BS02755.complete Sequence
3833 bp assembled on 2010-05-10
GenBank Submission: KX799578
> BS02755.complete
GAAGTTATCAGTCGACATGGAGCGTCGTCGCTTTAACATGAGCAGCATGT
CACCCATGGCGGATTCCACGCGGATTGACGCGTCGCTGTTAAACAATCGT
CCGGCGGCCAGTAATTTCCTGAGGGGACTGAGTCCCAAGGGGTCGAATAC
CTCGCTCAATGGCACACGCACTCCGGAGCGGTCCTTGATGAATCGCTCTG
CCACATCGTCCAGTACCATAACGCGACAGAAACTGAACCTCAGTCAGGTT
GATCCCAGAACCTTTGCCGATGTGCATAGCAGCGGACTGTCATCCCGGAT
CGTGGCCTTAAGCGAACGCAGTGGTCTGCAACGCAGCATGTCCGCCAGCA
ATCTTTACAATCCCTTGACGCAGCCGCGCAGAGCGCCCGCTTCCCCGTTG
CCCTACAAGTCAAGGGCGCCGACGCTTTCGATCACGCAGATTGCACCACC
GGAGCGCAGCTTTTATTCCGGAAACACGCTGTCAAGCCTGTTGCGATCCA
ACTCCTTGGTAGGGTTAGTGCCAAAGACCACCGAACAGGAGCAGCTTTCG
AGAGAGAATCGACCCATATTGCACCCACCTCATCCACAGCATGAGAGCGA
GCCAACTAGAAGCGTGTTGGAGGAGCTTAAGGAGATCTCCCGAAAGCGCA
TCAACACTGAAGATACGCAACAGGCTCAAGACTACACGAAAAGGAGTTGC
CAGCAAAACGTGGACTTTGTGGACTTTGTGGCTCATCACCGTCAGCAACA
GAAACTACGTAATTTGCAGCAACAACAGAATCAGTCCTTTAAAAGGCAAC
GAGAGCTGACGGTATCGGTTCCGCTCAGGCATCATTCGACATCTTTGTCG
GCTGCTTCTCCTGCATTGCAACATATGAACTCGAATGGAACCATCTCCCC
AACACAATCTCCGGAGCAGGTAGCCAAACGTCCCAATTGTAGCTACAGCA
ACGACATCACTTCCTCGCTGAGTTCCAGTTGCCGTCACAGCAACAAGAGG
AAGCTGTTGGACATGCGAGAAAGGTTTCAGCACAGCAAAAACGACACACT
AGCTAGTGGAGGAAGCTCGCCTGAGAACTCGCCCGAAAATGTTGCCAAAA
TTCAACGTAAAGTTGATGCAGAAGCTGTTAGCAAGGCAATGAGCATGCCC
GTCGTGACTGTGGCGGCAGTTCCTGCTTCACGAGCCATTTCGGCTCCTGC
CATTCAAAAGGCAGTTCCGCAGGTGACGGAAAAACCTAAGCTTACACTCT
TCAATGCGCGACAATCTCAAACGATAGCGGAACAGCCGCGACCCGATTTG
AGTAGCCCGGAAGTAGATGCCGGCGAATATGCAGGCATTCAGTTCGTGAA
GCCTAAACAGCAGAATTCCATGCTGGCTGCCAAGAACCCTAGCGTAGAAC
GCACACACAAGACCAAACTAGCCATTATGCTAAGTGGATTGAAGGGCGAA
CTGTACCTGGGTGAGCCGGACGAACTAGATGCCCCAGCGCCGAAGTCAGC
GCCAGCGCCTGTGACGCTTCCTACTCCCGTCAAACCCATCATCATAGCTC
CTGTAACCACATCCACTACGACCGTTACGTCCACCGCAACCATATCAACT
TCTGCGCCCAGCAAGCCGATAATACTAAGTAACCAGGTTATAAAGCCAGC
AGATGTGCCAAATACGAATAGCACTGGCTCAGTGCCCAAACTTGTGCTTG
GTCAGCCTGCGCCGCCCGCTAAAACGGAACAAACACCACCAAAACCCATC
GACAAGGTCCCGGCAGCACAAGCAGATATCCCACCCAAGTTTGAGCTATC
AACCAAACCCGTTACTCCAGCAACATCATCTCAACCACTAATCAGTTTTG
GCACACCAAAATCCACAGCAGCACCATCATTCTCGTTTGGAAGTGCGACC
AATACCACTAGTAGCACTATTGCTAATATCACCAATACTACCACATCAAA
GCCCATATTCTCGTTCGGACAAACGCCTGCCAATGGTCCCACAGTAGGCG
GCCTTTCTGGATTCAAAACTGAAGCTCCAGCAACAACTTCGGTTAGCACA
ACTAATCCTGGGACACAGGTTACATCAACAACTACTTTCGGAGTGACACC
ACCCAAAACGACGACTACAGTTGCTCCGACTACAACTGTATCGCTAAATT
TCGGCCAGCCGATGCCATCATTTGGAGCAGCAGACACGGGGGTGAAACCG
ATGTTCTCCTTTGGTAAATCGAACAATTTAAGTTCAGGAACTCCGACAAC
AAATGGCAGCGATGCAGCTGCCGCCAAGCCTGCTGTATTCAGTTTTGGAG
GTAGCACCACTCAGCCCGCTGCAGCTGCACCGACACCGGTATTCGGAAGC
CTATCGAAACCCCTAGGCGAAGGTTTTGCATCGCCCGGGGCTAACAAATC
CGAGACAACTAAGCCGAGCATTTTTGGCAATTTGGACAACGGACTTGGAA
ACGCAATGAAGTCATCAACTAATGTAGCAGCCACAACCGCCGCCGAGCTT
CCCAAGCCATTTGGCTTCGCAGCTACAACAACCGCTGCTGGCGGAGGATC
AACTGCCACAAATCTCTTTTCATTTGGAGGGACGGCCACTTCAAAGGCAG
CGGAACCAGCTCCAGCTAGCCAAAAAAACCTTTTTGGACTAAATGCAACC
ACAACTACGCCCTTTGCATTCGGAGGAGCAGCAGCGGGCGCCGCAGATAA
AAGTGAAAATAAGGACAACAAACCAATTGCATTTGCATTTGGTGCAGGTA
