Clone Sequence Records
BS02821.3prime Sequence
719 bp (653 high quality bases) assembled on 2005-11-30
> BS02821.3prime
ATGGTCTAGAAAGCTTCTAGAAGCGATCCTTCGAGGTGGCACTGTACTCC
AGCTCGTTCAGGTTCTGGATCTCCTGTAGCTCCTGGAACTTTTCGTGGTC
CCGAATGTGGGCGTAGTTAGCAGACAGGCACATCAGGTAGTGGACCAGAC
TGAGCAGCACCAAAAGGGTGGACAGAGTGGCCAATATAAACATCACCTCG
GCGTTCTCAACACCGTCTTTGCAGAATGCCTTTATCTCGTACTTTTCGCA
GACCTTCATGTCCTCCAGTTTCGTGTTTGGCGGGAACATAAAATGGAATT
GCGTCAGATCAATGCAGCTTTGAGAGTGCTCAACACTGGTGCACATGTTC
CAGAACATGGTGTAGATGAAGGTAACCACTACCAGGAAACAAAGGATCAG
ACTCCACACAAAGTTTAGCAGGTAGGTTATCCCCATAAGGACGGCGCACG
AGATTCGCCCACCCACTCGCGACCGCCACGCCCGGTAAACCTTGTATCTG
GTGGCTCCGGTGGCCAGAAATCCGACGAACAGGATCATAAATCCGAGGGC
GGCCATGCCCGCTCCAATTATTACGAAAATCATTTGCACAGCTTCGATCC
ATATCAGGCGTAGGTGGAAAACCTGGTCAACCATTATAACGGTGAGAGAG
GCTCCTCGGTACATGGTGAAGCAGAAGATTCCCTACTCCCAGGAGACACA
TCAGAGTGGCTATCAGGGT
BS02821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7540-PA | 945 | M6-RA | 280..945 | 682..17 | 3330 | 100 | Minus |
CG7540-PB | 945 | M6-RB | 280..945 | 682..17 | 3330 | 100 | Minus |
CG7540-PA | 945 | M6-RA | 244..281 | 719..682 | 190 | 100 | Minus |
CG7540-PB | 945 | M6-RB | 244..281 | 719..682 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 867..1568 | 719..17 | 3490 | 99.9 | Minus |
M6-RE | 2157 | CG7540-RE | 654..1355 | 719..17 | 3490 | 99.9 | Minus |
M6-RD | 1961 | CG7540-RD | 458..1159 | 719..17 | 3490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 600..295 | 1530 | 100 | Minus |
3L | 28110227 | 3L | 21511670..21511947 | 294..17 | 1390 | 100 | Minus |
3L | 28110227 | 3L | 21511132..21511251 | 719..599 | 555 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:28:02 has no hits.
BS02821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:03 Download gff for
BS02821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7540-PB | 244..945 | 17..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:38:57 Download gff for
BS02821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RD | 458..1159 | 17..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:32 Download gff for
BS02821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RD | 458..1159 | 17..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:32 Download gff for
BS02821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21511132..21511250 | 600..719 | 99 | -> | Minus |
3L | 21511309..21511613 | 295..599 | 100 | -> | Minus |
3L | 21511670..21511947 | 17..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:38:57 Download gff for
BS02821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21504232..21504350 | 600..719 | 99 | -> | Minus |
arm_3L | 21504409..21504713 | 295..599 | 100 | -> | Minus |
arm_3L | 21504770..21505047 | 17..294 | 100 | | Minus |
BS02821.5prime Sequence
788 bp (719 high quality bases) assembled on 2005-11-30
> BS02821.5prime
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGT
BS02821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7540-PA | 945 | M6-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
CG7540-PB | 945 | M6-RB | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 624..1395 | 17..788 | 3860 | 100 | Plus |
M6-RC | 2174 | CG7540-RC | 428..1199 | 17..788 | 3860 | 100 | Plus |
M6-RB | 1945 | CG7540-RB | 199..970 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 378..683 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 21510079..21510281 | 17..219 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 21511089..21511251 | 217..379 | 815 | 100 | Plus |
3L | 28110227 | 3L | 21511670..21511774 | 684..788 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:27:31 has no hits.
BS02821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:04 Download gff for
BS02821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7540-PB | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:35:10 Download gff for
BS02821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..970 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:04 Download gff for
BS02821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..970 | 9..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:04 Download gff for
BS02821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21510075..21510280 | 9..218 | 98 | -> | Plus |
3L | 21511091..21511250 | 219..378 | 100 | -> | Plus |
3L | 21511309..21511613 | 379..683 | 100 | -> | Plus |
3L | 21511670..21511774 | 684..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:35:10 Download gff for
BS02821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21503175..21503380 | 9..218 | 98 | -> | Plus |
arm_3L | 21504191..21504350 | 219..378 | 100 | -> | Plus |
arm_3L | 21504409..21504713 | 379..683 | 100 | -> | Plus |
arm_3L | 21504770..21504874 | 684..788 | 100 | | Plus |
BS02821.complete Sequence
977 bp (977 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634680
> BS02821.complete
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCA
CTCTGTCCACCCTTTTGGTGCTGCTCAGTCTGGTCCACTACCTGATGTGC
CTGTCTGCTAACTACGCCCACATTCGGGACCACGAAAAGTTCCAGGAGCT
ACAGGAGATCCAGAACCTGAACGAGCTGGAGTACAGTGCCACCTCGAAGG
ATCGCTTCTAGAAGCTTTCTAGACCAT
BS02821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 1107 | CG7540-PF | 163..1107 | 17..961 | 4725 | 100 | Plus |
M6-RC | 960 | CG7540-PC | 16..960 | 17..961 | 4725 | 100 | Plus |
M6-RB | 945 | CG7540-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 624..1568 | 17..961 | 4725 | 100 | Plus |
M6-RC | 2174 | CG7540-RC | 428..1372 | 17..961 | 4725 | 100 | Plus |
M6-RB | 1945 | CG7540-RB | 199..1143 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 378..683 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 21511670..21511947 | 684..961 | 1390 | 100 | Plus |
3L | 28110227 | 3L | 21510079..21510281 | 17..219 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 21511089..21511251 | 217..379 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:10 has no hits.
BS02821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:41 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:08 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..1143 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 199..1143 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:41 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..1143 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:32 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 199..1143 | 17..961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:32 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21511091..21511250 | 219..378 | 100 | -> | Plus |
3L | 21511309..21511613 | 379..683 | 100 | -> | Plus |
3L | 21511670..21511947 | 684..961 | 100 | | Plus |
3L | 21510079..21510280 | 17..218 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for
BS02821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21504191..21504350 | 219..378 | 100 | -> | Plus |
arm_3L | 21504409..21504713 | 379..683 | 100 | -> | Plus |
arm_3L | 21503179..21503380 | 17..218 | 100 | -> | Plus |
arm_3L | 21504770..21505047 | 684..961 | 100 | | Plus |
BS02821.pep Sequence
Translation from 16 to 960
> BS02821.pep
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRF*
BS02821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-PB | 314 | CG7540-PB | 1..314 | 1..314 | 1659 | 100 | Plus |
M6-PC | 319 | CG7540-PC | 6..319 | 1..314 | 1659 | 100 | Plus |
M6-PF | 368 | CG7540-PF | 55..368 | 1..314 | 1659 | 100 | Plus |
M6-PE | 297 | CG7540-PE | 44..297 | 61..314 | 1305 | 98 | Plus |
M6-PD | 248 | CG7540-PD | 2..248 | 68..314 | 1295 | 100 | Plus |