Clone BS02838 Report

Search the DGRC for BS02838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptMkk4-RA
Protein status:BS02838.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02838.3prime Sequence

575 bp (258 high quality bases) assembled on 2005-11-30

> BS02838.3prime
ATGGACTAGAAAGCTTTCAACTCTCCGCCTGCTGATTGGCCGTAAACTGC
GTAATGCCGTCTTTCTCCATCGACTCCAGTATATCAGCCACATACACGGT
AACATCAGTGTGGCTCGTCTCGCCACGACGTATGAAGGGCATCTCCAGCA
GACGGCTATACTTGGGCCGATCGCTCTCCTTTTTAATTAGGCAAGTATTG
ACAAAGTCCACAAACTCTTCGGAAAACTCCATGCCGATATAGGATGTCAA
AAGTCGCGGCGGTTCGCCTTGCACAACCTGGCACAACTGCTCGAAAACAG
AGTCCCATTTACGATAGGGGAAATTACCAGGCGCCACCTCCATTAATGTG
ATGCCCAATGACCAAACATCGCTTCGTACATCGTAGCCCTTGGCACGCTC
TGGATCAATGCGCTCCGGCGCCATGTAGGGCCTGCAGCCCGCATCCTTGG
TCTTGGCAATAGAGTCGACCAGCTGACCCTAAATACCAAAATCGCACAGC
TTTATGTCTCCGCAACGGTGCAACAGAATGTTGCTCGGTTGCACATCCCG
ATGGATAATCTTTAGCTCCTTCCTT

BS02838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9738-PA 1275 Mkk4-RA 722..1273 570..19 2535 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mkk4-RC 4110 CG9738-RC 1007..1558 570..19 2625 98.4 Minus
Mkk4-RB 2525 CG9738-RB 1007..1558 570..19 2625 98.4 Minus
Mkk4-RA 2698 CG9738-RA 1007..1558 570..19 2625 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8648724..8648897 19..192 840 98.9 Plus
3R 32079331 3R 8649478..8649629 419..570 715 98 Plus
3R 32079331 3R 8649277..8649420 276..419 690 98.6 Plus
3R 32079331 3R 1031175..1031303 406..278 450 89.9 Minus
3R 32079331 3R 8648962..8649049 192..279 410 97.7 Plus
Blast to na_te.dros performed 2015-02-10 23:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 756..854 191..94 105 57.6 Minus

BS02838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:07 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-PA 718..1275 16..575 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:33 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9738-PA 718..1275 16..575 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:37:38 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 1003..1560 16..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:33 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 1003..1560 16..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:33 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8649478..8649633 419..575 97   Plus
3R 8648722..8648896 16..191 98 <- Plus
3R 8648962..8649047 192..277 97 <- Plus
3R 8649279..8649419 278..418 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:37:38 Download gff for BS02838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4474444..4474618 16..191 98 <- Plus
arm_3R 4474684..4474769 192..277 97 <- Plus
arm_3R 4475001..4475141 278..418 98 <- Plus
arm_3R 4475200..4475355 419..575 97   Plus

