Clone BS02823 Report

Search the DGRC for BS02823

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptfng-RA
Protein status:BS02823.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02823.3prime Sequence

845 bp (700 high quality bases) assembled on 2005-11-30

> BS02823.3prime
ATGGTCTAGAAAGCTTTCATCTGGGCGGGCAGAAGCTGAAGTAGGGGAAA
AGCTGGCAGTGCAGGGAGTAGAAGCGCTTGGGATCGGTTTTCATATCGAA
GCCGTCCACCTTGATCACGTTCCACTGGTTTTTCATGTGGGCATAGCTGA
AGGACACCTGGTCCTGGAACGTATCCTGGCGTATGAACTCCATGGGCTCC
AAATGCGAGTGGAAGTTGTCCACCACGGTTAGAGGAACTTTCAGAAGGTG
TTCAATAATAAAACCCATTGTGACATCATCCGGAAAACGTATCTTGTCGC
CAATGCTGATAAACTTGCCACCACCTGCTATGGGTAGCATTTTTAAAGTC
AGGGCTCGACTGAGGCAGAAGCCAGCGCCGCCAGTGGCGAACCAGAAGGT
TATCTTCTTGTTTGTTGTCGTGTTCTTGCTGTCCAAGTGGATCTCCAGCG
GCGACGAGATGCTCGGCTTGCCCAGATACCAATCCACACTGGGGCTATAC
TCGTCCAGCAGTTTGACCAGCCTCGGCACATTGACATAGTTGTCATCGTC
GAAGTGACAGAACCACTTTTTGCCACTCTCCAGGAAGACATCCAATTCAG
CGGACATTTTGCAGCAAAGCGCCTTGCGAAAATGGCCCTGTGAGCATTTC
GTGTTGATGAGATGGCCCTTTGTCTTCTCCTGGTAGTAGTGATCATCGGT
GTCCGTGAAGAACCAGGTCTGATCGCGGGCCAATTGGAACCAGGTCTTGA
TGATCAACGCCAGCCCGGTGTCGTGATAGTTCTTCGTCGTCTTACGCTGA
TGAAAATGTCATCCAACTCGGTGACCGGCGGCTGTGGTGTCGCCC

BS02823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10580-PA 1239 fng-RA 463..1239 793..17 3860 99.8 Minus
CG10580-PA 1239 fng-RA 411..463 844..792 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
fng-RA 1959 CG10580-RA 622..1451 844..16 4110 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20926399..20926636 16..253 1190 100 Plus
3L 28110227 3L 20926699..20926873 253..427 875 100 Plus
3L 28110227 3L 20927709..20927847 428..566 695 100 Plus
3L 28110227 3L 20943564..20943690 719..844 570 98.4 Plus
3L 28110227 3L 20935411..20935515 565..669 525 100 Plus
3L 28110227 3L 20936666..20936717 670..721 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:30:24 has no hits.

BS02823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:47 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
fng-PA 410..1239 17..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:08 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10580-PA 410..1239 17..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:23:33 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
fng-RA 621..1453 12..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:20 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
fng-RA 621..1453 12..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:20 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20926397..20926635 12..252 99 <- Plus
3L 20926699..20926873 253..427 100 <- Plus
3L 20927709..20927847 428..566 100 <- Plus
3L 20935413..20935515 567..669 100 <- Plus
3L 20936666..20936714 670..718 100 <- Plus
3L 20943564..20943690 719..845 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:23:33 Download gff for BS02823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20928513..20928615 567..669 100 <- Plus
arm_3L 20929766..20929814 670..718 100 <- Plus
arm_3L 20936664..20936790 719..845 97   Plus
arm_3L 20919497..20919735 12..252 99 <- Plus
arm_3L 20919799..20919973 253..427 100 <- Plus
arm_3L 20920809..20920947 428..566 100 <- Plus

BS02823.5prime Sequence

806 bp (747 high quality bases) assembled on 2005-11-30

> BS02823.5prime
GAAGTTATCAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAAC
GTTTTAAGCGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTAT
ATGACCCTACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGT
GCCGCACAGCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATC
GCGACCAGCTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCG
GGGGCTGGAGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGA
TATACGCAGCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGG
CCACGCTGCTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTC
CGCGATCTGTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCAC
CGAGTTGGATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACG
ACACCCGGCTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGAT
CAGACCTGGTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGAC
AAAGGGCCATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGG
CGCTTTGCTGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGC
AAAAAGTGGTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAG
GCTGGTCAAACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGG
GCAAGC

BS02823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10580-PA 1239 fng-RA 1..790 17..806 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
fng-RA 1959 CG10580-RA 212..1001 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20943564..20943968 553..149 2025 100 Minus
3L 28110227 3L 20949167..20949301 151..17 675 100 Minus
3L 28110227 3L 20935411..20935515 707..603 525 100 Minus
3L 28110227 3L 20927747..20927847 806..706 505 100 Minus
3L 28110227 3L 20936666..20936717 602..551 260 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:57:18 has no hits.

