Clone BS02535 Report

Search the DGRC for BS02535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:25
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG2678-RA
Protein status:BS02535.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02535.5prime Sequence

880 bp (856 high quality bases) assembled on 2005-11-28

> BS02535.5prime
CAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTTGTATGGAC
GAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGATCCTGTGCT
CGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTGTACCGAAC
GTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCGTTTCCTGC
GTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGCGAGCAGAG
CTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCCGGAAAACC
AAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAATAAACCAG
AAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAAATGACAAA
AACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACTCCAAGCGA
AGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCACCCTGCAT
CCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATGATCCCAAA
GGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGGCTACTACA
ACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGTTAAGGACC
CACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGCACTTATAT
GCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAG
CGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAGATCACCTT
AAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCCTGCAGCCA
GTGCTCAGCGGTATTTATCGAACACGTTCA

BS02535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-PA 1305 CG2678-RA 1..872 9..880 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RB 2003 CG2678-RB 234..1105 9..880 4360 100 Plus
CG2678-RA 1811 CG2678-RA 234..1105 9..880 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7914084..7914637 9..562 2770 100 Plus
3R 32079331 3R 7914790..7915109 561..880 1600 100 Plus
Blast to na_te.dros performed 2015-02-04 04:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 7063..7127 376..440 109 63.1 Plus

BS02535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:27 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 1..871 9..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:41 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 1..871 9..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:18 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1104 9..879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:56 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1104 9..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:56 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7914084..7914637 9..562 100 -> Plus
3R 7914792..7915108 563..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:18 Download gff for BS02535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3739806..3740359 9..562 100 -> Plus
arm_3R 3740514..3740830 563..879 100   Plus

BS02535.complete Sequence

1339 bp (1339 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634671

> BS02535.complete
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCTTAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCA
TCGCAGAGAGCACAAACAAAGGCCGGGCTCTTCAAAATCGGAGTCCACGA
AGGATCCTGACTCGGACGACAGCGATCAAGCGCAGGATCTAAAACCAAAG
TGGACTAAGAACACCTTCAATGGCACGTGCAGCATTCCACCTATGCTAAA
GCCGAAACCGATATGCGATATTTGCCAAAAGAAGTTCAGTAGTGTCTACG
CCTTGAAGCGGCATATGCTTACTCACAATCGCCAACATCATCTTAAAAAA
TGTACCTATTGTTCCGAGGAGTTCAAAACAGAAAAACATCTCAAAAGGCA
CGAGCGTGGTCACATGGGAGATCTGTTTCGTTGCGAATTTTGCTCATTGG
TATTTGTAGATGTTAACTACTTGCGAAAGCACAAAAAACGCATTCACAGC
AACAACGTAATAGCGATGTAGCGAAGCTTTCTAGACCAT

BS02535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RA 1305 CG2678-PA 1..1305 17..1321 6525 100 Plus
CG2678-RB 1041 CG2678-PB 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RA 1811 CG2678-RA 234..1538 17..1321 6525 100 Plus
CG2678-RB 2003 CG2678-RB 234..1271 17..1054 5190 100 Plus
CG2678-RB 2003 CG2678-RB 1366..1633 1054..1321 1340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7914084..7914637 17..570 2770 100 Plus
3R 32079331 3R 7914790..7915275 569..1054 2430 100 Plus
3R 32079331 3R 7915913..7916180 1054..1321 1340 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:56:17 has no hits.

BS02535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:11 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 1..1305 17..1321 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:47 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 228..1534 17..1324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:33 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1539 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:11 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 228..1534 17..1324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:35 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1539 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:35 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7914084..7914637 17..570 100 -> Plus
3R 7914792..7915274 571..1053 100 -> Plus
3R 7915913..7916181 1054..1323 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:33 Download gff for BS02535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3739806..3740359 17..570 100 -> Plus
arm_3R 3740514..3740996 571..1053 100 -> Plus
arm_3R 3741635..3741903 1054..1323 99   Plus

BS02535.pep Sequence

Translation from 16 to 1320

> BS02535.pep
MMHSAKNVCRTCMDETGTLVDIFANVRDPVLDEPEMSLSHILARCTERPV
KRGDLLPQFICVSCVLAVQNAFRFKWQSEQSYQHFFRVLNQSGAPENQVH
LAACNGDKNQIINQKMQLKSDRQQDTQQMTKTQKPDDDLSQKQTLQAKLQ
EGNIDGPPESFTLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCP
HCSKRFCSQTQLRTHITDLCNRCPYCPRTYMQKSNLKRHLRNHLSKPAHK
CFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQLEIHRREHK
QRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPIC
DICQKKFSSVYALKRHMLTHNRQHHLKKCTYCSEEFKTEKHLKRHERGHM
GDLFRCEFCSLVFVDVNYLRKHKKRIHSNNVIAM*

BS02535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-PA 434 CG2678-PA 1..434 1..434 2381 100 Plus
CG2678-PB 346 CG2678-PB 1..346 1..346 1891 100 Plus
CG15436-PA 346 CG15436-PA 4..340 8..395 366 26.6 Plus
Meics-PB 571 CG8474-PB 21..451 9..428 343 24.2 Plus
crol-PD 878 CG14938-PD 346..641 159..427 308 28.7 Plus
CG15436-PA 346 CG15436-PA 126..313 197..423 276 27.9 Plus
Meics-PB 571 CG8474-PB 372..567 197..399 249 30.9 Plus
CG15436-PA 346 CG15436-PA 128..288 223..427 221 26.1 Plus