Clone BS02817 Report

Search the DGRC for BS02817

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptLnk-RA
Protein status:BS02817.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02817.3prime Sequence

752 bp (702 high quality bases) assembled on 2005-11-30

> BS02817.3prime
ATGGTCTAGAAAGCTTTTAGGTGAAGCTGTACTGATTATCGACGGCCCGT
CCGGTGCACTCGGCTCCTCCACTGGATCCCGATCCGCCTCCTGCTCCGCC
GCTGTTGCTGCCGCCATCGCTGGGATGCCGGTTGCCGGAGGAACCCGCCT
GATGGTGGGCAGCTGCCTGAAGGGAGGCGTTCGAAGCCCGCAGATGTGGC
TGGTCCAGGAAATTCTGGGCCGGTGGCGGTGATCCGTGCACTGTTAGCGT
TGTGGGATCCAAATGGAAATAGACTTGCTCCGGAAAATAGACGTGTGTTG
GCTCCTGTGGCAGTTCGATTTCATTTGTCTTTAGGCGAACACTCAAATTC
ATGGTAATCACTTCGTTGCAATGTCTCGGCGACGGATGGCCACCGCCAGC
AGCTCCCGATGCAGTTCCTCCCGCCGCATTCGATGCCGTCGATGAACCCT
GACCATTATCGTAGCCATTGCCGTTCCCATTGCCATTCCCATTTGTCGAA
AGATCGTTGAGTTGTCCTGAGTCATGATTTGCTGCCGTCGTCGGGTCATT
CAGTCTGCTGTGTGAGTGCACCCATTCGGTAAGAGTCACATCCGAAGTGC
CGCCCGATTCCAGTGGTATCGGGTTGTGGCGGAAGTGTTCGAGCATTTCC
TGGATCGAGGGAAACCACAGGTGCTGCACCCGACACTGACCCTTCTCCGA
AATGGGGAGCCGCAAATGCTTGGCTCGTCCTTGGAAGTTAAGGTCAGAAC
GA

BS02817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17367-PC 2172 Lnk-RC 1448..2172 741..17 3600 99.8 Minus
CG17367-PB 2172 Lnk-RB 1448..2172 741..17 3600 99.8 Minus
CG17367-PA 2172 Lnk-RA 1448..2172 741..17 3600 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RD 3128 CG17367-RD 1924..2660 752..17 3645 99.7 Minus
Lnk-RA 3113 CG17367-RA 1909..2645 752..17 3645 99.7 Minus
Lnk-RB 2918 CG17367-RB 1714..2450 752..17 3645 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25891652..25892034 752..371 1850 99.5 Minus
3R 32079331 3R 25892445..25892802 374..17 1775 99.7 Minus
Blast to na_te.dros performed 2015-02-12 18:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8580..8697 120..4 119 56.8 Minus

BS02817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:38 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-PA 1437..2172 17..751 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:56 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17367-PA 1437..2172 17..751 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:54 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1715..2450 17..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:02 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1715..2450 17..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:02 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25891653..25892034 371..751 99 -> Minus
3R 25892449..25892802 17..370 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:54 Download gff for BS02817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21717375..21717756 371..751 99 -> Minus
arm_3R 21718171..21718524 17..370 100   Minus

BS02817.5prime Sequence

827 bp (699 high quality bases) assembled on 2005-11-30

> BS02817.5prime
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGGACA

BS02817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17367-PC 2172 Lnk-RC 1..811 17..827 4055 100 Plus
CG17367-PB 2172 Lnk-RB 1..811 17..827 4055 100 Plus
CG17367-PA 2172 Lnk-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RF 2951 CG17367-RF 279..1089 17..827 4055 100 Plus
Lnk-RA 3113 CG17367-RA 474..1284 17..827 4055 100 Plus
Lnk-RB 2918 CG17367-RB 279..1089 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25889778..25890279 17..518 2510 100 Plus
3R 32079331 3R 25890716..25891027 516..827 1560 100 Plus
Blast to na_te.dros performed 2015-02-04 03:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..202 78..146 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9232 78..146 118 66.7 Plus

BS02817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:40 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:30:57 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17367-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:05:20 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 279..1088 17..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:39 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 279..1088 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:39 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25889778..25890278 17..517 100 -> Plus
3R 25890718..25891026 518..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:05:20 Download gff for BS02817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21715500..21716000 17..517 100 -> Plus
arm_3R 21716440..21716748 518..826 100   Plus

