Clone Sequence Records
BS02836.3prime Sequence
756 bp (720 high quality bases) assembled on 2005-11-30
> BS02836.3prime
ATGGTCTAGAAAGCTTTTACAATAATGTCGTTTGCAACCCGAGCTGAATG
AGTAATAAAAGACTTAACGTAAAGTCTGTAAAAAATTGTGAACTTCCCGA
ACGAAGTTCTTCATTATCAGTGAACAAATAATTCAAACAAGCTGCCGGTG
GCTTCACGTACGCTGTAAACTCGGGATAGCGAATTATTTCCGAAGGAATT
GATAATGAATCCTTGGATACGCGACAAAACGTCATATGTGTTCCGGTTAT
AAATGCTTGTTCAACACGTTTCGTAAAGAGAGGATCATGCCAAGGCAACT
GATTTAAATGCGATAGAAATGTGCGATCGTGAAATTCGGCTGGGTCGGAT
ATAACAAGCTTGTTTAACAAAGACTCCTGGTAGATGACGTCTTCTTTGGA
CGTTTTTCCGGAATTTGGTTTGTTTGTCGCATTCTTCGCCTGTTTACTGT
AGTCGGTGTAGTCACTGTTGTAGAGAAACATGTTCTCGACATCGGTCATA
TTTAAGGAATAGAATTGGTACACACGGAACATCTCGAAAAACTCACGCAC
TGGTGTCATACTATAACATCCGGACATCTCAATCTTTGGGTAATAAGTAA
TAAAGGTGAGACACATTTCCTCCTTCGTGGAATAGCCCCCGAATGTGGGT
CGTTTTCTGTACTTTGTCTCATAGGAACAGTCTGTAATTAGGTAATCCCC
TGGCAATACGACCGTTTCATTGGCAAGCTGATGGACTTTTTGGTGCCTGT
AATCGT
BS02836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PA | 2097 | CG5235-RA | 1358..2097 | 756..17 | 3700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 1498..2239 | 756..15 | 3710 | 100 | Minus |
| CG5235-RA | 2711 | CG5235-RA | 1498..2239 | 756..15 | 3710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16088099..16088840 | 15..756 | 3710 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:08:19 has no hits.
BS02836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:05 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1358..2097 | 17..756 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:30 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1358..2097 | 17..756 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:06 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 1498..2239 | 15..756 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:31 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 1498..2239 | 15..756 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:31 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16088099..16088840 | 15..756 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:06 Download gff for
BS02836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16081199..16081940 | 15..756 | 100 | | Plus |
BS02836.5prime Sequence
832 bp (762 high quality bases) assembled on 2005-11-30
> BS02836.5prime
GAAGTTATCAGTCGACATGTCCGTTCAAGACGTACTATGGATCGTACTCA
CGGTGCAGTTGAGTTTTGGTCTTGCGTATTTTGAAAACAATCAAAGGACG
CAGGACTATGATGTCGATAAAAATGGTTCTGTACACCACAAAAACTGGGT
GCGTAACGAAATGATGGACAGCTTGGGCTTGTACTGGCTCAAATGGTGGA
TAAACGCCAACGAAAATAGCATTTACTTTGAAGTAACTGTTCACACACGA
GGCTTTGCCGGCCTGGGTTTCTCCAAGGATGGCCGGCTGGCCAGAGCGGA
TATGGTTTTGATGTGGGTGGATGACGCCACAGGACATCCGAACGTCTTGG
ACTGCCATGGGGCGCTGCATCCTTCAAGCGGACCGCCGCTGCAGGACGAT
ACTCAAAACTACGATGTCCTAGATGGCAAACAAAATGGGACGCACACAAT
CCTGAAGTTTAAACGCAAAATTGAGACCTGTGACCCATTCGATATTCCAC
TCTCCGCTGATACGTTTAAGGTACTGTGGTCCATTGGGGAAAATGATCCT
ATTCATGGAAACTTGGATTGGCAAGGTCAGAGCAGAGGCGTGAAAGCTTT
GCAATTGTTTTCGCCAATGTTTACGAAAAATAGTCACTCGATCGAAGGCA
TCCAAAAATGGGACATAACTGTGAACAACGTAACAATTGATCGGTCAATG
GATACACTATACTGGTGTAAAATAGTGCGACTACCAGAGTTAACTGGCAA
ACAGCATATAATTGGTTATGAGCCGCTGCTGTCTGGTAAATACGAGAGGG
AATGTTGTTCACCACATGACCCTGTTTGAGTG
BS02836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PA | 2097 | CG5235-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
| CG5235-PA | 2097 | CG5235-RA | 782..815 | 799..832 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..955 | 16..832 | 4060 | 99.9 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..955 | 16..832 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16089763..16090253 | 506..16 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 16089383..16089708 | 832..506 | 1585 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:26:57 has no hits.
