Clone Sequence Records
BS02810.3prime Sequence
666 bp (665 high quality bases) assembled on 2005-11-30
> BS02810.3prime
ATGGTCTAGAAAGCTTTTATGAATGATATGGCGTCACATAAGTTGCTGGG
AAGATGCCTTTCCTATTGCCGATCTCGCCGTTCCACCAGTTCTCATCGGA
GCGATCTGTGACGGTGATGACATCGCCGCGTCTGAAGTCCAATTCCCCGG
ATTCCTGTGGCACAAAATCGTACAGCGCCTGCACGAGCATCTCTTCAGGT
ATCATATCACGCAATTTGACATCCTGCGACCGGGACACGCTCGCCGTCCG
ATGATATTCGACCAGTTCGTTGAGGGAGTTGAACTTGACCACCCAGAGGA
AGAATTTGCTTTGGGCATCGCGCAGAACCTTGAAATGCTGAACGCCATCG
GGGCATTTGACTGATAAGGAGAAATCGCCGGGACTGGATTCGCTGATGCG
TATCAAGAAGGCGCCTTCGTGCTTATTTGACAGCAGCTTCTCAGCATCGG
CGCGTGTGATGCGTCCGTAATACCAGTCGTGATTCTTCATTTCTATGTAA
TTACTAGGTATGAGGCCTTCCTTTCCATCCAGCTCCGCGCGATACCAATT
TGAATCGTCTTCCATATTTAATATCTTTAGAATCTGAGTTTTGCGAAAAC
TCAGCTCGTCGTCAGCCGTCGCAGAGAAATCGTGTTTGGCAATCGCTTCC
ATGTCGACTGATAACT
BS02810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6033-PE | 636 | drk-RE | 1..636 | 652..17 | 3180 | 100 | Minus |
CG6033-PC | 636 | drk-RC | 1..636 | 652..17 | 3180 | 100 | Minus |
CG6033-PB | 636 | drk-RB | 1..636 | 652..17 | 3180 | 100 | Minus |
CG6033-PA | 636 | drk-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
CG6033-PF | 636 | drk-RF | 1..636 | 652..17 | 3180 | 100 | Minus |
CG6033-PD | 636 | drk-RD | 1..636 | 652..17 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1039 | 652..17 | 3180 | 100 | Minus |
drk-RF | 2577 | CG6033-RF | 186..821 | 652..17 | 3180 | 100 | Minus |
drk-RA | 2744 | CG6033-RA | 353..988 | 652..17 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496978..13497153 | 17..192 | 880 | 100 | Plus |
2R | 25286936 | 2R | 13497368..13497537 | 191..360 | 835 | 99.4 | Plus |
2R | 25286936 | 2R | 13497613..13497732 | 357..476 | 600 | 100 | Plus |
2R | 25286936 | 2R | 13497792..13497891 | 477..576 | 500 | 100 | Plus |
2R | 25286936 | 2R | 13501813..13501890 | 575..652 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:27:20 has no hits.
BS02810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:32 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-PB | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:48 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6033-PD | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:57 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..998 | 8..660 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:40 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..998 | 8..660 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:40 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496968..13497151 | 8..190 | 97 | <- | Plus |
2R | 13497368..13497533 | 191..356 | 100 | <- | Plus |
2R | 13497613..13497732 | 357..476 | 100 | <- | Plus |
2R | 13497792..13497889 | 477..574 | 100 | <- | Plus |
2R | 13501813..13501897 | 575..660 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:57 Download gff for
BS02810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9385297..9385394 | 477..574 | 100 | <- | Plus |
arm_2R | 9389318..9389402 | 575..660 | 96 | | Plus |
arm_2R | 9384473..9384656 | 8..190 | 97 | <- | Plus |
arm_2R | 9384873..9385038 | 191..356 | 100 | <- | Plus |
arm_2R | 9385118..9385237 | 357..476 | 100 | <- | Plus |
BS02810.5prime Sequence
666 bp (616 high quality bases) assembled on 2005-11-30
> BS02810.5prime
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAT
AAAAGCTTTCTAGACC
BS02810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6033-PE | 636 | drk-RE | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6033-PC | 636 | drk-RC | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6033-PB | 636 | drk-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6033-PA | 636 | drk-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6033-PF | 636 | drk-RF | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6033-PD | 636 | drk-RD | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1039 | 17..652 | 3180 | 100 | Plus |
drk-RF | 2577 | CG6033-RF | 186..821 | 17..652 | 3180 | 100 | Plus |
drk-RA | 2744 | CG6033-RA | 353..988 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496978..13497153 | 652..477 | 880 | 100 | Minus |
2R | 25286936 | 2R | 13497368..13497537 | 478..309 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 13497613..13497732 | 312..193 | 600 | 100 | Minus |
2R | 25286936 | 2R | 13497792..13497891 | 192..93 | 500 | 100 | Minus |
2R | 25286936 | 2R | 13501813..13501890 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:47:17 has no hits.
