Clone Sequence Records
BS02812.3prime Sequence
606 bp (605 high quality bases) assembled on 2005-11-30
> BS02812.3prime
ATGGTCTAGAAAGCTTTTAAATGCACTTACCCGTTACCATGTTATTCAGT
TTCTTTGGCATATTGCTTAAATTATTATCTAGGGCTACGTTTCTCCCTGC
TATCGGTATCACTGTTAGCTTTCCGCCCAGTGCCACGCCTCCAACTGTTG
GCGTAGCACCCACAGTGGTTGGTGTTGTTGTTACTGTTGTTGTTTTTATT
ATCTGGCTGTTGTTGTTGATGCTATTGTTGTTGTTATTGCTGCTGCCGTT
GGTGCTGATGATATTGTTGTTGTTTCTATTGTTAACACTGGTGACTATAT
TGTTGTTATTGTTGTTAATGCGCAACAACGATATTGGCTTGATTTTATTA
TTGCCAACAACAATTTTCGCCCCACTTATGGGTATGGGTATACCGCCTTT
GGGCGCCACGCCCACTCCGCTACGGATATTTTGGGCGTACGTAACGGCTG
TGTTCAAATCGCGACCTCCACCGGGCACTTCTATTTGATCTGGATCCTCG
TCATCGTCGAAATCGGAGCCCGAATCGTCTTCATCAAAATTGTCATTGTC
GTCATCGGCATCCAACAGTGTTTTTCGTTTTTTCGATGTCATGTCGACTG
ATAACT
BS02812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1903-PA | 576 | sno-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
CG1903-PB | 4644 | sno-RB | 1..562 | 592..31 | 2810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 592..31 | 2810 | 100 | Minus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 592..31 | 2810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203695..13204151 | 16..472 | 2285 | 100 | Plus |
X | 23542271 | X | 13206709..13206830 | 469..590 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 14:05:01 has no hits.
BS02812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:36 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:53 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1903-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:07:01 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 21..597 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:54:38 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 21..597 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:54:38 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13203690..13204150 | 10..471 | 99 | <- | Plus |
X | 13206712..13206833 | 472..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:07:01 Download gff for
BS02812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097723..13098183 | 10..471 | 99 | <- | Plus |
arm_X | 13100745..13100866 | 472..594 | 99 | | Plus |
BS02812.5prime Sequence
606 bp (605 high quality bases) assembled on 2005-11-30
> BS02812.5prime
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAAAGCTTTC
TAGACC
BS02812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1903-PA | 576 | sno-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG1903-PB | 4644 | sno-RB | 1..562 | 17..578 | 2810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 17..578 | 2810 | 100 | Plus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 17..578 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203695..13204151 | 593..137 | 2285 | 100 | Minus |
X | 23542271 | X | 13206709..13206830 | 140..19 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:47:00 has no hits.
BS02812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:37 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:55 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1903-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:50:44 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 12..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:45 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 12..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:45 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13203690..13204150 | 138..599 | 99 | <- | Minus |
X | 13206712..13206833 | 15..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:50:44 Download gff for
BS02812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097723..13098183 | 138..599 | 99 | <- | Minus |
arm_X | 13100745..13100866 | 15..137 | 99 | | Minus |
BS02812.complete Sequence
608 bp (608 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634677
> BS02812.complete
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAAAGCTTTC
TAGACCAT
BS02812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 4962 | CG44436-PB | 1..562 | 17..578 | 2810 | 100 | Plus |
sno-RA | 4644 | CG44436-PA | 1..562 | 17..578 | 2810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 17..578 | 2810 | 100 | Plus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 17..578 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203695..13204151 | 593..137 | 2285 | 100 | Minus |
X | 23542271 | X | 13206709..13206830 | 140..19 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:55 has no hits.
BS02812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:16 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:56 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 560..1146 | 12..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:57 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 573..1142 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:16 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 560..1146 | 12..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:15 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 573..1142 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:15 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13203698..13204150 | 138..590 | 100 | <- | Minus |
X | 13206712..13206831 | 17..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:57 Download gff for
BS02812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097731..13098183 | 138..590 | 100 | <- | Minus |
arm_X | 13100745..13100864 | 17..137 | 99 | | Minus |
BS02812.pep Sequence
Translation from 16 to 591
> BS02812.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*
BS02812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-PA | 1547 | CG44436-PA | 1..187 | 1..187 | 961 | 100 | Plus |
sno-PB | 1653 | CG44436-PB | 1..187 | 1..187 | 961 | 100 | Plus |