BS02836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:06 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1..815 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:32 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1..815 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:35:01 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..955 | 13..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:47 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..955 | 13..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:47 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16089383..16089708 | 506..832 | 99 | <- | Minus |
| 3L | 16089764..16090255 | 16..505 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:35:01 Download gff for
BS02836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16082483..16082808 | 506..832 | 99 | <- | Minus |
| arm_3L | 16082864..16083355 | 16..505 | 99 | -> | Minus |
BS02836.complete Sequence
2129 bp assembled on 2008-01-02
GenBank Submission: FJ634683
> BS02836.complete
GAAGTTATCAGTCGACATGTCCGTTCAAGACGTACTATGGATCGTACTCA
CGGTGCAGTTGAGTTTTGGTCTTGCGTATTTTGAAAACAATCAAAGGACG
CAGGACTATGATGTCGATAAAAATGGTTCTGTACACCACAAAAACTGGGT
GCGTAACGAAATGATGGACAGCTTGGGCTTGTACTGGCTCAAATGGTGGA
TAAACGCCAACGAAAATAGCATTTACTTTGAAGTAACTGTTCACACACGA
GGCTTTGCCGGCCTGGGTTTCTCCAAGGATGGCCGGCTGGCCAGAGCGGA
TATGGTTTTGATGTGGGTGGATGACGCCACAGGACATCCGAACGTCTTGG
ACTGCCATGGGGCGCTGCATCCTTCAAGCGGACCGCCGCTGCAGGACGAT
ACTCAAAACTACGATGTCCTAGATGGCAAACAAAATGGGACGCACACAAT
CCTGAAGTTTAAACGCAAAATTGAGACCTGTGACCCATTCGATATTCCAC
TCTCCGCTGATACGTTTAAGGTACTGTGGTCCATTGGGGAAAATGATCCT
ATTCATGGAAACTTGGATTGGCAAGGTCAGAGCAGAGGCGTGAAAGCTTT
GCAATTGTTTTCGCCAATGTTTACGAAAAATAGTCACTCGATCGAAGGCA
TCCAAAAATGGGACATAACTGTGAACAACGTAACAATTGATCGGTCAATG
GATACACTATACTGGTGTAAAATAGTGCGACTACCAGAGTTAACTGGCAA
ACAGCATATAATTGGTTATGAGCCGCTGCTGTCTGGTAAATACGAGAGGA
ATGTTGTTCACCACATGACCCTGTTTGAGTGTCAGTCCAAGATATACTCT
GGATCCGATCCTTCGTCCTGGGACCTTTGGGTTAGGAGTGCCGGCACAGT
GTGCAACAGCAACCTACTGACGCCACGCGACTGGGATTCGTGCTCTACGC
CAGTTGCAGTTTGGTCCTTGGGATCTGATGGACAGTTTCTACCTCCCCAC
GCAGGGATCCCAATGGGCGGAGCATCTGGAGTTAGCTATTATATGCTGGA
AATACACTACGATAATCCCGATGGAAAGGAATCGGTGGATCACTCCGGTT
TTCGAATACACTACACACCCAATCTGCGAACCTACGATTCCGGAATTCTA
ATAAGTGGTGTTTCCATTTCGGAAACGCAACTCATTCCGCCTGGTCAAAA
GAAGTATCGATCCGTCGGCATTTGTGGGCCGTCTTGTTCAAGCGTCATGT
TCCCAAAGGATGGTATTAAAATAATATCCGGAACGTTGCACTCACATCAA
GCTGGTCGCACAATTAGTCTTCGACATGTTCGATCTGGTAAGGAGTTGAA
TCCGATCATTGTTGACGAAAACTACGATTACAGGCACCAAAAAGTCCATC
AGCTTGCCAATGAAACGGTCGTATTGCCAGGGGATTACCTAATTACAGAC
TGTTCCTATGAGACAAAGTACAGAAAACGACCCACATTCGGGGGCTATTC
CACGAAGGAGGAAATGTGTCTCACCTTTATTACTTATTACCCAAAGATTG
AGATGTCCGGATGTTATAGTATGACACCAGTGCGTGAGTTTTTCGAGATG
TTCCGTGTGTACCAATTCTATTCCTTAAATATGACCGATGTCGAGAACAT
GTTTCTCTACAACAGTGACTACACCGACTACAGTAAACAGGCGAAGAATG
CGACAAACAAACCAAATTCCGGAAAAACGTCCAAAGAAGACGTCATCTAC
CAGGAGTCTTTGTTAAACAAGCTTGTTATATCCGACCCAGCCGAATTTCA
CGATCGCACATTTCTATCGCATTTAAATCAGTTGCCTTGGCATGATCCTC
TCTTTACGAAACGTGTTGAACAAGCATTTATAACCGGAACACATATGACG
TTTTGTCGCGTATCCAAGGATTCATTATCAATTCCTTCGGAAATAATTCG
CTATCCCGAGTTTACAGCGTACGTGAAGCCACCGGCAGCTTGTTTGAATT
