Clone Sequence Records
BS02839.3prime Sequence
739 bp (661 high quality bases) assembled on 2005-11-30
> BS02839.3prime
ATGGTCTAGAAAGCTTTCAGCCCTTCAGGCCGGAACAGCCGCGGACGCCC
AGGCCCACGCCCATGCCGCCCAATCCAGCGTTGCTCTCCTCAATGTAGAC
ATTGCCGGGCTGCAGGGTCTTCAGGATTCGTCGCTCCTGATGCTTGCCGC
GTTTCTCAGGCAGCAGCACGTGTTGTGGCTGGAAGATTCCCGACTGCGTC
GTTGCTGGATGCGTCGTCGCTGCGGAGGCGGGCAGTCCTCGCAAGGCGTC
CGCGTTGCCGATGAAGAAGGTGCCTCCGTCCAGGCTCTGCACCTCCGCCA
GCTTGGCCATCAGCTTGGTTGACAGCTCCTCCACATCCTGGTCCAGGCGA
CGCTCCATACGTCGCCACTGGCGCATGTGGTGGATGAGGATGCAGGCGGC
CACCGAGAAGAAGACCAGGCATGTGAGCACGGCCACGTAAAGAACGCCAG
TCTGCCAGTCAAGGACCCAGGCGGCGGCCGCCTCCTCGTGCAGCTGCTGC
AGTTGCTCGTGGGTCAGGTGCTGCAGTGGGGCATTGTGCTCGAAGTGCTC
ATACTCGGAGGACTTTCGGCGCTCCTTCCAGTTGGGTTCGGTCTTGGCCA
AGACAACCCAGTCGATCTTGAGGTCGTATATGGAACCGCAGATGGTGTCC
GTGTGTAGCTGGCAGGGTCGCAGCGGTATCATCTCGCCCTGGCAGCGGGT
GCACGGGGTGCAGCGATCTTCGCTGCGAGTCCCACCAAT
BS02839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6531-PA | 1032 | wgn-RA | 330..1032 | 719..17 | 3490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 811..1532 | 739..17 | 3575 | 99.7 | Minus |
wgn-RB | 2594 | CG6531-RB | 811..1213 | 739..336 | 1980 | 99.5 | Minus |
wgn-RB | 2594 | CG6531-RB | 1391..1711 | 337..17 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628474..18628710 | 337..573 | 1185 | 100 | Plus |
X | 23542271 | X | 18625638..18625818 | 157..337 | 905 | 100 | Plus |
X | 23542271 | X | 18628775..18628941 | 572..739 | 775 | 98.8 | Plus |
X | 23542271 | X | 18624925..18625065 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:17:32 has no hits.
BS02839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:10 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-PA | 311..1032 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:36 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6531-PA | 311..1032 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:23:45 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 811..1534 | 13..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:27 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 811..1534 | 13..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:27 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18625638..18625817 | 157..336 | 100 | <- | Plus |
X | 18624923..18625064 | 13..156 | 98 | <- | Plus |
X | 18628474..18628708 | 337..571 | 100 | <- | Plus |
X | 18628775..18628941 | 572..739 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:23:45 Download gff for
BS02839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18518956..18519097 | 13..156 | 98 | <- | Plus |
arm_X | 18519671..18519850 | 157..336 | 100 | <- | Plus |
arm_X | 18522507..18522741 | 337..571 | 100 | <- | Plus |
arm_X | 18522808..18522974 | 572..739 | 98 | | Plus |
BS02839.5prime Sequence
730 bp (729 high quality bases) assembled on 2005-11-30
> BS02839.5prime
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGAT
BS02839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6531-PA | 1032 | wgn-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 501..1214 | 17..730 | 3570 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 501..1213 | 17..729 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628775..18629251 | 493..17 | 2385 | 100 | Minus |
X | 23542271 | X | 18628474..18628710 | 728..492 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:29:12 has no hits.