BS02838.5prime Sequence

683 bp (621 high quality bases) assembled on 2005-11-29

> BS02838.5prime
GAAGTTATCAGTCGACATGGCCGAACGACCGAAAAATTTGTTTGCAACCG
GATCCAGTCGCTCCCGCAATCCCCCGGATCAGCTAAGCCTGAATAATCTT
AGCATACGCCATCCGCCCTCGTCCACGTCGTCCACTTCTTCGGGATCCAC
CTCCTCGGGCTCAAGTTCCTCATCACAGCACAACCATGTGACCCGCTGTT
TTGGTGCCCAGCAGCCACAGCAAACCCCGCCGGTGGCCAGCAGTCAAGTG
CCACCGGTGCCGGCAGCATCGAGCAGCAGCGCTGCCGATCGTCACCGGGA
GCGAATTCGCCAGCAGGCCTGTGGCAAGCTACAGTTTGGTGAGGGCGGCG
CTAATACACACACATTTACTTCAGACGATCTCGAGGATGAGGGCGAAATT
GGACGCGGTGCATTTGGGGCAGTCAACAAGATGACCTTTAAGAAATTGGA
CAAGGTGATGGCCGTCAAGCGCATTCGATCCACCGTAGACGAGAAGGAAC
AGAAGCAGCTGCTCATGGATCTCGAGGTGGTCATGAAGTCCAACGAGTGC
ATTTACATTGTTCAGTTCTATGGGGCGCTTTTCAAGGAGGGTGACTGCTG
GATTTGTATGGAGCTGATGGACACCTCTTTGGACAAGTTTTACAAATACA
TCTACGAAAAGCAGCAGCGCCACATTCCAGAGT

BS02838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9738-PA 1275 Mkk4-RA 1..667 17..683 3310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mkk4-RC 4110 CG9738-RC 286..952 17..683 3320 99.9 Plus
Mkk4-RB 2525 CG9738-RB 286..952 17..683 3320 99.9 Plus
Mkk4-RA 2698 CG9738-RA 286..952 17..683 3320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8649684..8650319 683..48 3165 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 06:36:25 has no hits.

BS02838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:09 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:34 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9738-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:17 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 278..952 9..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:48 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 278..952 9..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:48 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8649684..8650319 48..683 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:17 Download gff for BS02838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4475406..4476041 48..683 99 <- Minus

BS02838.complete Sequence

1307 bp (1307 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634684

> BS02838.complete
GAAGTTATCAGTCGACATGGCCGAACGACCGAAAAATTTGTTTGCAACCG
GATCCAGTCGCTCCCGCAATCCCCCGGATCAGCTAAGCCTGAATAATCTT
AGCATACGCCATCCGCCCTCGTCCACGTCGTCCACTTCTTCGGGATCCAC
CTCCTCGGGCTCAAGTTCCTCATCACAGCACAACCATGTGACCCGCTGTT
TTGGTGCCCAGCAGCCACAGCAAACCCCGCCGGTGGCCAGCAGTCAAGTG
CCACCGGTGCCGGCAGCATCGAGCAGCAGCGCTGCCGATCGTCACCGGGA
GCGAATTCGCCAGCAGGCCTGTGGCAAGCTACAGTTTGGTGAGGGCGGCG
CTAATACACACACATTTACTTCAGACGATCTCGAGGATGAGGGCGAAATT
GGACGCGGTGCATTTGGGGCAGTCAACAAGATGACCTTTAAGAAATTGGA
CAAGGTGATGGCCGTCAAGCGCATTCGATCCACCGTAGACGAGAAGGAAC
AGAAGCAGCTGCTCATGGATCTCGAGGTGGTCATGAAGTCCAACGAGTGC
ATTTACATTGTTCAGTTCTATGGGGCGCTTTTCAAGGAGGGTGACTGCTG
GATTTGTATGGAGCTGATGGACACCTCTTTGGACAAGTTTTACAAGTACA
TCTACGAAAAGCAGCAGCGCCACATTCCAGAGTCTATACTGGCTAAGATA
ACAGTGGCCACGGTCAATGCGCTGAACTATTTGAAGGAGGAGCTAAAGAT
TATCCATCGGGATGTGAAACCGAGCAACATTCTGTTGCACCGTCGCGGAG
ACATAAAGCTGTGCGATTTTGGTATTTCGGGTCAGCTGGTCGACTCTATT
GCCAAGACCAAGGATGCGGGCTGCAGGCCCTACATGGCGCCGGAGCGCAT
TGATCCAGAACGTGCCAAGGGCTACGATGTACGAAGCGATGTTTGGTCAT
TGGGCATCACATTAATGGAGGTGGCGACTGGTAATTTCCCCTATCGTAAA
TGGGACTCTGTTTTCGAGCAGTTGTGCCAGGTTGTGCAAGGCGAACCGCC
GCGACTTTTGACATCCTATAACGGCATGGAGTTTTCCAAAGAGTTTGTGG
ACTTTGTCAATACTTGCCTAATTAAAAAGGAGAGCGATCGACCCAAGTAT
AGCCGTCTGCTGGAGATGCCCTTCATACGTCGTGGCGAGACGAGCCACAC
TGATGTTGCCGTGTATGTGGCTGATATACTGGAGTCGATGGAGAAAGACG
GCATTACGCAGTTTACGGCCAATCAGCAGGCGGAGAGTTAAAAGCTTTCT
AGACCAT

