Clone BS02810 Report

Search the DGRC for BS02810

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptdrk-RA
Protein status:BS02810.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02810.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-11-30

> BS02810.3prime
ATGGTCTAGAAAGCTTTTATGAATGATATGGCGTCACATAAGTTGCTGGG
AAGATGCCTTTCCTATTGCCGATCTCGCCGTTCCACCAGTTCTCATCGGA
GCGATCTGTGACGGTGATGACATCGCCGCGTCTGAAGTCCAATTCCCCGG
ATTCCTGTGGCACAAAATCGTACAGCGCCTGCACGAGCATCTCTTCAGGT
ATCATATCACGCAATTTGACATCCTGCGACCGGGACACGCTCGCCGTCCG
ATGATATTCGACCAGTTCGTTGAGGGAGTTGAACTTGACCACCCAGAGGA
AGAATTTGCTTTGGGCATCGCGCAGAACCTTGAAATGCTGAACGCCATCG
GGGCATTTGACTGATAAGGAGAAATCGCCGGGACTGGATTCGCTGATGCG
TATCAAGAAGGCGCCTTCGTGCTTATTTGACAGCAGCTTCTCAGCATCGG
CGCGTGTGATGCGTCCGTAATACCAGTCGTGATTCTTCATTTCTATGTAA
TTACTAGGTATGAGGCCTTCCTTTCCATCCAGCTCCGCGCGATACCAATT
TGAATCGTCTTCCATATTTAATATCTTTAGAATCTGAGTTTTGCGAAAAC
TCAGCTCGTCGTCAGCCGTCGCAGAGAAATCGTGTTTGGCAATCGCTTCC
ATGTCGACTGATAACT

BS02810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6033-PE 636 drk-RE 1..636 652..17 3180 100 Minus
CG6033-PC 636 drk-RC 1..636 652..17 3180 100 Minus
CG6033-PB 636 drk-RB 1..636 652..17 3180 100 Minus
CG6033-PA 636 drk-RA 1..636 652..17 3180 100 Minus
CG6033-PF 636 drk-RF 1..636 652..17 3180 100 Minus
CG6033-PD 636 drk-RD 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1039 652..17 3180 100 Minus
drk-RF 2577 CG6033-RF 186..821 652..17 3180 100 Minus
drk-RA 2744 CG6033-RA 353..988 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496978..13497153 17..192 880 100 Plus
2R 25286936 2R 13497368..13497537 191..360 835 99.4 Plus
2R 25286936 2R 13497613..13497732 357..476 600 100 Plus
2R 25286936 2R 13497792..13497891 477..576 500 100 Plus
2R 25286936 2R 13501813..13501890 575..652 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:27:20 has no hits.

BS02810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:32 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-PB 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:48 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6033-PD 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:57 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..998 8..660 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:40 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..998 8..660 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:40 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13496968..13497151 8..190 97 <- Plus
2R 13497368..13497533 191..356 100 <- Plus
2R 13497613..13497732 357..476 100 <- Plus
2R 13497792..13497889 477..574 100 <- Plus
2R 13501813..13501897 575..660 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:57 Download gff for BS02810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9385297..9385394 477..574 100 <- Plus
arm_2R 9389318..9389402 575..660 96   Plus
arm_2R 9384473..9384656 8..190 97 <- Plus
arm_2R 9384873..9385038 191..356 100 <- Plus
arm_2R 9385118..9385237 357..476 100 <- Plus

BS02810.5prime Sequence

666 bp (616 high quality bases) assembled on 2005-11-30

> BS02810.5prime
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAT
AAAAGCTTTCTAGACC

BS02810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6033-PE 636 drk-RE 1..636 17..652 3180 100 Plus
CG6033-PC 636 drk-RC 1..636 17..652 3180 100 Plus
CG6033-PB 636 drk-RB 1..636 17..652 3180 100 Plus
CG6033-PA 636 drk-RA 1..636 17..652 3180 100 Plus
CG6033-PF 636 drk-RF 1..636 17..652 3180 100 Plus
CG6033-PD 636 drk-RD 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1039 17..652 3180 100 Plus
drk-RF 2577 CG6033-RF 186..821 17..652 3180 100 Plus
drk-RA 2744 CG6033-RA 353..988 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496978..13497153 652..477 880 100 Minus
2R 25286936 2R 13497368..13497537 478..309 835 99.4 Minus
2R 25286936 2R 13497613..13497732 312..193 600 100 Minus
2R 25286936 2R 13497792..13497891 192..93 500 100 Minus
2R 25286936 2R 13501813..13501890 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:47:17 has no hits.

BS02810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:33 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-PB 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:49 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6033-PD 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:50:46 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..998 9..661 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:15 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..998 9..661 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:15 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13496968..13497151 479..661 97 <- Minus
2R 13497368..13497533 313..478 100 <- Minus
2R 13497613..13497732 193..312 100 <- Minus
2R 13497792..13497889 95..192 100 <- Minus
2R 13501813..13501897 9..94 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:50:46 Download gff for BS02810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9384473..9384656 479..661 97 <- Minus
arm_2R 9384873..9385038 313..478 100 <- Minus
arm_2R 9385118..9385237 193..312 100 <- Minus
arm_2R 9385297..9385394 95..192 100 <- Minus
arm_2R 9389318..9389402 9..94 96   Minus

BS02810.complete Sequence

668 bp (668 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634676

> BS02810.complete
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAT
AAAAGCTTTCTAGACCAT

BS02810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 636 CG6033-PD 1..636 17..652 3180 100 Plus
drk-RF 636 CG6033-PF 1..636 17..652 3180 100 Plus
drk-RA 636 CG6033-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1039 17..652 3180 100 Plus
drk-RF 2577 CG6033-RF 186..821 17..652 3180 100 Plus
drk-RA 2744 CG6033-RA 353..988 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496978..13497153 652..477 880 100 Minus
2R 25286936 2R 13497368..13497537 478..309 835 99.4 Minus
2R 25286936 2R 13497613..13497732 312..193 600 100 Minus
2R 25286936 2R 13497792..13497891 192..93 500 100 Minus
2R 25286936 2R 13501813..13501890 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:52:47 has no hits.

BS02810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:15 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:54 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 273..925 9..661 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:21 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RA 353..986 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:15 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 273..925 9..661 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:44 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RA 353..986 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:44 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13496980..13497151 479..650 100 <- Minus
2R 13497368..13497533 313..478 100 <- Minus
2R 13497613..13497732 193..312 100 <- Minus
2R 13497792..13497889 95..192 100 <- Minus
2R 13501813..13501890 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:21 Download gff for BS02810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9384485..9384656 479..650 100 <- Minus
arm_2R 9384873..9385038 313..478 100 <- Minus
arm_2R 9385118..9385237 193..312 100 <- Minus
arm_2R 9385297..9385394 95..192 100 <- Minus
arm_2R 9389318..9389395 17..94 100   Minus

BS02810.pep Sequence

Translation from 16 to 651

> BS02810.pep
MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPS
NYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKC
PDGVQHFKVLRDAQSKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM
IPEEMLVQALYDFVPQESGELDFRRGDVITVTDRSDENWWNGEIGNRKGI
FPATYVTPYHS*

BS02810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
drk-PD 211 CG6033-PD 1..211 1..211 1115 100 Plus
drk-PF 211 CG6033-PF 1..211 1..211 1115 100 Plus
drk-PA 211 CG6033-PA 1..211 1..211 1115 100 Plus
drk-PB 211 CG6033-PB 1..211 1..211 1115 100 Plus
drk-PC 211 CG6033-PC 1..211 1..211 1115 100 Plus