BS02823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:48 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
fng-PA 1..790 17..806 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:09 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10580-PA 1..790 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:20 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
fng-RA 209..1001 13..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:48 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
fng-RA 209..1001 13..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:48 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20927747..20927847 706..806 100 <- Minus
3L 20935413..20935515 603..705 100 <- Minus
3L 20936666..20936714 554..602 100 <- Minus
3L 20943564..20943968 149..553 100 <- Minus
3L 20949170..20949304 13..148 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:20 Download gff for BS02823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20920847..20920947 706..806 100 <- Minus
arm_3L 20928513..20928615 603..705 100 <- Minus
arm_3L 20929766..20929814 554..602 100 <- Minus
arm_3L 20936664..20937068 149..553 100 <- Minus
arm_3L 20942270..20942404 13..148 98   Minus

BS02823.complete Sequence

1271 bp (1271 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634681

> BS02823.complete
GAAGTTATCAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAAC
GTTTTAAGCGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTAT
ATGACCCTACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGT
GCCGCACAGCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATC
GCGACCAGCTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCG
GGGGCTGGAGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGA
TATACGCAGCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGG
CCACGCTGCTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTC
CGCGATCTGTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCAC
CGAGTTGGATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACG
ACACCCGGCTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGAT
CAGACCTGGTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGAC
AAAGGGCCATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGG
CGCTTTGCTGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGC
AAAAAGTGGTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAG
GCTGGTCAAACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGG
GCAAGCCGAGCATCTCGTCGCCGCTGGAGATCCACTTGGACAGCAAGAAC
ACGACAACAAACAAGAAGATAACCTTCTGGTTCGCCACTGGCGGCGCTGG
CTTCTGCCTCAGTCGAGCCCTGACTTTAAAAATGCTACCCATAGCAGGTG
GTGGCAAGTTTATCAGCATTGGCGACAAGATACGTTTTCCGGATGATGTC
ACAATGGGTTTTATTATTGAACACCTTCTGAAAGTTCCTCTAACCGTGGT
GGACAACTTCCACTCGCATTTGGAGCCCATGGAGTTCATACGCCAGGATA
CGTTCCAGGACCAGGTGTCCTTCAGCTATGCCCACATGAAAAACCAGTGG
AACGTGATCAAGGTGGACGGCTTCGATATGAAAACCGATCCCAAGCGCTT
CTACTCCCTGCACTGCCAGCTTTTCCCCTACTTCAGCTTCTGCCCGCCCA
GATGAAAGCTTTCTAGACCAT

BS02823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
fng-RA 1239 CG10580-PA 1..1239 17..1255 6195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
fng-RA 1959 CG10580-RA 212..1451 17..1256 6200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20943564..20943968 553..149 2025 100 Minus
3L 28110227 3L 20926399..20926636 1256..1019 1190 100 Minus
3L 28110227 3L 20926699..20926873 1019..845 875 100 Minus
3L 28110227 3L 20927709..20927847 844..706 695 100 Minus
3L 28110227 3L 20949167..20949301 151..17 675 100 Minus
3L 28110227 3L 20935411..20935515 707..603 525 100 Minus
3L 28110227 3L 20936666..20936717 602..551 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:48:34 has no hits.

BS02823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:17 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 17..1255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:55 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 209..1446 17..1254 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:14 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 212..1449 17..1254 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:17 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 206..1450 13..1260 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:22 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 212..1449 17..1254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:22 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20926401..20926635 1020..1254 100 <- Minus
3L 20926699..20926873 845..1019 100 <- Minus
3L 20927709..20927847 706..844 100 <- Minus
3L 20935413..20935515 603..705 100 <- Minus
3L 20936666..20936714 554..602 100 <- Minus
3L 20943564..20943968 149..553 100 <- Minus
3L 20949170..20949301 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:14 Download gff for BS02823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20919501..20919735 1020..1254 100 <- Minus
arm_3L 20919799..20919973 845..1019 100 <- Minus
arm_3L 20920809..20920947 706..844 100 <- Minus
arm_3L 20928513..20928615 603..705 100 <- Minus
arm_3L 20929766..20929814 554..602 100 <- Minus
arm_3L 20936664..20937068 149..553 100 <- Minus
arm_3L 20942270..20942401 17..148 100   Minus

BS02823.pep Sequence

Translation from 16 to 1254

> BS02823.pep
MMSLTVLSPPQRFKRILQAMMLAVAVVYMTLLLYQSAYGYPGIQVPHSQV
DALASEAVTTHRDQLLQDYVQSSTPTQPGAGAPAASPTTVIIRKDIRSFN
FSDIEVSERPTATLLTELARRSRNGELLRDLSQRAVTATPQPPVTELDDI
FISVKTTKNYHDTRLALIIKTWFQLARDQTWFFTDTDDHYYQEKTKGHLI
NTKCSQGHFRKALCCKMSAELDVFLESGKKWFCHFDDDNYVNVPRLVKLL
DEYSPSVDWYLGKPSISSPLEIHLDSKNTTTNKKITFWFATGGAGFCLSR
ALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFHS
HLEPMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHC
QLFPYFSFCPPR*

BS02823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
fng-PA 412 CG10580-PA 1..412 1..412 2182 100 Plus