Clone Sequence Records
BS02841.3prime Sequence
557 bp (530 high quality bases) assembled on 2005-11-30
> BS02841.3prime
ATGGTCTAGAAAGCTTTTAGTGAGCCGAAACAGACACCTGCCAGACGCGG
ATGGTGTTGTCGGAGTAGCCGGCGAACAGAGTCTGGCCGTCGGTGGACCA
GGCCAGGGACAGGCACTGGGGCTGATCGGCCTTCGACGTGGGCGAAACGA
CCTCGGGGCGCAGCTCCTCAACGGTCTTCTTGCATGCCAGATCCCAGATC
TTGATCGAGGGTCCGTAGGCCACGCACAGCCAGTAGCGGTTGGGCGAGAA
GCACAGGGCGTTGATGATGTCGTTGTGCTCCAGAGTGTACAGGTTCTTGC
CGTCATTGAGGTCCCACAGCAGGGCCTTGGAGTCCTTGCCACCTGAGGTG
CACAGGGAGCCATCGGGCGAGACGGTCACCGTGTTCAGGTAGCCGTTGTG
GCCGTGGTGGTTGTTCTTCAACTTGCAGTTAGCCAAGTTCCAGACCTTGA
CGGTGCGATCCCAGCCGCAGGACACGATGATCGGGTTGGAGTGGTTGGGC
GAGAAGCGCACGCACGACACCCAGTCGGTGTGGCCATCCTCCTGGATGGT
GAACTTG
BS02841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7111-PA | 957 | Rack1-RA | 417..957 | 557..17 | 2705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 494..1034 | 557..17 | 2705 | 100 | Minus |
| Rack1-RB | 1342 | CG7111-RB | 730..1270 | 557..17 | 2705 | 100 | Minus |
| Rack1-RD | 1175 | CG7111-RD | 563..1103 | 557..17 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825701..7826241 | 17..557 | 2705 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:55:07 has no hits.
BS02841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:13 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-PA | 417..957 | 17..557 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:42 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7111-PA | 417..957 | 17..557 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:50 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 494..1040 | 8..557 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:05 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RD | 563..1109 | 8..557 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:05 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825695..7826241 | 8..557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:50 Download gff for
BS02841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825695..7826241 | 8..557 | 99 | | Plus |
BS02841.5prime Sequence
785 bp (687 high quality bases) assembled on 2005-11-29
> BS02841.5prime
GAAGTTATCAGTCGACATGTCCGAGACCCTGCAATTGCGCGGTACCCTCA
TTGGCCACAATGGATGGGTCACCCAGATCGCCACCAACCCCAAGGATCCC
GACACCATAATTTCGGCCTCCCGTGACAAGACCCTGATCGTGTGGAAGCT
GACCCGCGACGAGGACACCAACTACGGCTACCCCCAGAAGCGTCTCTACG
GACACTCGCACTTCATCAGCGACGTGGTGCTCTCCTCCGATGGCAACTAC
GCCCTGTCCGGATCCTGGGATCAGACCCTTCGCCTGTGGGATTTGGCCGC
CGGCAAGACCACCCGTCGCTTCGAGGGACACACTAAGGACGTTTTGTCGG
TTGCCTTCTCGGCCGATAACCGTCAGATCGTGTCCGGCTCTCGGGACAAG
ACCATCAAGCTGTGGAACACCCTGGCTGAGTGCAAGTTCACCATCCAGGA
GGATGGCCACACCGACTGGGTGTCGTGCGTGCGCTTCTCGCCCAACCACT
CCAACCCGATCATCGTGTCCTGCGGCTGGGATCGCACCGTCAAGGTCTGG
AACTTGGCTAACTGCAAGTTGAAGAACAACCACCACGGCCACAACGGCTA
CCTGAACACGGTGACCGTCTCGCCCGATGGCTCCCTGTGCACCTCAGGTG
GCAAGGACTCCAAGGCCCTGCTGTGGGACCTCAATGACGGCAAGAACCTG
TACACTCTGGAGCACAACGACATCATCAACGCCCTGTGCTTCTCGCCCAA
CCGCTACTGGTTGTGCGTGGGCTACGGACCCTCGA
BS02841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7111-PA | 957 | Rack1-RA | 1..769 | 17..785 | 3795 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..846 | 17..785 | 3815 | 99.7 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..915 | 17..785 | 3815 | 99.7 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..846 | 17..785 | 3815 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825889..7826338 | 785..336 | 2220 | 99.6 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 338..125 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7827061..7827169 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:21:58 has no hits.
