Clone BS02812 Report

Search the DGRC for BS02812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptsno-RA
Protein status:BS02812.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02812.3prime Sequence

606 bp (605 high quality bases) assembled on 2005-11-30

> BS02812.3prime
ATGGTCTAGAAAGCTTTTAAATGCACTTACCCGTTACCATGTTATTCAGT
TTCTTTGGCATATTGCTTAAATTATTATCTAGGGCTACGTTTCTCCCTGC
TATCGGTATCACTGTTAGCTTTCCGCCCAGTGCCACGCCTCCAACTGTTG
GCGTAGCACCCACAGTGGTTGGTGTTGTTGTTACTGTTGTTGTTTTTATT
ATCTGGCTGTTGTTGTTGATGCTATTGTTGTTGTTATTGCTGCTGCCGTT
GGTGCTGATGATATTGTTGTTGTTTCTATTGTTAACACTGGTGACTATAT
TGTTGTTATTGTTGTTAATGCGCAACAACGATATTGGCTTGATTTTATTA
TTGCCAACAACAATTTTCGCCCCACTTATGGGTATGGGTATACCGCCTTT
GGGCGCCACGCCCACTCCGCTACGGATATTTTGGGCGTACGTAACGGCTG
TGTTCAAATCGCGACCTCCACCGGGCACTTCTATTTGATCTGGATCCTCG
TCATCGTCGAAATCGGAGCCCGAATCGTCTTCATCAAAATTGTCATTGTC
GTCATCGGCATCCAACAGTGTTTTTCGTTTTTTCGATGTCATGTCGACTG
ATAACT

BS02812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1903-PA 576 sno-RA 1..576 592..17 2880 100 Minus
CG1903-PB 4644 sno-RB 1..562 592..31 2810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 592..31 2810 100 Minus
sno-RA 5997 CG44436-RA 573..1134 592..31 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203695..13204151 16..472 2285 100 Plus
X 23542271 X 13206709..13206830 469..590 610 100 Plus
Blast to na_te.dros performed on 2015-02-03 14:05:01 has no hits.

BS02812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:36 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:53 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1903-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:07:01 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 21..597 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:54:38 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 21..597 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:54:38 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13203690..13204150 10..471 99 <- Plus
X 13206712..13206833 472..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:07:01 Download gff for BS02812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097723..13098183 10..471 99 <- Plus
arm_X 13100745..13100866 472..594 99   Plus

BS02812.5prime Sequence

606 bp (605 high quality bases) assembled on 2005-11-30

> BS02812.5prime
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAAAGCTTTC
TAGACC

BS02812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1903-PA 576 sno-RA 1..576 17..592 2880 100 Plus
CG1903-PB 4644 sno-RB 1..562 17..578 2810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 17..578 2810 100 Plus
sno-RA 5997 CG44436-RA 573..1134 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203695..13204151 593..137 2285 100 Minus
X 23542271 X 13206709..13206830 140..19 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:47:00 has no hits.

BS02812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:37 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:55 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1903-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:50:44 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 12..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:45 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 12..588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:45 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13203690..13204150 138..599 99 <- Minus
X 13206712..13206833 15..137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:50:44 Download gff for BS02812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097723..13098183 138..599 99 <- Minus
arm_X 13100745..13100866 15..137 99   Minus

BS02812.complete Sequence

608 bp (608 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634677

> BS02812.complete
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAAAGCTTTC
TAGACCAT

BS02812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 4962 CG44436-PB 1..562 17..578 2810 100 Plus
sno-RA 4644 CG44436-PA 1..562 17..578 2810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 17..578 2810 100 Plus
sno-RA 5997 CG44436-RA 573..1134 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203695..13204151 593..137 2285 100 Minus
X 23542271 X 13206709..13206830 140..19 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:42:55 has no hits.

BS02812.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:16 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:56 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 560..1146 12..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:57 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 573..1142 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:16 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 560..1146 12..599 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:15 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 573..1142 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:15 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
X 13203698..13204150 138..590 100 <- Minus
X 13206712..13206831 17..137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:57 Download gff for BS02812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097731..13098183 138..590 100 <- Minus
arm_X 13100745..13100864 17..137 99   Minus

BS02812.pep Sequence

Translation from 16 to 591

> BS02812.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*

BS02812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
sno-PA 1547 CG44436-PA 1..187 1..187 961 100 Plus
sno-PB 1653 CG44436-PB 1..187 1..187 961 100 Plus