Clone Sequence Records
BS02823.3prime Sequence
845 bp (700 high quality bases) assembled on 2005-11-30
> BS02823.3prime
ATGGTCTAGAAAGCTTTCATCTGGGCGGGCAGAAGCTGAAGTAGGGGAAA
AGCTGGCAGTGCAGGGAGTAGAAGCGCTTGGGATCGGTTTTCATATCGAA
GCCGTCCACCTTGATCACGTTCCACTGGTTTTTCATGTGGGCATAGCTGA
AGGACACCTGGTCCTGGAACGTATCCTGGCGTATGAACTCCATGGGCTCC
AAATGCGAGTGGAAGTTGTCCACCACGGTTAGAGGAACTTTCAGAAGGTG
TTCAATAATAAAACCCATTGTGACATCATCCGGAAAACGTATCTTGTCGC
CAATGCTGATAAACTTGCCACCACCTGCTATGGGTAGCATTTTTAAAGTC
AGGGCTCGACTGAGGCAGAAGCCAGCGCCGCCAGTGGCGAACCAGAAGGT
TATCTTCTTGTTTGTTGTCGTGTTCTTGCTGTCCAAGTGGATCTCCAGCG
GCGACGAGATGCTCGGCTTGCCCAGATACCAATCCACACTGGGGCTATAC
TCGTCCAGCAGTTTGACCAGCCTCGGCACATTGACATAGTTGTCATCGTC
GAAGTGACAGAACCACTTTTTGCCACTCTCCAGGAAGACATCCAATTCAG
CGGACATTTTGCAGCAAAGCGCCTTGCGAAAATGGCCCTGTGAGCATTTC
GTGTTGATGAGATGGCCCTTTGTCTTCTCCTGGTAGTAGTGATCATCGGT
GTCCGTGAAGAACCAGGTCTGATCGCGGGCCAATTGGAACCAGGTCTTGA
TGATCAACGCCAGCCCGGTGTCGTGATAGTTCTTCGTCGTCTTACGCTGA
TGAAAATGTCATCCAACTCGGTGACCGGCGGCTGTGGTGTCGCCC
BS02823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10580-PA | 1239 | fng-RA | 463..1239 | 793..17 | 3860 | 99.8 | Minus |
CG10580-PA | 1239 | fng-RA | 411..463 | 844..792 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fng-RA | 1959 | CG10580-RA | 622..1451 | 844..16 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20926399..20926636 | 16..253 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 20926699..20926873 | 253..427 | 875 | 100 | Plus |
3L | 28110227 | 3L | 20927709..20927847 | 428..566 | 695 | 100 | Plus |
3L | 28110227 | 3L | 20943564..20943690 | 719..844 | 570 | 98.4 | Plus |
3L | 28110227 | 3L | 20935411..20935515 | 565..669 | 525 | 100 | Plus |
3L | 28110227 | 3L | 20936666..20936717 | 670..721 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:30:24 has no hits.
BS02823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:47 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-PA | 410..1239 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:08 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10580-PA | 410..1239 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:23:33 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 621..1453 | 12..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:20 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 621..1453 | 12..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:20 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20926397..20926635 | 12..252 | 99 | <- | Plus |
3L | 20926699..20926873 | 253..427 | 100 | <- | Plus |
3L | 20927709..20927847 | 428..566 | 100 | <- | Plus |
3L | 20935413..20935515 | 567..669 | 100 | <- | Plus |
3L | 20936666..20936714 | 670..718 | 100 | <- | Plus |
3L | 20943564..20943690 | 719..845 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:23:33 Download gff for
BS02823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20928513..20928615 | 567..669 | 100 | <- | Plus |
arm_3L | 20929766..20929814 | 670..718 | 100 | <- | Plus |
arm_3L | 20936664..20936790 | 719..845 | 97 | | Plus |
arm_3L | 20919497..20919735 | 12..252 | 99 | <- | Plus |
arm_3L | 20919799..20919973 | 253..427 | 100 | <- | Plus |
arm_3L | 20920809..20920947 | 428..566 | 100 | <- | Plus |
BS02823.5prime Sequence
806 bp (747 high quality bases) assembled on 2005-11-30
> BS02823.5prime
GAAGTTATCAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAAC
GTTTTAAGCGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTAT
ATGACCCTACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGT
GCCGCACAGCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATC
GCGACCAGCTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCG
GGGGCTGGAGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGA
TATACGCAGCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGG
CCACGCTGCTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTC
CGCGATCTGTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCAC
CGAGTTGGATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACG
ACACCCGGCTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGAT
CAGACCTGGTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGAC
AAAGGGCCATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGG
CGCTTTGCTGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGC
AAAAAGTGGTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAG
GCTGGTCAAACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGG
GCAAGC
BS02823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10580-PA | 1239 | fng-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fng-RA | 1959 | CG10580-RA | 212..1001 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20943564..20943968 | 553..149 | 2025 | 100 | Minus |
3L | 28110227 | 3L | 20949167..20949301 | 151..17 | 675 | 100 | Minus |
3L | 28110227 | 3L | 20935411..20935515 | 707..603 | 525 | 100 | Minus |
3L | 28110227 | 3L | 20927747..20927847 | 806..706 | 505 | 100 | Minus |
3L | 28110227 | 3L | 20936666..20936717 | 602..551 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:57:18 has no hits.
