Clone BS02575 Report

Search the DGRC for BS02575

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:25
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptSide-RA
Protein status:BS02575.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02575.5prime Sequence

924 bp (825 high quality bases) assembled on 2005-11-28

> BS02575.5prime
CAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAAATAAATCA
GCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGCAGCGGCAT
AAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTCGTCGCAGG
ACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCCGGCGGGCG
CGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTCGAGTCCAC
CAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCACACCAAGC
TGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTCAGCGGCAT
CGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGTTACACGGA
CTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACCGCCGCCCA
TGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGCGACTGCTG
CGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATCTGTCCCCA
TTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTGCTTCGACC
TGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGGACTACAGC
AGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAAATGGTAGC
CGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGATGAGAACA
ACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAATACAGGTG
CAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCCGTCGCTCC
AGCGAGCTGAGCTACGAGGAGGATCGCAACAAGGTGTGCGCCAATGTCCT
GGAGCAGTACAAGCAACAGCTTAA

BS02575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10446-PA 1524 Side-RA 1..842 9..850 4210 100 Plus
CG10446-PA 1524 Side-RA 842..917 849..924 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 348..1264 9..924 4560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029301..19029856 370..924 2730 99.8 Plus
2L 23513712 2L 19028800..19029112 57..369 1565 100 Plus
2L 23513712 2L 19028057..19028106 9..58 250 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:07:38 has no hits.

BS02575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:29 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-PA 1..915 9..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:44 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10446-PA 1..915 9..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:22 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1264 2..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:53 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1264 2..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:53 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19028052..19028105 2..57 92 -> Plus
2L 19028801..19029112 58..369 100 -> Plus
2L 19029301..19029856 370..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:22 Download gff for BS02575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19028052..19028105 2..57 92 -> Plus
arm_2L 19028801..19029112 58..369 100 -> Plus
arm_2L 19029301..19029856 370..924 99   Plus

BS02575.complete Sequence

1558 bp (1558 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634673

> BS02575.complete
GAAGTTATCAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAA
ATAAATCAGCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGC
AGCGGCATAAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTC
GTCGCAGGACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCC
GGCGGGCGCGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTC
GAGTCCACCAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCA
CACCAAGCTGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTC
AGCGGCATCGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGT
TACACGGACTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACC
GCCGCCCATGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGC
GACTGCTGCGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATC
TGTCCCCATTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTG
CTTCGACCTGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGG
ACTACAGCAGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAA
ATGGTAGCCGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGA
TGAGAACAACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAA
TACAGGTGCAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCC
GTCGCTCCCAGCGAGCTGAGCTACGAGGAGGATCGCAACAAGGTGTGCGC
CAATGTCCTGGAGCAGTACAAGCAACAGCTTAAGGCGCACGTGCAGCAGC
AACCAGAGTCCGCCAACGGAGTCCTGGTCCTGCCGCCCCACTATGTCCAG
CTGGCAGCGGCCCTTGGCCTTAGTGCCCAGCCGCTGGTGGATCCGATTGC
TACCCGAACGGATTTTGAGCGGTTGATAGAGTTGCAACGGGTTCAACCAC
ATTTGGCCGGCAAGTTGAGTCCCAGTTTTCCGGGAGGCTTGGAGGCTGCC
CATGTCGCTGCCGCAGCAGCGGCTTATGCCAACAGCATGGCTGTGGCCGC
TTCAGCAGGAGCCTCAGTTGCGGCAATGGCTACTTCCGGTGCCGGAACGC
CAACGGTGCACCAAGAGAGACCTGCCTCGGTGGCAGCGTCTGTCAGTTCC
GGCGTCTCGATGTCGGAACTGAAGTCCATGCCCGCCACGCAGCAATCCTC
ACCAAGATCCGAGAGTGGCATCGGTTCCAATGAGAACGAGGCTCCGGCGA
CCAGTCCGCGACCCCAGACAAGCAACGCCGCTCGTCAGGCTCTAAGGCAA
CGCCAGGAGGAGGAGTATCACTACATGGCCCAGGCGGCAGCTGCTGCAGC
AGCAGCTGGGCAAGATGAGAGCATGTGGCGACCCTGGTGACGAAGCTTTC
TAGACCAT

BS02575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 1524 CG10446-PA 1..1524 17..1540 7620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 348..1871 17..1540 7620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029301..19030463 378..1540 5815 100 Plus
2L 23513712 2L 19028800..19029112 65..377 1565 100 Plus
2L 23513712 2L 19028057..19028106 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:22:35 has no hits.

BS02575.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:13 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1..1524 17..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:51 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 341..1875 10..1548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:00 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 348..1872 17..1542 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:13 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 341..1875 10..1548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:11 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 348..1872 17..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:11 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19028057..19028105 17..65 100 -> Plus
2L 19028801..19029112 66..377 100 -> Plus
2L 19029301..19030464 378..1542 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:00 Download gff for BS02575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19028057..19028105 17..65 100 -> Plus
arm_2L 19028801..19029112 66..377 100 -> Plus
arm_2L 19029301..19030464 378..1542 99   Plus

BS02575.pep Sequence

Translation from 16 to 1539

> BS02575.pep
MTAKRDKDYSKNKSAPGIGFTAAGSTNGSGIKSIGLVSSTQNVTSSQDIS
KRTNKPLMEKRRRARINQSLAILKALILESTKTQNAKNGEGQAKHTKLEK
ADILELTVRHFQRHRNLDDPTVNKYRAGYTDCAREVARYLATPEPPPMGT
MPTLAEPGSKARLLRHLDQCIAEIDVEICPHSTAAFAESPSSSSCFDLNH
GKKSQPEEHSLDYSSQDSNPVDYSKGLKMVAAEQRTLPVTPAPQDENNNR
GLQAQAQTPIPIQVQSQTQGQTSPHVDAVAPSELSYEEDRNKVCANVLEQ
YKQQLKAHVQQQPESANGVLVLPPHYVQLAAALGLSAQPLVDPIATRTDF
ERLIELQRVQPHLAGKLSPSFPGGLEAAHVAAAAAAYANSMAVAASAGAS
VAAMATSGAGTPTVHQERPASVAASVSSGVSMSELKSMPATQQSSPRSES
GIGSNENEAPATSPRPQTSNAARQALRQRQEEEYHYMAQAAAAAAAAGQD
ESMWRPW*

BS02575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Side-PA 507 CG10446-PA 1..507 1..507 2575 100 Plus
h-PB 337 CG6494-PB 4..290 19..388 282 27.8 Plus
h-PA 337 CG6494-PA 4..290 19..388 282 27.8 Plus
dpn-PA 435 CG8704-PA 41..435 51..507 238 24.9 Plus
Hey-PA 425 CG11194-PA 95..329 45..275 163 25.9 Plus