Clone Sequence Records
BS02832.3prime Sequence
501 bp (500 high quality bases) assembled on 2005-11-30
> BS02832.3prime
ATGGTCTAGAAAGCTTCTAGCATTTCTCTTCGCGCAAAAGACGGAAGAGC
TCAGCGGGTTGGGCGCCGGAGACCTGCAGGGCGCAGTTGAAGTTCTCCAG
CAGGCAGGAGTTGGCCAACTCGGCACGATACTTTCCATTGGTAATGCACA
CCGGCTGGTAGATCATCGAGCAGGGCTTGAAGCATTCCTTGACCTCCAGC
TTGAAGTTGCCCAACTTCTCGTGCAGATTCTCGACGAACTCGGAGCTGCA
CCAGGCGGCATCGGTGGCAGCATAGGCCTGCACGCTATTCCTTTCGCGGC
GACAGTTGTGGGACAAAAGATTGCAGGTGCTAGCAAACTCCTTGAAGTTC
TGGCCATCAGTTCCGCATACTGGCTTGTAGATACTGGGGCAAAAAGTTGG
ACAAGCGGTATCGTTGGTGGACACTGTATTTCCGTATACACATGCCACCA
ATGCAAGGCAGCAAAGGGTCAAAGTTTGGCTCATCATGTCGACTGATAAC
T
BS02832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8342-PA | 471 | m1-RA | 1..471 | 487..17 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..567 | 487..16 | 2360 | 100 | Minus |
Kaz-m1-RA | 670 | CG8342-RA | 96..567 | 487..16 | 2360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015349 | 277..16 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 26014816..26015026 | 487..277 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:08:33 has no hits.
BS02832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:24 Download gff for
BS02832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8342-PA | 1..471 | 17..487 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:09 Download gff for
BS02832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 88..571 | 9..492 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:32 Download gff for
BS02832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 91..574 | 9..492 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:32 Download gff for
BS02832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26014811..26015026 | 277..492 | 99 | -> | Minus |
3R | 26015089..26015356 | 9..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:09 Download gff for
BS02832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840533..21840748 | 277..492 | 99 | -> | Minus |
arm_3R | 21840811..21841078 | 9..276 | 98 | | Minus |
BS02832.5prime Sequence
501 bp (500 high quality bases) assembled on 2005-11-30
> BS02832.5prime
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCTAGAAGCTTTCTAGAC
C
BS02832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8342-PA | 471 | m1-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..567 | 17..488 | 2360 | 100 | Plus |
Kaz-m1-RA | 670 | CG8342-RA | 96..567 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015349 | 227..488 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 26014816..26015026 | 17..227 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:54:30 has no hits.
BS02832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:19:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:25 Download gff for
BS02832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8342-PA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:05:27 Download gff for
BS02832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 88..571 | 12..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:43 Download gff for
BS02832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 91..574 | 12..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:43 Download gff for
BS02832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26014811..26015026 | 12..227 | 99 | -> | Plus |
3R | 26015089..26015356 | 228..495 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:05:27 Download gff for
BS02832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840533..21840748 | 12..227 | 99 | -> | Plus |
arm_3R | 21840811..21841078 | 228..495 | 98 | | Plus |
BS02832.complete Sequence
503 bp (503 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634682
> BS02832.complete
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCTAGAAGCTTTCTAGAC
CAT
BS02832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 471 | CG8342-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
Kaz-m1-RA | 471 | CG8342-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..567 | 17..488 | 2360 | 100 | Plus |
Kaz-m1-RA | 670 | CG8342-RA | 96..567 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015349 | 227..488 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 26014816..26015026 | 17..227 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:38:04 has no hits.
BS02832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:24 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:04 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 87..570 | 12..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:44 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 93..563 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:24 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 87..570 | 12..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:40 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 96..566 | 17..487 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:40 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26014816..26015026 | 17..227 | 100 | -> | Plus |
3R | 26015089..26015348 | 228..487 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:44 Download gff for
BS02832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840538..21840748 | 17..227 | 100 | -> | Plus |
arm_3R | 21840811..21841070 | 228..487 | 100 | | Plus |
BS02832.pep Sequence
Translation from 16 to 486
> BS02832.pep
MMSQTLTLCCLALVACVYGNTVSTNDTACPTFCPSIYKPVCGTDGQNFKE
FASTCNLLSHNCRRERNSVQAYAATDAAWCSSEFVENLHEKLGNFKLEVK
ECFKPCSMIYQPVCITNGKYRAELANSCLLENFNCALQVSGAQPAELFRL
LREEKC*
BS02832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-PB | 156 | CG8342-PB | 1..156 | 1..156 | 850 | 100 | Plus |
Kaz-m1-PA | 156 | CG8342-PA | 1..156 | 1..156 | 850 | 100 | Plus |