Clone BS02839 Report

Search the DGRC for BS02839

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:28
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptwgn-RA
Protein status:BS02839.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS02839.3prime Sequence

739 bp (661 high quality bases) assembled on 2005-11-30

> BS02839.3prime
ATGGTCTAGAAAGCTTTCAGCCCTTCAGGCCGGAACAGCCGCGGACGCCC
AGGCCCACGCCCATGCCGCCCAATCCAGCGTTGCTCTCCTCAATGTAGAC
ATTGCCGGGCTGCAGGGTCTTCAGGATTCGTCGCTCCTGATGCTTGCCGC
GTTTCTCAGGCAGCAGCACGTGTTGTGGCTGGAAGATTCCCGACTGCGTC
GTTGCTGGATGCGTCGTCGCTGCGGAGGCGGGCAGTCCTCGCAAGGCGTC
CGCGTTGCCGATGAAGAAGGTGCCTCCGTCCAGGCTCTGCACCTCCGCCA
GCTTGGCCATCAGCTTGGTTGACAGCTCCTCCACATCCTGGTCCAGGCGA
CGCTCCATACGTCGCCACTGGCGCATGTGGTGGATGAGGATGCAGGCGGC
CACCGAGAAGAAGACCAGGCATGTGAGCACGGCCACGTAAAGAACGCCAG
TCTGCCAGTCAAGGACCCAGGCGGCGGCCGCCTCCTCGTGCAGCTGCTGC
AGTTGCTCGTGGGTCAGGTGCTGCAGTGGGGCATTGTGCTCGAAGTGCTC
ATACTCGGAGGACTTTCGGCGCTCCTTCCAGTTGGGTTCGGTCTTGGCCA
AGACAACCCAGTCGATCTTGAGGTCGTATATGGAACCGCAGATGGTGTCC
GTGTGTAGCTGGCAGGGTCGCAGCGGTATCATCTCGCCCTGGCAGCGGGT
GCACGGGGTGCAGCGATCTTCGCTGCGAGTCCCACCAAT

BS02839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6531-PA 1032 wgn-RA 330..1032 719..17 3490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 811..1532 739..17 3575 99.7 Minus
wgn-RB 2594 CG6531-RB 811..1213 739..336 1980 99.5 Minus
wgn-RB 2594 CG6531-RB 1391..1711 337..17 1605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628474..18628710 337..573 1185 100 Plus
X 23542271 X 18625638..18625818 157..337 905 100 Plus
X 23542271 X 18628775..18628941 572..739 775 98.8 Plus
X 23542271 X 18624925..18625065 17..157 705 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:17:32 has no hits.

BS02839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:10 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-PA 311..1032 17..739 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:36 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6531-PA 311..1032 17..739 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:23:45 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 811..1534 13..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:27 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 811..1534 13..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:27 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18625638..18625817 157..336 100 <- Plus
X 18624923..18625064 13..156 98 <- Plus
X 18628474..18628708 337..571 100 <- Plus
X 18628775..18628941 572..739 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:23:45 Download gff for BS02839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18518956..18519097 13..156 98 <- Plus
arm_X 18519671..18519850 157..336 100 <- Plus
arm_X 18522507..18522741 337..571 100 <- Plus
arm_X 18522808..18522974 572..739 98   Plus

BS02839.5prime Sequence

730 bp (729 high quality bases) assembled on 2005-11-30

> BS02839.5prime
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGAT

BS02839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6531-PA 1032 wgn-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 501..1214 17..730 3570 100 Plus
wgn-RB 2594 CG6531-RB 501..1213 17..729 3565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628775..18629251 493..17 2385 100 Minus
X 23542271 X 18628474..18628710 728..492 1185 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:29:12 has no hits.

BS02839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:10 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:37 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6531-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:34 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1214 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:38 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1214 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:38 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18628472..18628708 494..730 99 <- Minus
X 18628775..18629251 17..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:34 Download gff for BS02839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18522505..18522741 494..730 99 <- Minus
arm_X 18522808..18523284 17..493 100   Minus

BS02839.complete Sequence

1064 bp (1064 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634685

> BS02839.complete
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCATCAGGAGCGACGAATCCTGAAGACCC
TGCAGCCCGGCAATGTCTACATTGAGGAGAGCAACGCTGGATTGGGCGGC
ATGGGCGTGGGCCTGGGCGTCCGCGGCTGTTCCGGCCTGAAGGGCTGAAA
GCTTTCTAGACCAT

BS02839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 1032 CG6531-PA 1..1032 17..1048 5160 100 Plus
wgn-RB 804 CG6531-PB 1..713 17..729 3565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2415 CG6531-RA 501..1532 17..1048 5160 100 Plus
wgn-RB 2594 CG6531-RB 501..1213 17..729 3565 100 Plus
wgn-RB 2594 CG6531-RB 1391..1711 728..1048 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18628775..18629251 493..17 2385 100 Minus
X 23542271 X 18628474..18628710 728..492 1185 100 Minus
X 23542271 X 18625638..18625818 908..728 905 100 Minus
X 23542271 X 18624925..18625065 1048..908 705 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:40:03 has no hits.

BS02839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:03 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 17..1048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:37 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 496..1529 17..1052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:09 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1531 17..1047 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:03 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 496..1529 17..1052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:57 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 501..1531 17..1047 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:57 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
X 18624926..18625064 909..1047 100 <- Minus
X 18625638..18625817 729..908 100 <- Minus
X 18628474..18628708 494..728 100 <- Minus
X 18628775..18629251 17..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:09 Download gff for BS02839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18518959..18519097 909..1047 100 <- Minus
arm_X 18519671..18519850 729..908 100 <- Minus
arm_X 18522507..18522741 494..728 100 <- Minus
arm_X 18522808..18523284 17..493 100   Minus

BS02839.pep Sequence

Translation from 16 to 1047

> BS02839.pep
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKG*

BS02839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-PA 343 CG6531-PA 1..343 1..343 1833 100 Plus
wgn-PB 267 CG6531-PB 1..238 1..238 1297 100 Plus