Clone Sequence Records
BS02541.5prime Sequence
935 bp (788 high quality bases) assembled on 2005-11-28
> BS02541.5prime
CAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAACGGGCCTC
AAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAGAAGGTTTT
GCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTCGATAACGC
CGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCGGCGAACGA
TTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAGTTCCTGAT
GGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGTCACCCGCT
ATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGGGCGGCAAG
ATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCCGATCTCAT
GGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTACGTGCAGG
ATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACCCCACCAAG
GCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAGAACACGCA
GGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGAGTATCTGA
ACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACTCCGATTCG
CTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTACGGCCTGGG
TGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGGCGGCACCT
ACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGGGCGGCAAG
GTGGTGGGAGTGCGCTCCGGCGAAGAGGTCGCCAAGTGCAAGCAGGTCTA
CTGCGATCCCAGCTACGTGCCCGAGAAGGTGCGCAAGCGTGGCAAGGTGA
TTCGCTGCATTTGCATTCTGGACCATCCGGTGGCC
BS02541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4422-PA | 1332 | Gdi-RA | 1..927 | 9..935 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdi-RC | 2501 | CG4422-RC | 262..1188 | 9..935 | 4635 | 100 | Plus |
| Gdi-RB | 2421 | CG4422-RB | 182..1108 | 9..935 | 4635 | 100 | Plus |
| Gdi-RA | 1661 | CG4422-RA | 182..1108 | 9..935 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9492625..9493104 | 881..402 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 9494220..9494615 | 404..9 | 1980 | 100 | Minus |
| 2L | 23513712 | 2L | 9492489..9492547 | 935..877 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:08:04 has no hits.
BS02541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:28 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-PA | 1..927 | 9..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:43 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4422-PA | 1..927 | 9..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:24 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1108 | 9..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:32 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1108 | 9..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:52:32 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9494222..9494615 | 9..402 | 100 | | Minus |
| 2L | 9492489..9492545 | 879..935 | 100 | <- | Minus |
| 2L | 9492628..9493103 | 403..878 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:24 Download gff for
BS02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9492489..9492545 | 879..935 | 100 | <- | Minus |
| arm_2L | 9492628..9493103 | 403..878 | 100 | <- | Minus |
| arm_2L | 9494222..9494615 | 9..402 | 100 | | Minus |
BS02541.complete Sequence
1366 bp (1366 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634672
> BS02541.complete
GAAGTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAA
CGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAG
AAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTC
GATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCG
GCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAG
TTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGT
CACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGG
GCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCC
GATCTCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTA
CGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACC
CCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAG
AACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGA
GTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACT
CCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTAC
GGCCTGGGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGG
CGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGG
GCGGCAAGGTGGTGGGAGTGCGCTCCGGCGAAGAGGTCGCCAAGTGCAAG
CAGGTCTACTGCGATCCCAGCTACGTGCCCGAGAAGGTGCGCAAGCGTGG
CAAGGTGATTCGCTGCATTTGCATTCTGGACCATCCGGTGGCCAGCACCA
AGGATGGTCTCTCCACGCAGATTATCATTCCACAAAAGCAGGTCGGCCGC
AAGTCGGACATCTATGTGTCGCTTGTGAGCTCCACTCATCAGGTGGCCGC
CAAGGGTTGGTTCGTGGGCATGGTCTCGACCACCGTTGAGACCGAGAACC
CGGAGGTGGAGATCAAGCCTGGCTTGGACTTGCTGGAGCCGATCGCACAA
AAGTTTGTAACCATTTCGGACTATTTGGAGCCGATCGATGATGGATCCGA
GTCTCAAATCTTTATTTCGGAGTCTTACGATGCGACCACGCACTTTGAGA
CTACTTGCCTGGATGTGTTGAACATATTCAAGCGGGGCACTGGCGAGACG
TTCGACTTCTCCAAGATCAAGCACGAGTTGGGTGACGAGGAGCAGTAACG
AAGCTTTCTAGACCAT
BS02541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdi-RC | 1332 | CG4422-PC | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| Gdi-RB | 1332 | CG4422-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| Gdi-RA | 1332 | CG4422-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdi-RC | 2501 | CG4422-RC | 262..1593 | 17..1348 | 6660 | 100 | Plus |
| Gdi-RB | 2421 | CG4422-RB | 182..1513 | 17..1348 | 6660 | 100 | Plus |
| Gdi-RA | 1661 | CG4422-RA | 182..1513 | 17..1348 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9492625..9493104 | 889..410 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 9492084..9492547 | 1348..885 | 2320 | 100 | Minus |
| 2L | 23513712 | 2L | 9494220..9494615 | 412..17 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:38 has no hits.
BS02541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:12 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 1..1332 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:49 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 313..1644 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:27 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1516 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:12 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 313..1644 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:54 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1516 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:54 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9492081..9492545 | 887..1350 | 99 | <- | Minus |
| 2L | 9492628..9493103 | 411..886 | 100 | <- | Minus |
| 2L | 9494222..9494615 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:27 Download gff for
BS02541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9492081..9492545 | 887..1350 | 99 | <- | Minus |
| arm_2L | 9492628..9493103 | 411..886 | 100 | <- | Minus |
| arm_2L | 9494222..9494615 | 17..410 | 100 | | Minus |
BS02541.pep Sequence
Translation from 16 to 1347
> BS02541.pep
MNEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE
ELFQRYGLEPPGERFGRGRDWNVDLIPKFLMANGQLVKLLIHTGVTRYLE
FKSIEGSYVYKGGKIAKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFR
EDDPKTWKDFDPTKANMQGLYDKFGLDKNTQDFTGHALALFRDDEYLNEP
AVNTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYML
DKPIDEIVLGEGGKVVGVRSGEEVAKCKQVYCDPSYVPEKVRKRGKVIRC
ICILDHPVASTKDGLSTQIIIPQKQVGRKSDIYVSLVSSTHQVAAKGWFV
GMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFI
SESYDATTHFETTCLDVLNIFKRGTGETFDFSKIKHELGDEEQ*
BS02541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdi-PC | 443 | CG4422-PC | 1..443 | 1..443 | 2318 | 100 | Plus |
| Gdi-PB | 443 | CG4422-PB | 1..443 | 1..443 | 2318 | 100 | Plus |
| Gdi-PA | 443 | CG4422-PA | 1..443 | 1..443 | 2318 | 100 | Plus |
| Rep-PA | 511 | CG8432-PA | 7..396 | 3..366 | 351 | 26.1 | Plus |