BS02817.complete Sequence

2204 bp assembled on 2008-01-02

GenBank Submission: FJ634678

> BS02817.complete
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGGACAGGCTGAACACATTCGTCCTCAAG
GCAGACAACAACATGGAGTATGTGATTGAGGCGGAGAGCGCGGAGGAGAT
GCGGAGTTGGCTAGCCACAATACGGTACTGCATGCGAACGCCACCCACTC
AGCAGCCAACGATCGAGTCGGATGGTGTTATGGCGTCCGCCATGCAAACA
TCGCCGACACTTCCGAGTCCCAATCCCATTGGTGGGATTCAGAATCCGCA
GTACCAGCAGCAGCGCGGCTCGAATGGCAATCTGGTGGGAGGTGGAGCTC
CGCTCACCTCATCGCTGTCTGCAGACAGTGCTTTGGGCCAGGGAGGAGCC
ACTTCTGCCAGCGAACTAAATGTCATCAACGAATTGGGCACCTCACCGAC
CTCCGGGCCACCTGACATACCTGTAAGACCCCATCGAGGTGAACAGCGCC
TGTCCGCCTCAAGCAACTTCGATGGCATCGAGGGCACGGAAAATGATGCA
GATGTGGCGGATCTGACGGCTGAGATGAGCGTGTTTCCCTGGTTCCACGG
CACACTGACGCGATCAGAAGCTGCCAGAATGGTACTCCATTCGGATGCAG
CCGGACATGGATACTTTTTGGTGCGACAGAGCGAAACGCGCCGCGGCGAG
TTCGTTCTGACCTTTAACTTCCAAGGACGAGCCAAGCATTTGCGGCTCAC
CATTTCGGAGAAGGGTCAGTGTCGGGTGCAGCACCTGTGGTTTCCCTCGA
TCCAGGAAATGCTCGAACACTTCCGCCACAACCCGATACCACTGGAATCG
GGCGGCACTTCGGATGTGACTCTTACCGAATGGGTGCACTCACACAGCAG
ACTGAATGACCCGACGACGGCAGCAAATCATGACTCAGGACAACTCAACG
ATCTTTCGACAAATGGGAATGGCAATGGGAACGGCAATGGCTACGATAAT
GGTCAGGGTTCATCGACGGCATCGAATGCGGCGGGAGGAACTGCATCGGG
AGCTGCTGGCGGTGGCCATCCGTCGCCGAGACATTGCAACGAAGTGATTA
CCATGAATTTGAGTGTTCGCCTAAAGACAAATGAAATCGAACTGCCACAG
GAGCCAACACACGTCTATTTTCCGGAGCAAGTCTATTTCCATTTGGATCC
CACAACGCTAACAGTGCACGGATCACCGCCACCGGCCCAGAATTTCCTGG
ACCAGCCACATCTGCGGGCTTCGAACGCCTCCCTTCAGGCAGCTGCCCAC
CATCAGGCGGGTTCCTCCGGCAACCGGCATCCCAGCGATGGCGGCAGCAA
CAGCGGCGGAGCAGGAGGCGGATCGGGATCCAGTGGAGGAGCCGAGTGCA
CCGGACGGGCCGTCGATAATCAGTACAGCTTCACCTAAAAGCTTTCTAGA
CCAT

BS02817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RA 2172 CG17367-PA 1..2172 17..2188 10860 100 Plus
Lnk-RB 2172 CG17367-PB 1..2172 17..2188 10860 100 Plus
Lnk-RC 2172 CG17367-PC 1..2172 17..2188 10860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RA 3113 CG17367-RA 474..2645 17..2188 10860 100 Plus
Lnk-RB 2918 CG17367-RB 279..2450 17..2188 10860 100 Plus
Lnk-RC 3287 CG17367-RC 648..2819 17..2188 10860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25890716..25892034 516..1834 6595 100 Plus
3R 32079331 3R 25889778..25890279 17..518 2510 100 Plus
3R 32079331 3R 25892445..25892802 1831..2188 1775 99.7 Plus
Blast to na_te.dros performed 2014-11-27 15:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8580..8697 2085..2201 119 56.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..202 78..146 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9232 78..146 118 66.7 Plus

BS02817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:51 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 1..2172 17..2188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:35 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 399..2568 17..2186 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:53 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 648..2817 17..2186 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:51 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 399..2570 17..2188 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:30 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 648..2817 17..2186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:30 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25889778..25890278 17..517 100 -> Plus
3R 25890718..25892034 518..1834 100 -> Plus
3R 25892449..25892800 1835..2186 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:53 Download gff for BS02817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21715500..21716000 17..517 100 -> Plus
arm_3R 21716440..21717756 518..1834 100 -> Plus
arm_3R 21718171..21718522 1835..2186 100   Plus

BS02817.pep Sequence

Translation from 16 to 2187

> BS02817.pep
MGGNSTGANTSAFSAGGYIGPTSASSHHSLGTSSAAAAAAAGSDLIPAPI
GTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLPPEEA
RNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLL
SKSLLRRLSFKGLRKGKAFFHKNSDDLDGSGGSGKQSKTKLAKIVVECRK
EGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYMLEFYTPHKATKPRS
GVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLA
TIRYCMRTPPTQQPTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQR
GSNGNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPD
IPVRPHRGEQRLSASSNFDGIEGTENDADVADLTAEMSVFPWFHGTLTRS
EAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKG
QCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT
TAANHDSGQLNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGG
HPSPRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTV
HGSPPPAQNFLDQPHLRASNASLQAAAHHQAGSSGNRHPSDGGSNSGGAG
GGSGSSGGAECTGRAVDNQYSFT*

BS02817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-PA 723 CG17367-PA 1..723 1..723 3807 100 Plus
Lnk-PB 723 CG17367-PB 1..723 1..723 3807 100 Plus
Lnk-PC 723 CG17367-PC 1..723 1..723 3807 100 Plus
Lnk-PD 728 CG17367-PD 1..728 1..723 3791 99.3 Plus
Lnk-PF 608 CG17367-PF 1..606 1..606 3178 100 Plus