Clone BS02832 Report

Search the DGRC for BS02832

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptKaz-m1-RA
Protein status:BS02832.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02832.3prime Sequence

501 bp (500 high quality bases) assembled on 2005-11-30

> BS02832.3prime
ATGGTCTAGAAAGCTTCTAGCATTTCTCTTCGCGCAAAAGACGGAAGAGC
TCAGCGGGTTGGGCGCCGGAGACCTGCAGGGCGCAGTTGAAGTTCTCCAG
CAGGCAGGAGTTGGCCAACTCGGCACGATACTTTCCATTGGTAATGCACA
CCGGCTGGTAGATCATCGAGCAGGGCTTGAAGCATTCCTTGACCTCCAGC
TTGAAGTTGCCCAACTTCTCGTGCAGATTCTCGACGAACTCGGAGCTGCA
CCAGGCGGCATCGGTGGCAGCATAGGCCTGCACGCTATTCCTTTCGCGGC
GACAGTTGTGGGACAAAAGATTGCAGGTGCTAGCAAACTCCTTGAAGTTC
TGGCCATCAGTTCCGCATACTGGCTTGTAGATACTGGGGCAAAAAGTTGG
ACAAGCGGTATCGTTGGTGGACACTGTATTTCCGTATACACATGCCACCA
ATGCAAGGCAGCAAAGGGTCAAAGTTTGGCTCATCATGTCGACTGATAAC
T

BS02832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8342-PA 471 m1-RA 1..471 487..17 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..567 487..16 2360 100 Minus
Kaz-m1-RA 670 CG8342-RA 96..567 487..16 2360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015349 277..16 1310 100 Minus
3R 32079331 3R 26014816..26015026 487..277 1055 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:08:33 has no hits.

BS02832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:18:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:24 Download gff for BS02832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8342-PA 1..471 17..487 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:09 Download gff for BS02832.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 88..571 9..492 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:32 Download gff for BS02832.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 91..574 9..492 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:32 Download gff for BS02832.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26014811..26015026 277..492 99 -> Minus
3R 26015089..26015356 9..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:09 Download gff for BS02832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840533..21840748 277..492 99 -> Minus
arm_3R 21840811..21841078 9..276 98   Minus

BS02832.5prime Sequence

501 bp (500 high quality bases) assembled on 2005-11-30

> BS02832.5prime
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCTAGAAGCTTTCTAGAC
C

BS02832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8342-PA 471 m1-RA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..567 17..488 2360 100 Plus
Kaz-m1-RA 670 CG8342-RA 96..567 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015349 227..488 1310 100 Plus
3R 32079331 3R 26014816..26015026 17..227 1055 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:54:30 has no hits.

BS02832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:19:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:25 Download gff for BS02832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8342-PA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:05:27 Download gff for BS02832.5prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 88..571 12..495 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:43 Download gff for BS02832.5prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 91..574 12..495 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:43 Download gff for BS02832.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26014811..26015026 12..227 99 -> Plus
3R 26015089..26015356 228..495 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:05:27 Download gff for BS02832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840533..21840748 12..227 99 -> Plus
arm_3R 21840811..21841078 228..495 98   Plus

BS02832.complete Sequence

503 bp (503 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634682

> BS02832.complete
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCTAGAAGCTTTCTAGAC
CAT

BS02832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 471 CG8342-PB 1..471 17..487 2355 100 Plus
Kaz-m1-RA 471 CG8342-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..567 17..488 2360 100 Plus
Kaz-m1-RA 670 CG8342-RA 96..567 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015349 227..488 1310 100 Plus
3R 32079331 3R 26014816..26015026 17..227 1055 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:38:04 has no hits.

BS02832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:24 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:04 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 87..570 12..495 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:44 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 93..563 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:24 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 87..570 12..495 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:40 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 96..566 17..487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:40 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26014816..26015026 17..227 100 -> Plus
3R 26015089..26015348 228..487 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:44 Download gff for BS02832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840538..21840748 17..227 100 -> Plus
arm_3R 21840811..21841070 228..487 100   Plus

BS02832.pep Sequence

Translation from 16 to 486

> BS02832.pep
MMSQTLTLCCLALVACVYGNTVSTNDTACPTFCPSIYKPVCGTDGQNFKE
FASTCNLLSHNCRRERNSVQAYAATDAAWCSSEFVENLHEKLGNFKLEVK
ECFKPCSMIYQPVCITNGKYRAELANSCLLENFNCALQVSGAQPAELFRL
LREEKC*

BS02832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-PB 156 CG8342-PB 1..156 1..156 850 100 Plus
Kaz-m1-PA 156 CG8342-PA 1..156 1..156 850 100 Plus