Clone BS02821 Report

Search the DGRC for BS02821

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptM6-RB
Protein status:BS02821.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02821.3prime Sequence

719 bp (653 high quality bases) assembled on 2005-11-30

> BS02821.3prime
ATGGTCTAGAAAGCTTCTAGAAGCGATCCTTCGAGGTGGCACTGTACTCC
AGCTCGTTCAGGTTCTGGATCTCCTGTAGCTCCTGGAACTTTTCGTGGTC
CCGAATGTGGGCGTAGTTAGCAGACAGGCACATCAGGTAGTGGACCAGAC
TGAGCAGCACCAAAAGGGTGGACAGAGTGGCCAATATAAACATCACCTCG
GCGTTCTCAACACCGTCTTTGCAGAATGCCTTTATCTCGTACTTTTCGCA
GACCTTCATGTCCTCCAGTTTCGTGTTTGGCGGGAACATAAAATGGAATT
GCGTCAGATCAATGCAGCTTTGAGAGTGCTCAACACTGGTGCACATGTTC
CAGAACATGGTGTAGATGAAGGTAACCACTACCAGGAAACAAAGGATCAG
ACTCCACACAAAGTTTAGCAGGTAGGTTATCCCCATAAGGACGGCGCACG
AGATTCGCCCACCCACTCGCGACCGCCACGCCCGGTAAACCTTGTATCTG
GTGGCTCCGGTGGCCAGAAATCCGACGAACAGGATCATAAATCCGAGGGC
GGCCATGCCCGCTCCAATTATTACGAAAATCATTTGCACAGCTTCGATCC
ATATCAGGCGTAGGTGGAAAACCTGGTCAACCATTATAACGGTGAGAGAG
GCTCCTCGGTACATGGTGAAGCAGAAGATTCCCTACTCCCAGGAGACACA
TCAGAGTGGCTATCAGGGT

BS02821.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7540-PA 945 M6-RA 280..945 682..17 3330 100 Minus
CG7540-PB 945 M6-RB 280..945 682..17 3330 100 Minus
CG7540-PA 945 M6-RA 244..281 719..682 190 100 Minus
CG7540-PB 945 M6-RB 244..281 719..682 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 867..1568 719..17 3490 99.9 Minus
M6-RE 2157 CG7540-RE 654..1355 719..17 3490 99.9 Minus
M6-RD 1961 CG7540-RD 458..1159 719..17 3490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 600..295 1530 100 Minus
3L 28110227 3L 21511670..21511947 294..17 1390 100 Minus
3L 28110227 3L 21511132..21511251 719..599 555 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:28:02 has no hits.

BS02821.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:03 Download gff for BS02821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7540-PB 244..945 17..719 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:38:57 Download gff for BS02821.3prime
Subject Subject Range Query Range Percent Splice Strand
M6-RD 458..1159 17..719 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:32 Download gff for BS02821.3prime
Subject Subject Range Query Range Percent Splice Strand
M6-RD 458..1159 17..719 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:32 Download gff for BS02821.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21511132..21511250 600..719 99 -> Minus
3L 21511309..21511613 295..599 100 -> Minus
3L 21511670..21511947 17..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:38:57 Download gff for BS02821.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21504232..21504350 600..719 99 -> Minus
arm_3L 21504409..21504713 295..599 100 -> Minus
arm_3L 21504770..21505047 17..294 100   Minus

BS02821.5prime Sequence

788 bp (719 high quality bases) assembled on 2005-11-30

> BS02821.5prime
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGT

BS02821.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7540-PA 945 M6-RA 1..772 17..788 3860 100 Plus
CG7540-PB 945 M6-RB 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 624..1395 17..788 3860 100 Plus
M6-RC 2174 CG7540-RC 428..1199 17..788 3860 100 Plus
M6-RB 1945 CG7540-RB 199..970 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 378..683 1530 100 Plus
3L 28110227 3L 21510079..21510281 17..219 1015 100 Plus
3L 28110227 3L 21511089..21511251 217..379 815 100 Plus
3L 28110227 3L 21511670..21511774 684..788 525 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:27:31 has no hits.

BS02821.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:04 Download gff for BS02821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7540-PB 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:35:10 Download gff for BS02821.5prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..970 9..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:04 Download gff for BS02821.5prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..970 9..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:04 Download gff for BS02821.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21510075..21510280 9..218 98 -> Plus
3L 21511091..21511250 219..378 100 -> Plus
3L 21511309..21511613 379..683 100 -> Plus
3L 21511670..21511774 684..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:35:10 Download gff for BS02821.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21503175..21503380 9..218 98 -> Plus
arm_3L 21504191..21504350 219..378 100 -> Plus
arm_3L 21504409..21504713 379..683 100 -> Plus
arm_3L 21504770..21504874 684..788 100   Plus

BS02821.complete Sequence

977 bp (977 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634680

> BS02821.complete
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCA
CTCTGTCCACCCTTTTGGTGCTGCTCAGTCTGGTCCACTACCTGATGTGC
CTGTCTGCTAACTACGCCCACATTCGGGACCACGAAAAGTTCCAGGAGCT
ACAGGAGATCCAGAACCTGAACGAGCTGGAGTACAGTGCCACCTCGAAGG
ATCGCTTCTAGAAGCTTTCTAGACCAT

BS02821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 1107 CG7540-PF 163..1107 17..961 4725 100 Plus
M6-RC 960 CG7540-PC 16..960 17..961 4725 100 Plus
M6-RB 945 CG7540-PB 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 624..1568 17..961 4725 100 Plus
M6-RC 2174 CG7540-RC 428..1372 17..961 4725 100 Plus
M6-RB 1945 CG7540-RB 199..1143 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 378..683 1530 100 Plus
3L 28110227 3L 21511670..21511947 684..961 1390 100 Plus
3L 28110227 3L 21510079..21510281 17..219 1015 100 Plus
3L 28110227 3L 21511089..21511251 217..379 815 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:52:10 has no hits.

BS02821.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:41 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..945 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:08 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..1143 9..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 199..1143 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:41 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..1143 9..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:32 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 199..1143 17..961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:32 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21511091..21511250 219..378 100 -> Plus
3L 21511309..21511613 379..683 100 -> Plus
3L 21511670..21511947 684..961 100   Plus
3L 21510079..21510280 17..218 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for BS02821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21504191..21504350 219..378 100 -> Plus
arm_3L 21504409..21504713 379..683 100 -> Plus
arm_3L 21503179..21503380 17..218 100 -> Plus
arm_3L 21504770..21505047 684..961 100   Plus

BS02821.pep Sequence

Translation from 16 to 960

> BS02821.pep
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRF*

BS02821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
M6-PB 314 CG7540-PB 1..314 1..314 1659 100 Plus
M6-PC 319 CG7540-PC 6..319 1..314 1659 100 Plus
M6-PF 368 CG7540-PF 55..368 1..314 1659 100 Plus
M6-PE 297 CG7540-PE 44..297 61..314 1305 98 Plus
M6-PD 248 CG7540-PD 2..248 68..314 1295 100 Plus