ATTTGTTCACTGATAATGAAGAACTTCGTTCGGGAAGTTCACAATTTTTT
ACAGACTTTACGTTAAGTCTTTTATTACTCATTCAGCTCGGGTTGCAAAC
GACATTATTGTAAAAGCTTTCTAGACCAT
BS02836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2097 | CG5235-PB | 1..2097 | 17..2113 | 10485 | 100 | Plus |
| CG5235-RA | 2097 | CG5235-PA | 1..2097 | 17..2113 | 10485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..2239 | 16..2115 | 10500 | 100 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..2239 | 16..2115 | 10500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16088099..16089708 | 2115..506 | 8050 | 100 | Minus |
| 3L | 28110227 | 3L | 16089763..16090253 | 506..16 | 2455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:42 has no hits.
BS02836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:54 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 136..2230 | 17..2111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:55 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 141..2235 | 17..2111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:55 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 132..2234 | 13..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:58 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 141..2235 | 17..2111 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:58 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16088103..16089708 | 506..2111 | 100 | <- | Minus |
| 3L | 16089764..16090252 | 17..505 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:55 Download gff for
BS02836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16081203..16082808 | 506..2111 | 100 | <- | Minus |
| arm_3L | 16082864..16083352 | 17..505 | 100 | | Minus |
BS02836.pep Sequence
Translation from 16 to 2112
> BS02836.pep
MSVQDVLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMM
DSLGLYWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMW
VDDATGHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKR
KIETCDPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSP
MFTKNSHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIG
YEPLLSGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNL
LTPRDWDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDN
PDGKESVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSV
GICGPSCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVD
ENYDYRHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEM
CLTFITYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNS
DYTDYSKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFL
SHLNQLPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFT
AYVKPPAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLL*
BS02836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PB | 698 | CG5235-PB | 1..698 | 1..698 | 3770 | 100 | Plus |
| CG5235-PA | 698 | CG5235-PA | 1..698 | 1..698 | 3770 | 100 | Plus |
| olf413-PC | 760 | CG12673-PC | 123..584 | 61..519 | 674 | 33.2 | Plus |
| olf413-PB | 760 | CG12673-PB | 123..584 | 61..519 | 674 | 33.2 | Plus |
| Tbh-PC | 670 | CG1543-PC | 136..567 | 83..532 | 538 | 32.2 | Plus |
