Clone Sequence Records
BS02535.5prime Sequence
880 bp (856 high quality bases) assembled on 2005-11-28
> BS02535.5prime
CAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTTGTATGGAC
GAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGATCCTGTGCT
CGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTGTACCGAAC
GTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCGTTTCCTGC
GTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGCGAGCAGAG
CTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCCGGAAAACC
AAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAATAAACCAG
AAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAAATGACAAA
AACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACTCCAAGCGA
AGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCACCCTGCAT
CCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATGATCCCAAA
GGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGGCTACTACA
ACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGTTAAGGACC
CACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGCACTTATAT
GCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAG
CGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAGATCACCTT
AAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCCTGCAGCCA
GTGCTCAGCGGTATTTATCGAACACGTTCA
BS02535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-PA | 1305 | CG2678-RA | 1..872 | 9..880 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RB | 2003 | CG2678-RB | 234..1105 | 9..880 | 4360 | 100 | Plus |
CG2678-RA | 1811 | CG2678-RA | 234..1105 | 9..880 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7914084..7914637 | 9..562 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 7914790..7915109 | 561..880 | 1600 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 04:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 7063..7127 | 376..440 | 109 | 63.1 | Plus |
BS02535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:27 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 1..871 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:41 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 1..871 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:18 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1104 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:56 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1104 | 9..879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:56 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7914084..7914637 | 9..562 | 100 | -> | Plus |
3R | 7914792..7915108 | 563..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:18 Download gff for
BS02535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3739806..3740359 | 9..562 | 100 | -> | Plus |
arm_3R | 3740514..3740830 | 563..879 | 100 | | Plus |
BS02535.complete Sequence
1339 bp (1339 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634671
> BS02535.complete
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCTTAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCA
TCGCAGAGAGCACAAACAAAGGCCGGGCTCTTCAAAATCGGAGTCCACGA
AGGATCCTGACTCGGACGACAGCGATCAAGCGCAGGATCTAAAACCAAAG
TGGACTAAGAACACCTTCAATGGCACGTGCAGCATTCCACCTATGCTAAA
GCCGAAACCGATATGCGATATTTGCCAAAAGAAGTTCAGTAGTGTCTACG
CCTTGAAGCGGCATATGCTTACTCACAATCGCCAACATCATCTTAAAAAA
TGTACCTATTGTTCCGAGGAGTTCAAAACAGAAAAACATCTCAAAAGGCA
CGAGCGTGGTCACATGGGAGATCTGTTTCGTTGCGAATTTTGCTCATTGG
TATTTGTAGATGTTAACTACTTGCGAAAGCACAAAAAACGCATTCACAGC
AACAACGTAATAGCGATGTAGCGAAGCTTTCTAGACCAT
BS02535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RA | 1305 | CG2678-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
CG2678-RB | 1041 | CG2678-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RA | 1811 | CG2678-RA | 234..1538 | 17..1321 | 6525 | 100 | Plus |
CG2678-RB | 2003 | CG2678-RB | 234..1271 | 17..1054 | 5190 | 100 | Plus |
CG2678-RB | 2003 | CG2678-RB | 1366..1633 | 1054..1321 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7914084..7914637 | 17..570 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 7914790..7915275 | 569..1054 | 2430 | 100 | Plus |
3R | 32079331 | 3R | 7915913..7916180 | 1054..1321 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:56:17 has no hits.
BS02535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:11 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 1..1305 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:47 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 228..1534 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:33 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1539 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:11 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 228..1534 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:35 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1539 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:35 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7914084..7914637 | 17..570 | 100 | -> | Plus |
3R | 7914792..7915274 | 571..1053 | 100 | -> | Plus |
3R | 7915913..7916181 | 1054..1323 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:33 Download gff for
BS02535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3739806..3740359 | 17..570 | 100 | -> | Plus |
arm_3R | 3740514..3740996 | 571..1053 | 100 | -> | Plus |
arm_3R | 3741635..3741903 | 1054..1323 | 99 | | Plus |
BS02535.pep Sequence
Translation from 16 to 1320
> BS02535.pep
MMHSAKNVCRTCMDETGTLVDIFANVRDPVLDEPEMSLSHILARCTERPV
KRGDLLPQFICVSCVLAVQNAFRFKWQSEQSYQHFFRVLNQSGAPENQVH
LAACNGDKNQIINQKMQLKSDRQQDTQQMTKTQKPDDDLSQKQTLQAKLQ
EGNIDGPPESFTLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCP
HCSKRFCSQTQLRTHITDLCNRCPYCPRTYMQKSNLKRHLRNHLSKPAHK
CFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQLEIHRREHK
QRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPIC
DICQKKFSSVYALKRHMLTHNRQHHLKKCTYCSEEFKTEKHLKRHERGHM
GDLFRCEFCSLVFVDVNYLRKHKKRIHSNNVIAM*
BS02535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-PA | 434 | CG2678-PA | 1..434 | 1..434 | 2381 | 100 | Plus |
CG2678-PB | 346 | CG2678-PB | 1..346 | 1..346 | 1891 | 100 | Plus |
CG15436-PA | 346 | CG15436-PA | 4..340 | 8..395 | 366 | 26.6 | Plus |
Meics-PB | 571 | CG8474-PB | 21..451 | 9..428 | 343 | 24.2 | Plus |
crol-PD | 878 | CG14938-PD | 346..641 | 159..427 | 308 | 28.7 | Plus |
CG15436-PA | 346 | CG15436-PA | 126..313 | 197..423 | 276 | 27.9 | Plus |
Meics-PB | 571 | CG8474-PB | 372..567 | 197..399 | 249 | 30.9 | Plus |
CG15436-PA | 346 | CG15436-PA | 128..288 | 223..427 | 221 | 26.1 | Plus |