Clone BS02803 Report

Search the DGRC for BS02803

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptsqh-RA
Protein status:BS02803.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02803.3prime Sequence

555 bp (554 high quality bases) assembled on 2005-11-30

> BS02803.3prime
ATGGTCTAGAAAGCTTTTACTGCTCATCCTTGTCCTTGGCACCGTGCTTA
AGGATGCGCGTGAATTCGAGGTAGTCGAACAGACCGTTTTTGATGGGCGC
CTCCCGATACATCTCGTCCACATCCTCGTCTGTGAACCGATCACCCATGG
TGGTCAGCAGCTCCCTCAGGCGATCCTCGGGCAGGACGCCCATATTCTCC
TCGTCGAAGCAGCCGAAGGCGTTCTTGATCACATCCTCGGGATCGGTGCC
CTGCAGCCGCTCGCCGAAGAGCGTGAGGAACATGGTGAAGTTGATGGGCC
CGGGCGCCTCGTTCATCATGCCATCGAGATAGTCGTCCGTTGGGTTCTTG
CCCAGCGAGGCCAGCATGTCGTGCAGATCCTCCTTCTCGACGAAGCCATC
ACGGTTCTGGTCGATCATGTTGAATGCCTCCTTGAACTCGGCAATCTGCG
CCTGATCGAACATGGCGAACACATTGGAGGTGGCGCGTTGGGCGCGCTTC
TTGGTGGTGGCGCGACGTCCGGCGGTCTTACGGGATGACATGTCGACTGA
TAACT

BS02803.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3595-PA 525 sqh-RA 1..525 541..17 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..678 542..17 2630 100 Minus
sqh-RD 1097 CG3595-RD 226..751 542..17 2630 100 Minus
sqh-RC 1403 CG3595-RC 532..1057 542..17 2630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 120..542 2115 100 Plus
X 23542271 X 6223407..6223511 17..121 525 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:41:18 has no hits.

BS02803.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:30 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-PA 1..525 17..541 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:45 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3595-PA 1..525 17..541 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:48:09 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 215..747 17..549 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:31 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 525..1057 17..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:31 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6223407..6223511 17..121 100 <- Plus
X 6223585..6224012 122..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:09 Download gff for BS02803.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117440..6117544 17..121 100 <- Plus
arm_X 6117618..6118045 122..549 99   Plus

BS02803.5prime Sequence

555 bp (554 high quality bases) assembled on 2005-11-30

> BS02803.5prime
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGTAAAAGCTTTCT
AGACC

BS02803.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3595-PA 525 sqh-RA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..678 16..541 2630 100 Plus
sqh-RD 1097 CG3595-RD 226..751 16..541 2630 100 Plus
sqh-RC 1403 CG3595-RC 532..1057 16..541 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 438..16 2115 100 Minus
X 23542271 X 6223407..6223511 541..437 525 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:42:17 has no hits.

BS02803.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:31 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-PA 1..525 17..541 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:47 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3595-PA 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:04:37 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 215..747 9..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:07 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 525..1057 9..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:07 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6223407..6223511 437..541 100 <- Minus
X 6223585..6224012 9..436 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:04:37 Download gff for BS02803.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117440..6117544 437..541 100 <- Minus
arm_X 6117618..6118045 9..436 99   Minus

BS02803.complete Sequence

557 bp (557 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634675

> BS02803.complete
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGTAAAAGCTTTCT
AGACCAT

BS02803.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 525 CG3595-PE 1..525 17..541 2625 100 Plus
sqh-RD 525 CG3595-PD 1..525 17..541 2625 100 Plus
sqh-RC 525 CG3595-PC 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..678 16..541 2630 100 Plus
sqh-RD 1097 CG3595-RD 226..751 16..541 2630 100 Plus
sqh-RC 1403 CG3595-RC 532..1057 16..541 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 438..16 2115 100 Minus
X 23542271 X 6223407..6223511 541..437 525 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:44:36 has no hits.

BS02803.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:14 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:52 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 262..794 9..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:39 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 223..745 17..539 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:14 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 262..794 9..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:26 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 533..1055 17..539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:26 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
X 6223409..6223511 437..539 100 <- Minus
X 6223585..6224004 17..436 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:39 Download gff for BS02803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117442..6117544 437..539 100 <- Minus
arm_X 6117618..6118037 17..436 100   Minus

BS02803.pep Sequence

Translation from 16 to 540

> BS02803.pep
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQ*

BS02803.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-PE 174 CG3595-PE 1..174 1..174 909 100 Plus
sqh-PD 174 CG3595-PD 1..174 1..174 909 100 Plus
sqh-PC 174 CG3595-PC 1..174 1..174 909 100 Plus
sqh-PB 174 CG3595-PB 1..174 1..174 909 100 Plus
sqh-PA 174 CG3595-PA 1..174 1..174 909 100 Plus