BS02841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:14 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:42 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7111-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:44 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..845 | 6..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:57 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..845 | 6..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:57 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825890..7826336 | 338..784 | 99 | <- | Minus |
| 2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| 2L | 7827061..7827179 | 6..125 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:19:44 Download gff for
BS02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825890..7826336 | 338..784 | 99 | <- | Minus |
| arm_2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| arm_2L | 7827061..7827179 | 6..125 | 95 | | Minus |
BS02841.complete Sequence
989 bp (989 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634686
> BS02841.complete
GAAGTTATCAGTCGACATGTCCGAGACCCTGCAATTGCGCGGTACCCTCA
TTGGCCACAATGGATGGGTCACCCAGATCGCCACCAACCCCAAGGATCCC
GACACCATAATTTCGGCCTCCCGTGACAAGACCCTGATCGTGTGGAAGCT
GACCCGCGACGAGGACACCAACTACGGCTACCCCCAGAAGCGTCTCTACG
GACACTCGCACTTCATCAGCGACGTGGTGCTCTCCTCCGATGGCAACTAC
GCCCTGTCCGGATCCTGGGATCAGACCCTTCGCCTGTGGGATTTGGCCGC
CGGCAAGACCACCCGTCGCTTCGAGGGACACACTAAGGACGTTTTGTCGG
TTGCCTTCTCGGCCGATAACCGTCAGATCGTGTCCGGCTCTCGGGACAAG
ACCATCAAGCTGTGGAACACCCTGGCTGAGTGCAAGTTCACCATCCAGGA
GGATGGCCACACCGACTGGGTGTCGTGCGTGCGCTTCTCGCCCAACCACT
CCAACCCGATCATCGTGTCCTGCGGCTGGGATCGCACCGTCAAGGTCTGG
AACTTGGCTAACTGCAAGTTGAAGAACAACCACCACGGCCACAACGGCTA
CCTGAACACGGTGACCGTCTCGCCCGATGGCTCCCTGTGCACCTCAGGTG
GCAAGGACTCCAAGGCCCTGCTGTGGGACCTCAATGACGGCAAGAACCTG
TACACTCTGGAGCACAACGACATCATCAACGCCCTGTGCTTCTCGCCCAA
CCGCTACTGGCTGTGCGTGGCCTACGGACCCTCGATCAAGATCTGGGATC
TGGCATGCAAGAAGACCGTTGAGGAGCTGCGCCCCGAGGTCGTTTCGCCC
ACGTCGAAGGCCGATCAGCCCCAGTGCCTGTCCCTGGCCTGGTCCACCGA
CGGCCAGACTCTGTTCGCCGGCTACTCCGACAACACCATCCGCGTCTGGC
AGGTGTCTGTTTCGGCTCACTAAAAGCTTTCTAGACCAT
BS02841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 957 | CG7111-PC | 1..957 | 17..973 | 4785 | 100 | Plus |
| Rack1-RD | 957 | CG7111-PD | 1..957 | 17..973 | 4785 | 100 | Plus |
| Rack1-RA | 957 | CG7111-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..1034 | 17..973 | 4785 | 100 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..1103 | 17..973 | 4785 | 100 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..1034 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825701..7826338 | 973..336 | 3190 | 100 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 338..125 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7827061..7827169 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:18 has no hits.
BS02841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:04 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:38 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 72..1046 | 6..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:33 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 78..1032 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:04 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 72..1046 | 6..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:34 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 78..1032 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:34 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7827061..7827169 | 17..125 | 100 | | Minus |
| 2L | 7825703..7826336 | 338..971 | 100 | <- | Minus |
| 2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:33 Download gff for
BS02841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825703..7826336 | 338..971 | 100 | <- | Minus |
| arm_2L | 7826770..7826981 | 126..337 | 100 | <- | Minus |
| arm_2L | 7827061..7827169 | 17..125 | 100 | | Minus |
BS02841.pep Sequence
Translation from 16 to 972
> BS02841.pep
MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDED
TNYGYPQKRLYGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTR
RFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTD
WVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVT
VSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC
VAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLF
AGYSDNTIRVWQVSVSAH*
BS02841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-PC | 318 | CG7111-PC | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PD | 318 | CG7111-PD | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PA | 318 | CG7111-PA | 1..318 | 1..318 | 1735 | 100 | Plus |
| Rack1-PB | 109 | CG7111-PB | 1..107 | 1..107 | 574 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 68..315 | 60..313 | 317 | 30.2 | Plus |
