Clone Sequence Records
BS02803.3prime Sequence
555 bp (554 high quality bases) assembled on 2005-11-30
> BS02803.3prime
ATGGTCTAGAAAGCTTTTACTGCTCATCCTTGTCCTTGGCACCGTGCTTA
AGGATGCGCGTGAATTCGAGGTAGTCGAACAGACCGTTTTTGATGGGCGC
CTCCCGATACATCTCGTCCACATCCTCGTCTGTGAACCGATCACCCATGG
TGGTCAGCAGCTCCCTCAGGCGATCCTCGGGCAGGACGCCCATATTCTCC
TCGTCGAAGCAGCCGAAGGCGTTCTTGATCACATCCTCGGGATCGGTGCC
CTGCAGCCGCTCGCCGAAGAGCGTGAGGAACATGGTGAAGTTGATGGGCC
CGGGCGCCTCGTTCATCATGCCATCGAGATAGTCGTCCGTTGGGTTCTTG
CCCAGCGAGGCCAGCATGTCGTGCAGATCCTCCTTCTCGACGAAGCCATC
ACGGTTCTGGTCGATCATGTTGAATGCCTCCTTGAACTCGGCAATCTGCG
CCTGATCGAACATGGCGAACACATTGGAGGTGGCGCGTTGGGCGCGCTTC
TTGGTGGTGGCGCGACGTCCGGCGGTCTTACGGGATGACATGTCGACTGA
TAACT
BS02803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3595-PA | 525 | sqh-RA | 1..525 | 541..17 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..678 | 542..17 | 2630 | 100 | Minus |
sqh-RD | 1097 | CG3595-RD | 226..751 | 542..17 | 2630 | 100 | Minus |
sqh-RC | 1403 | CG3595-RC | 532..1057 | 542..17 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 120..542 | 2115 | 100 | Plus |
X | 23542271 | X | 6223407..6223511 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:41:18 has no hits.
BS02803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:30 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-PA | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:45 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3595-PA | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:48:09 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 215..747 | 17..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:31 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 525..1057 | 17..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:31 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223407..6223511 | 17..121 | 100 | <- | Plus |
X | 6223585..6224012 | 122..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:09 Download gff for
BS02803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117440..6117544 | 17..121 | 100 | <- | Plus |
arm_X | 6117618..6118045 | 122..549 | 99 | | Plus |
BS02803.5prime Sequence
555 bp (554 high quality bases) assembled on 2005-11-30
> BS02803.5prime
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGTAAAAGCTTTCT
AGACC
BS02803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3595-PA | 525 | sqh-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..678 | 16..541 | 2630 | 100 | Plus |
sqh-RD | 1097 | CG3595-RD | 226..751 | 16..541 | 2630 | 100 | Plus |
sqh-RC | 1403 | CG3595-RC | 532..1057 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 438..16 | 2115 | 100 | Minus |
X | 23542271 | X | 6223407..6223511 | 541..437 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:42:17 has no hits.
BS02803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:31 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-PA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:47 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3595-PA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:04:37 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 215..747 | 9..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:07 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 525..1057 | 9..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:07 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223407..6223511 | 437..541 | 100 | <- | Minus |
X | 6223585..6224012 | 9..436 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:04:37 Download gff for
BS02803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117440..6117544 | 437..541 | 100 | <- | Minus |
arm_X | 6117618..6118045 | 9..436 | 99 | | Minus |
BS02803.complete Sequence
557 bp (557 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634675
> BS02803.complete
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGTAAAAGCTTTCT
AGACCAT
BS02803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 525 | CG3595-PE | 1..525 | 17..541 | 2625 | 100 | Plus |
sqh-RD | 525 | CG3595-PD | 1..525 | 17..541 | 2625 | 100 | Plus |
sqh-RC | 525 | CG3595-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..678 | 16..541 | 2630 | 100 | Plus |
sqh-RD | 1097 | CG3595-RD | 226..751 | 16..541 | 2630 | 100 | Plus |
sqh-RC | 1403 | CG3595-RC | 532..1057 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 438..16 | 2115 | 100 | Minus |
X | 23542271 | X | 6223407..6223511 | 541..437 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:44:36 has no hits.
BS02803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:14 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:52 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 262..794 | 9..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:39 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 223..745 | 17..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:14 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 262..794 | 9..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:26 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 533..1055 | 17..539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:26 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223409..6223511 | 437..539 | 100 | <- | Minus |
X | 6223585..6224004 | 17..436 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:39 Download gff for
BS02803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117442..6117544 | 437..539 | 100 | <- | Minus |
arm_X | 6117618..6118037 | 17..436 | 100 | | Minus |
BS02803.pep Sequence
Translation from 16 to 540
> BS02803.pep
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQ*
BS02803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-PE | 174 | CG3595-PE | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PD | 174 | CG3595-PD | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PC | 174 | CG3595-PC | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PB | 174 | CG3595-PB | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PA | 174 | CG3595-PA | 1..174 | 1..174 | 909 | 100 | Plus |