BS02839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:10 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:37 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6531-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:34 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1214 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:38 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1214 | 17..730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:38 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18628472..18628708 | 494..730 | 99 | <- | Minus |
X | 18628775..18629251 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:34 Download gff for
BS02839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18522505..18522741 | 494..730 | 99 | <- | Minus |
arm_X | 18522808..18523284 | 17..493 | 100 | | Minus |
BS02839.complete Sequence
1064 bp (1064 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634685
> BS02839.complete
GAAGTTATCAGTCGACATGATGCCGCCAAGACTGCCAGGCGGCCATGGAG
GAGCCATGCGTAGTCGGAGCAGCAGCAGTGGCCACCACTTAAACACAACG
TTTCACAAGCGCCGACGGAGGCGACAGCAGCACCACATCGGTGGCAGCCA
CATCAGCATCAGCCACGGCAGTTACCTGGCTCTGCTACTGCTGTCCACCA
CCTGCTCCCTGGTGGCCACCAGCGCCTCCTCTTCATCCTCCGCTGCAAAC
ACAGACATAGCGCCACCAGATCCACCGCCGGTCAGCCAGGTGTCCATCGC
CTCCAGCTCGCCCTGCGCCCCACAGCATTGGTGGGACTCGCAGCGAGATC
GCTGCACACCGTGCACCCGCTGCCAGGGCGAGATGATACCGCTGCGACCC
TGCCAGCTACACACGGACACCATCTGCGGTTCCATATACGACCTCAAGAT
CGACTGGGTTGTCTTGGCCAAGACCGAACCCAACTGGAAGGAGCGCCGAA
AGTCCTCCGAGTATGAGCACTTCGAGCACAATGCCCCACTGCAGCACCTG
ACCCACGAGCAACTGCAGCAGCTGCACGAGGAGGCGGCCGCCGCCTGGGT
CCTTGACTGGCAGACTGGCGTTCTTTACGTGGCCGTGCTCACATGCCTGG
TCTTCTTCTCGGTGGCCGCCTGCATCCTCATCCACCACATGCGCCAGTGG
CGACGTATGGAGCGTCGCCTGGACCAGGATGTGGAGGAGCTGTCAACCAA
GCTGATGGCCAAGCTGGCGGAGGTGCAGAGCCTGGACGGAGGCACCTTCT
TCATCGGCAACGCGGACGCCTTGCGAGGACTGCCCGCCTCCGCAGCGACG
ACGCATCCAGCAACGACGCAGTCGGGAATCTTCCAGCCACAACACGTGCT
GCTGCCTGAGAAACGCGGCAAGCATCAGGAGCGACGAATCCTGAAGACCC
TGCAGCCCGGCAATGTCTACATTGAGGAGAGCAACGCTGGATTGGGCGGC
ATGGGCGTGGGCCTGGGCGTCCGCGGCTGTTCCGGCCTGAAGGGCTGAAA
GCTTTCTAGACCAT
BS02839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 1032 | CG6531-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
wgn-RB | 804 | CG6531-PB | 1..713 | 17..729 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-RA | 2415 | CG6531-RA | 501..1532 | 17..1048 | 5160 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 501..1213 | 17..729 | 3565 | 100 | Plus |
wgn-RB | 2594 | CG6531-RB | 1391..1711 | 728..1048 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18628775..18629251 | 493..17 | 2385 | 100 | Minus |
X | 23542271 | X | 18628474..18628710 | 728..492 | 1185 | 100 | Minus |
X | 23542271 | X | 18625638..18625818 | 908..728 | 905 | 100 | Minus |
X | 23542271 | X | 18624925..18625065 | 1048..908 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:03 has no hits.
BS02839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:03 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 1..1032 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:37 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 496..1529 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:09 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1531 | 17..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:03 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 496..1529 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:57 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wgn-RA | 501..1531 | 17..1047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:57 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18624926..18625064 | 909..1047 | 100 | <- | Minus |
X | 18625638..18625817 | 729..908 | 100 | <- | Minus |
X | 18628474..18628708 | 494..728 | 100 | <- | Minus |
X | 18628775..18629251 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:09 Download gff for
BS02839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18518959..18519097 | 909..1047 | 100 | <- | Minus |
arm_X | 18519671..18519850 | 729..908 | 100 | <- | Minus |
arm_X | 18522507..18522741 | 494..728 | 100 | <- | Minus |
arm_X | 18522808..18523284 | 17..493 | 100 | | Minus |
BS02839.pep Sequence
Translation from 16 to 1047
> BS02839.pep
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKG*
BS02839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wgn-PA | 343 | CG6531-PA | 1..343 | 1..343 | 1833 | 100 | Plus |
wgn-PB | 267 | CG6531-PB | 1..238 | 1..238 | 1297 | 100 | Plus |