BS02838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mkk4-RC 1275 CG9738-PC 1..1275 17..1291 6375 100 Plus
Mkk4-RB 1275 CG9738-PB 1..1275 17..1291 6375 100 Plus
Mkk4-RA 1275 CG9738-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mkk4-RC 4110 CG9738-RC 286..1560 17..1291 6375 100 Plus
Mkk4-RB 2525 CG9738-RB 286..1560 17..1291 6375 100 Plus
Mkk4-RA 2698 CG9738-RA 286..1560 17..1291 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8649478..8650319 889..48 4210 100 Minus
3R 32079331 3R 8648722..8648897 1291..1116 880 100 Minus
3R 32079331 3R 8649277..8649420 1032..889 720 100 Minus
3R 32079331 3R 1031175..1031303 902..1030 480 91.5 Plus
3R 32079331 3R 8648962..8649049 1116..1029 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:07:30 has no hits.

BS02838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:01 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:35 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RB 276..1558 9..1291 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:37 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 286..1558 17..1289 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:01 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 276..1558 9..1291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:02 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
Mkk4-RA 286..1558 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:02 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8648724..8648896 1117..1289 100 <- Minus
3R 8648962..8649047 1031..1116 100 <- Minus
3R 8649279..8649419 890..1030 100 <- Minus
3R 8649478..8650319 48..889 100 <- Minus
3R 8650481..8650511 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:37 Download gff for BS02838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4474446..4474618 1117..1289 100 <- Minus
arm_3R 4474684..4474769 1031..1116 100 <- Minus
arm_3R 4475001..4475141 890..1030 100 <- Minus
arm_3R 4475200..4476041 48..889 100 <- Minus
arm_3R 4476203..4476233 17..47 100   Minus

BS02838.pep Sequence

Translation from 16 to 1290

> BS02838.pep
MAERPKNLFATGSSRSRNPPDQLSLNNLSIRHPPSSTSSTSSGSTSSGSS
SSSQHNHVTRCFGAQQPQQTPPVASSQVPPVPAASSSSAADRHRERIRQQ
ACGKLQFGEGGANTHTFTSDDLEDEGEIGRGAFGAVNKMTFKKLDKVMAV
KRIRSTVDEKEQKQLLMDLEVVMKSNECIYIVQFYGALFKEGDCWICMEL
MDTSLDKFYKYIYEKQQRHIPESILAKITVATVNALNYLKEELKIIHRDV
KPSNILLHRRGDIKLCDFGISGQLVDSIAKTKDAGCRPYMAPERIDPERA
KGYDVRSDVWSLGITLMEVATGNFPYRKWDSVFEQLCQVVQGEPPRLLTS
YNGMEFSKEFVDFVNTCLIKKESDRPKYSRLLEMPFIRRGETSHTDVAVY
VADILESMEKDGITQFTANQQAES*

BS02838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mkk4-PC 424 CG9738-PC 1..424 1..424 2201 100 Plus
Mkk4-PB 424 CG9738-PB 1..424 1..424 2201 100 Plus
Mkk4-PA 424 CG9738-PA 1..424 1..424 2201 100 Plus
lic-PA 334 CG12244-PA 35..326 111..406 812 54.2 Plus
hep-PE 492 CG4353-PE 87..476 33..407 744 43.4 Plus