ACAACAGTGCGGTAGCCAACCCAAGTGGAGTATTTAGCTTTGGTGGCACG
GACAAGAGTGCACCACCAGCCTTTGGCAGCGGAACAACATCTGTTACATC
TGCCACAGCAACACCGACGAACAACACCTTTGGGTTTAGCACGACTCAGA
AGCCTGCAACACCAATGTTCGGAAGTGGATCAACGCAACAGTCTTCGACA
CCGGCAGTGGCAGCCACCAAACCTTTTACACTTGGTGGTGGGGCTCCTAC
TACACCGTCAGCATCTCCAGCATCTGGAGGATTCTCGTTTTCCGCCGTTG
CGACCAAAAATACTACGGCGCCAACAGCAGGAACAAATTTGTTTGGCAGC
CCCGCCAGCGCCAGCAAGCCAAGCTTCAACTTTGGAGGAAACACCGCCAC
CCAGGCGGCGGCAGCAGGATCACCAGCTGGTGGCTTCTCATTCGCCACGA
CCACCAAGAAGGAGGACTCAGCAAGCACCAATATGTTTGGGAGCCCCAAC
ACCGGAGTGGTGAAGCCTAACTTTAGCTTTTCAAGCAACAATCCAACTCC
AGCGCCTACCTTTGGCGGATTCGGTGCTCCAGCAGCGGCTGCACCAACAG
CAACTTCAACTAATCAGAGCAAGCCCTTTGCATTTGGGGCTAGCACTCCG
GCTGCTGCCCCCCAGCCGCCCTTGGGCGGCAATCTTTTTGCCAACGCAGT
GTCTGCTACCCAAAACCAAACAAAGCCGTCAGGAGTCTTCTCATTTGGTG
CGGCTAAGAGCACCGCCGGCACCACAGCCGGCAATGCTCCCTTCTCGTTT
GGAGGCGCATCTGCTGGCGGAATCGCCTCGCCGCCCAGCAATCAGGGTTT
AAATACCGCAAAGCCATTCAGCTTTGGTGGCGCTGGCGGCACTCCAGCCC
CGAATGTCTTTGGGAGCCCAGCCCCTGCACCGCCAGCAAGCAATCCAACC
GGGGGCTTCAACTTTGGCGGCGTCAGTCCGGCCCAGCAGGCGAATGCCGG
CAACATGTTTGCCCCCACACCGGAGAGTCGTCCGATACGAAAGGCCACTA
GGCGTCTGCAGAAATAAAAGCTTTCTAGACCAT
BS02755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14712-RA | 3801 | CG14712-PA | 1..3801 | 17..3817 | 19005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14712-RA | 4250 | CG14712-RA | 182..3983 | 16..3817 | 19010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11629784..11632939 | 662..3817 | 15780 | 100 | Plus |
| 3R | 32079331 | 3R | 11629315..11629721 | 256..662 | 2035 | 100 | Plus |
| 3R | 32079331 | 3R | 11629081..11629248 | 91..258 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 11628940..11629014 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2417 | 734..784 | 120 | 70.6 | Plus |
BS02755.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:36 Download gff for
BS02755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 181..3973 | 17..3809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:48 Download gff for
BS02755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 183..3975 | 17..3809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:41 Download gff for
BS02755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 183..3975 | 17..3809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:41 Download gff for
BS02755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11629081..11629248 | 91..258 | 100 | -> | Plus |
| 3R | 11629318..11629720 | 259..661 | 100 | -> | Plus |
| 3R | 11628941..11629014 | 17..90 | 100 | -> | Plus |
| 3R | 11629784..11632931 | 662..3809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:48 Download gff for
BS02755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7454663..7454736 | 17..90 | 100 | -> | Plus |
| arm_3R | 7454803..7454970 | 91..258 | 100 | -> | Plus |
| arm_3R | 7455040..7455442 | 259..661 | 100 | -> | Plus |
| arm_3R | 7455506..7458653 | 662..3809 | 100 | | Plus |
