 | <- | Minus |
| arm_3R | 4066032..4066145 | 9..122 | 100 | | Minus |
BS02516.complete Sequence
1291 bp (1291 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634668
> BS02516.complete
GAAGTTATCAGTCGACATGACCACAATCGCGGATTTATTCACAAAGTATA
ATTGCACAAATTGCCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCG
GAGTGCGAAAACTTCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGA
GATCGGCGCCCATCAAAACAACCACTCCTACCAGTTCATGGACACCGGCA
CTTCCATATTGAGTGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAG
GAAATCCGCCTGTTGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGA
GGACATTAGCAAGCACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGG
AGTACGTGAATAAGTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACG
CCGGCCCAGAGCCAGAGACCCCGCCTTATCGATCACACTGGAGACGACGA
CGCTGGTCCTCTGGGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAA
TCAACTCCGATGAGGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGC
TTTGAGCGGGAGTACGATCCCACGGCAGAGCAACTGATCTCGAACATCTC
ATTAAGCTCCGAGGATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACG
TTGACATATACACCCGCCGACTCAGAGAGCGTGCTCGCAGGAAACGGATG
GTCAGGGACTATCAATTAGTATCAAATTTCTTCCGAAACAGAAATTACGC
TCAGCAACAAGGACTCACCAAGGAGCAGCGCGAGTTTCGGGACAGATTTC
GGGTCTACGCCCAGTTCTACACGTGTAACGAGTATGAGCGGCTATTGGGA
TCACTGGAGCGCGAAAAGGAACTGCGCATTCGACAGTCAGAGCTGTACCG
ATACCGGTATAATGGCCTGACCAAAATCGCGGAATGCACACATTTCGAGC
AGCACGCCGCAACAGCGACGCACCGCTCTACAGGACCATATGGCCATGGC
AAGACCCTCCACTGCATAATAAACGCGCCAAACAACGAGCGTTCGAATGG
TTCTATAAGACAATGTTTAACCACAGGACCACACGCATACCTCCAATGGA
AGTCATCGGCCGCCAAGCTCTTCCTTGCACTCCCCACAACCGAATCTCAG
AAAGGTCGAAATGTCAAGCGGCGGCGAGGCAAGTTCAAATTCAATCGCAC
CAAGAAACACGCTCCACATCGCCGACCCGACCTGCTCCGGCGCATTATTG
CCCAGCAAAAACTACTTGGATAGCGAAGCTTTCTAGACCAT
BS02516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 1257 | CG9638-PC | 1..1257 | 17..1273 | 6285 | 100 | Plus |
| Ada2b-RA | 1257 | CG9638-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
| Ada2b-RB | 1668 | CG9638-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..1350 | 17..1274 | 6290 | 100 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..1350 | 17..1274 | 6290 | 100 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..1082 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238731..8239610 | 1006..127 | 4385 | 99.9 | Minus |
| 3R | 32079331 | 3R | 8238103..8238252 | 1156..1007 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 8237918..8238035 | 1274..1157 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:10:48 has no hits.
BS02516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:23 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:04 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1347 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:33 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1350 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:23 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1347 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:37 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1350 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:37 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8237916..8238035 | 1157..1275 | 99 | <- | Minus |
| 3R | 8238103..8238252 | 1007..1156 | 100 | <- | Minus |
| 3R | 8238731..8239606 | 131..1006 | 100 | <- | Minus |
| 3R | 8240310..8240423 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:33 Download gff for
BS02516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4063638..4063757 | 1157..1275 | 99 | <- | Minus |
| arm_3R | 4063825..4063974 | 1007..1156 | 100 | <- | Minus |
| arm_3R | 4064453..4065328 | 131..1006 | 100 | <- | Minus |
| arm_3R | 4066032..4066145 | 17..130 | 100 | | Minus |
BS02516.pep Sequence
Translation from 16 to 1272
> BS02516.pep
MTTIADLFTKYNCTNCQDDIQGIRVHCAECENFDLCLQCFAAGAEIGAHQ
NNHSYQFMDTGTSILSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKH
IETKSAEDAKEEYVNKFVNGTIGRATWTPAQSQRPRLIDHTGDDDAGPLG
TNALSTLPPLEINSDEAMQLGYMPNRDSFEREYDPTAEQLISNISLSSED
TEVDVMLKLAHVDIYTRRLRERARRKRMVRDYQLVSNFFRNRNYAQQQGL
TKEQREFRDRFRVYAQFYTCNEYERLLGSLEREKELRIRQSELYRYRYNG
LTKIAECTHFEQHAATATHRSTGPYGHGKTLHCIINAPNNERSNGSIRQC
LTTGPHAYLQWKSSAAKLFLALPTTESQKGRNVKRRRGKFKFNRTKKHAP
HRRPDLLRRIIAQQKLLG*
BS02516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-PC | 418 | CG9638-PC | 1..418 | 1..418 | 2220 | 100 | Plus |
| Ada2b-PA | 418 | CG9638-PA | 1..418 | 1..418 | 2220 | 100 | Plus |
| Ada2b-PB | 555 | CG9638-PB | 1..341 | 1..348 | 1762 | 96.6 | Plus |
| Ada2a-PG | 527 | CG43663-PG | 81..379 | 13..305 | 245 | 26.3 | Plus |
| Ada2a-PC | 527 | CG43663-PC | 81..379 | 13..305 | 245 | 26.3 | Plus |