BS02810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:33 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-PB | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:49 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6033-PD | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:50:46 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..998 | 9..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:15 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..998 | 9..661 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:15 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496968..13497151 | 479..661 | 97 | <- | Minus |
2R | 13497368..13497533 | 313..478 | 100 | <- | Minus |
2R | 13497613..13497732 | 193..312 | 100 | <- | Minus |
2R | 13497792..13497889 | 95..192 | 100 | <- | Minus |
2R | 13501813..13501897 | 9..94 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:50:46 Download gff for
BS02810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384473..9384656 | 479..661 | 97 | <- | Minus |
arm_2R | 9384873..9385038 | 313..478 | 100 | <- | Minus |
arm_2R | 9385118..9385237 | 193..312 | 100 | <- | Minus |
arm_2R | 9385297..9385394 | 95..192 | 100 | <- | Minus |
arm_2R | 9389318..9389402 | 9..94 | 96 | | Minus |
BS02810.complete Sequence
668 bp (668 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634676
> BS02810.complete
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAT
AAAAGCTTTCTAGACCAT
BS02810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 636 | CG6033-PD | 1..636 | 17..652 | 3180 | 100 | Plus |
drk-RF | 636 | CG6033-PF | 1..636 | 17..652 | 3180 | 100 | Plus |
drk-RA | 636 | CG6033-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1039 | 17..652 | 3180 | 100 | Plus |
drk-RF | 2577 | CG6033-RF | 186..821 | 17..652 | 3180 | 100 | Plus |
drk-RA | 2744 | CG6033-RA | 353..988 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496978..13497153 | 652..477 | 880 | 100 | Minus |
2R | 25286936 | 2R | 13497368..13497537 | 478..309 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 13497613..13497732 | 312..193 | 600 | 100 | Minus |
2R | 25286936 | 2R | 13497792..13497891 | 192..93 | 500 | 100 | Minus |
2R | 25286936 | 2R | 13501813..13501890 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:47 has no hits.
BS02810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:15 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:54 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 273..925 | 9..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:21 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 353..986 | 17..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:15 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 273..925 | 9..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:44 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 353..986 | 17..650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:44 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496980..13497151 | 479..650 | 100 | <- | Minus |
2R | 13497368..13497533 | 313..478 | 100 | <- | Minus |
2R | 13497613..13497732 | 193..312 | 100 | <- | Minus |
2R | 13497792..13497889 | 95..192 | 100 | <- | Minus |
2R | 13501813..13501890 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:21 Download gff for
BS02810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384485..9384656 | 479..650 | 100 | <- | Minus |
arm_2R | 9384873..9385038 | 313..478 | 100 | <- | Minus |
arm_2R | 9385118..9385237 | 193..312 | 100 | <- | Minus |
arm_2R | 9385297..9385394 | 95..192 | 100 | <- | Minus |
arm_2R | 9389318..9389395 | 17..94 | 100 | | Minus |
BS02810.pep Sequence
Translation from 16 to 651
> BS02810.pep
MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPS
NYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKC
PDGVQHFKVLRDAQSKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM
IPEEMLVQALYDFVPQESGELDFRRGDVITVTDRSDENWWNGEIGNRKGI
FPATYVTPYHS*
BS02810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-PD | 211 | CG6033-PD | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PF | 211 | CG6033-PF | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PA | 211 | CG6033-PA | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PB | 211 | CG6033-PB | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PC | 211 | CG6033-PC | 1..211 | 1..211 | 1115 | 100 | Plus |