BS02755.pep Sequence
Translation from 16 to 3816
> BS02755.pep
MERRRFNMSSMSPMADSTRIDASLLNNRPAASNFLRGLSPKGSNTSLNGT
RTPERSLMNRSATSSSTITRQKLNLSQVDPRTFADVHSSGLSSRIVALSE
RSGLQRSMSASNLYNPLTQPRRAPASPLPYKSRAPTLSITQIAPPERSFY
SGNTLSSLLRSNSLVGLVPKTTEQEQLSRENRPILHPPHPQHESEPTRSV
LEELKEISRKRINTEDTQQAQDYTKRSCQQNVDFVDFVAHHRQQQKLRNL
QQQQNQSFKRQRELTVSVPLRHHSTSLSAASPALQHMNSNGTISPTQSPE
QVAKRPNCSYSNDITSSLSSSCRHSNKRKLLDMRERFQHSKNDTLASGGS
SPENSPENVAKIQRKVDAEAVSKAMSMPVVTVAAVPASRAISAPAIQKAV
PQVTEKPKLTLFNARQSQTIAEQPRPDLSSPEVDAGEYAGIQFVKPKQQN
SMLAAKNPSVERTHKTKLAIMLSGLKGELYLGEPDELDAPAPKSAPAPVT
LPTPVKPIIIAPVTTSTTTVTSTATISTSAPSKPIILSNQVIKPADVPNT
NSTGSVPKLVLGQPAPPAKTEQTPPKPIDKVPAAQADIPPKFELSTKPVT
PATSSQPLISFGTPKSTAAPSFSFGSATNTTSSTIANITNTTTSKPIFSF
GQTPANGPTVGGLSGFKTEAPATTSVSTTNPGTQVTSTTTFGVTPPKTTT
TVAPTTTVSLNFGQPMPSFGAADTGVKPMFSFGKSNNLSSGTPTTNGSDA
AAAKPAVFSFGGSTTQPAAAAPTPVFGSLSKPLGEGFASPGANKSETTKP
SIFGNLDNGLGNAMKSSTNVAATTAAELPKPFGFAATTTAAGGGSTATNL
FSFGGTATSKAAEPAPASQKNLFGLNATTTTPFAFGGAAAGAADKSENKD
NKPIAFAFGAGNNSAVANPSGVFSFGGTDKSAPPAFGSGTTSVTSATATP
TNNTFGFSTTQKPATPMFGSGSTQQSSTPAVAATKPFTLGGGAPTTPSAS
PASGGFSFSAVATKNTTAPTAGTNLFGSPASASKPSFNFGGNTATQAAAA
GSPAGGFSFATTTKKEDSASTNMFGSPNTGVVKPNFSFSSNNPTPAPTFG
GFGAPAAAAPTATSTNQSKPFAFGASTPAAAPQPPLGGNLFANAVSATQN
QTKPSGVFSFGAAKSTAGTTAGNAPFSFGGASAGGIASPPSNQGLNTAKP
FSFGGAGGTPAPNVFGSPAPAPPASNPTGGFNFGGVSPAQQANAGNMFAP
TPESRPIRKATRRLQK*
BS02755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14712-PA | 1266 | CG14712-PA | 1..1266 | 1..1266 | 6452 | 100 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1292..1922 | 505..1154 | 373 | 27.3 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 1292..1866 | 505..1114 | 365 | 27.5 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1292..1866 | 505..1114 | 365 | 27.5 | Plus |
| Nup214-PA | 1711 | CG3820-PA | 934..1628 | 484..1239 | 350 | 27.6 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1161..1863 | 522..1247 | 327 | 25.4 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 1161..1858 | 522..1221 | 326 | 25.1 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1161..1858 | 522..1221 | 326 | 25.1 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1342..1912 | 460..1114 | 319 | 27.5 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1130..1783 | 592..1248 | 290 | 26.2 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 1130..1783 | 592..1248 | 290 | 25.6 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1130..1783 | 592..1248 | 290 | 25.6 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 1342..1869 | 460..999 | 285 | 27.5 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1342..1869 | 460..999 | 285 | 27.5 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 632..1588 | 253..1217 | 242 | 21.8 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 632..1588 | 253..1217 | 242 | 22 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 632..1588 | 253..1217 | 242 | 22 | Plus |