BS02823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:18:48 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:09 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10580-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:20 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 209..1001 | 13..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:48 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 209..1001 | 13..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:48 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20927747..20927847 | 706..806 | 100 | <- | Minus |
3L | 20935413..20935515 | 603..705 | 100 | <- | Minus |
3L | 20936666..20936714 | 554..602 | 100 | <- | Minus |
3L | 20943564..20943968 | 149..553 | 100 | <- | Minus |
3L | 20949170..20949304 | 13..148 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:20 Download gff for
BS02823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20920847..20920947 | 706..806 | 100 | <- | Minus |
arm_3L | 20928513..20928615 | 603..705 | 100 | <- | Minus |
arm_3L | 20929766..20929814 | 554..602 | 100 | <- | Minus |
arm_3L | 20936664..20937068 | 149..553 | 100 | <- | Minus |
arm_3L | 20942270..20942404 | 13..148 | 98 | | Minus |
BS02823.complete Sequence
1271 bp (1271 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634681
> BS02823.complete
GAAGTTATCAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAAC
GTTTTAAGCGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTAT
ATGACCCTACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGT
GCCGCACAGCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATC
GCGACCAGCTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCG
GGGGCTGGAGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGA
TATACGCAGCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGG
CCACGCTGCTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTC
CGCGATCTGTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCAC
CGAGTTGGATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACG
ACACCCGGCTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGAT
CAGACCTGGTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGAC
AAAGGGCCATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGG
CGCTTTGCTGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGC
AAAAAGTGGTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAG
GCTGGTCAAACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGG
GCAAGCCGAGCATCTCGTCGCCGCTGGAGATCCACTTGGACAGCAAGAAC
ACGACAACAAACAAGAAGATAACCTTCTGGTTCGCCACTGGCGGCGCTGG
CTTCTGCCTCAGTCGAGCCCTGACTTTAAAAATGCTACCCATAGCAGGTG
GTGGCAAGTTTATCAGCATTGGCGACAAGATACGTTTTCCGGATGATGTC
ACAATGGGTTTTATTATTGAACACCTTCTGAAAGTTCCTCTAACCGTGGT
GGACAACTTCCACTCGCATTTGGAGCCCATGGAGTTCATACGCCAGGATA
CGTTCCAGGACCAGGTGTCCTTCAGCTATGCCCACATGAAAAACCAGTGG
AACGTGATCAAGGTGGACGGCTTCGATATGAAAACCGATCCCAAGCGCTT
CTACTCCCTGCACTGCCAGCTTTTCCCCTACTTCAGCTTCTGCCCGCCCA
GATGAAAGCTTTCTAGACCAT
BS02823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fng-RA | 1239 | CG10580-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fng-RA | 1959 | CG10580-RA | 212..1451 | 17..1256 | 6200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20943564..20943968 | 553..149 | 2025 | 100 | Minus |
3L | 28110227 | 3L | 20926399..20926636 | 1256..1019 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 20926699..20926873 | 1019..845 | 875 | 100 | Minus |
3L | 28110227 | 3L | 20927709..20927847 | 844..706 | 695 | 100 | Minus |
3L | 28110227 | 3L | 20949167..20949301 | 151..17 | 675 | 100 | Minus |
3L | 28110227 | 3L | 20935411..20935515 | 707..603 | 525 | 100 | Minus |
3L | 28110227 | 3L | 20936666..20936717 | 602..551 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:48:34 has no hits.
BS02823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:17 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 1..1239 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:55 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 209..1446 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:14 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 212..1449 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:17 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 206..1450 | 13..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:22 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fng-RA | 212..1449 | 17..1254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:22 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20926401..20926635 | 1020..1254 | 100 | <- | Minus |
3L | 20926699..20926873 | 845..1019 | 100 | <- | Minus |
3L | 20927709..20927847 | 706..844 | 100 | <- | Minus |
3L | 20935413..20935515 | 603..705 | 100 | <- | Minus |
3L | 20936666..20936714 | 554..602 | 100 | <- | Minus |
3L | 20943564..20943968 | 149..553 | 100 | <- | Minus |
3L | 20949170..20949301 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:14 Download gff for
BS02823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20919501..20919735 | 1020..1254 | 100 | <- | Minus |
arm_3L | 20919799..20919973 | 845..1019 | 100 | <- | Minus |
arm_3L | 20920809..20920947 | 706..844 | 100 | <- | Minus |
arm_3L | 20928513..20928615 | 603..705 | 100 | <- | Minus |
arm_3L | 20929766..20929814 | 554..602 | 100 | <- | Minus |
arm_3L | 20936664..20937068 | 149..553 | 100 | <- | Minus |
arm_3L | 20942270..20942401 | 17..148 | 100 | | Minus |
BS02823.pep Sequence
Translation from 16 to 1254
> BS02823.pep
MMSLTVLSPPQRFKRILQAMMLAVAVVYMTLLLYQSAYGYPGIQVPHSQV
DALASEAVTTHRDQLLQDYVQSSTPTQPGAGAPAASPTTVIIRKDIRSFN
FSDIEVSERPTATLLTELARRSRNGELLRDLSQRAVTATPQPPVTELDDI
FISVKTTKNYHDTRLALIIKTWFQLARDQTWFFTDTDDHYYQEKTKGHLI
NTKCSQGHFRKALCCKMSAELDVFLESGKKWFCHFDDDNYVNVPRLVKLL
DEYSPSVDWYLGKPSISSPLEIHLDSKNTTTNKKITFWFATGGAGFCLSR
ALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFHS
HLEPMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHC
QLFPYFSFCPPR*
BS02823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fng-PA | 412 | CG10580-PA | 1..412 | 1..412 | 2182 | 100 | Plus |