Clone Sequence Records
BS02902.3prime Sequence
507 bp (506 high quality bases) assembled on 2005-11-30
> BS02902.3prime
ATGGTCTAGAAAGCTTTTAGGCCTGAACCCAACGGTCGAACTGCTGGCGC
AACTGCTGTTCGTGGTGCTGGCGAGCTCCCTCGGCTGAGGTCCAGAAGAA
GGTGCCGCTGGTGGTGCGGGCGAAGTGGACCGGGATGAAGGTCTGCTCCG
GATGGACGGGCACGATGCTCTGTTGCTGACCCTGCTGCACGATCATGGCC
ACGTTGGTGGGGCACTGGCGGAGATCGGTGTACAGTCGCTGCTCCAGCTC
CTCGTTGGCCATGTTATCGCAACTGGCCGCCGGATCTTTGCGCATGTCCT
CCAGCGAGGCGTTGACTGCATTTTGGTTCTGGATCTCGGCCAGAGTCTTC
CGGAGTAGCTGCTTCTTCTTCACCAGTCGCAGAAGGGGTTTGACCAGTTT
CCTCAGACTCCGCATGGCCATCGTGTGCTGATCTGATTTCGGCTCCATCA
CCTTGCTGCTCTCAAACTTGTATTCCCGTGTGATGAACGACATGTCGACT
GATAACT
BS02902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5185-PA | 477 | Tom-RA | 1..477 | 493..17 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom-RA | 963 | CG5185-RA | 84..561 | 493..16 | 2390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14969427..14969904 | 493..16 | 2390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 14:04:50 has no hits.
BS02902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:18 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:47 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5185-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:06:58 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 76..561 | 16..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:54:36 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 76..561 | 16..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:54:36 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14969419..14969904 | 16..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:06:58 Download gff for
BS02902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14962519..14963004 | 16..502 | 99 | | Minus |
BS02902.5prime Sequence
499 bp (499 high quality bases) assembled on 2005-11-28
> BS02902.5prime
CAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGAGCAGCAAG
GTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGGAGTCTGAG
GAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCAGCTACTCC
GGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACGCCTCGCTG
GAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATGGCCAACGA
GGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCCCACCAACG
TGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGCCCGTCCAT
CCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACCAGCGGCAC
CTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGAACAGCAGT
TGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCTAAAAGCTTTCTAGACC
BS02902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5185-PA | 477 | Tom-RA | 1..477 | 9..485 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom-RA | 963 | CG5185-RA | 84..561 | 9..486 | 2390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14969427..14969904 | 9..486 | 2390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:33:44 has no hits.
BS02902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:19 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-PA | 1..477 | 9..485 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:49 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5185-PA | 1..477 | 9..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:49:42 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 77..561 | 1..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:27 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 77..561 | 1..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:27 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14969420..14969904 | 1..486 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:49:42 Download gff for
BS02902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14962520..14963004 | 1..486 | 99 | | Plus |
BS02902.complete Sequence
509 bp (509 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634687
> BS02902.complete
GAAGTTATCAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGA
GCAGCAAGGTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGG
AGTCTGAGGAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCA
GCTACTCCGGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACG
CCTCGCTGGAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATG
GCCAACGAGGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCC
CACCAACGTGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGC
CCGTCCATCCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACC
AGCGGCACCTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGA
ACAGCAGTTGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCTAAAAGCTTT
CTAGACCAT
BS02902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom-RA | 477 | CG5185-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom-RA | 963 | CG5185-RA | 84..561 | 17..494 | 2390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14969427..14969904 | 17..494 | 2390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:26:21 has no hits.
BS02902.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:05 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:21 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 73..558 | 8..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:42 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 84..558 | 17..491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:05 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 73..558 | 8..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:30 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom-RA | 84..558 | 17..491 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:30 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14969427..14969901 | 17..491 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:42 Download gff for
BS02902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14962527..14963001 | 17..491 | 100 | | Plus |
BS02902.pep Sequence
Translation from 16 to 492
> BS02902.pep
MSFITREYKFESSKVMEPKSDQHTMAMRSLRKLVKPLLRLVKKKQLLRKT
LAEIQNQNAVNASLEDMRKDPAASCDNMANEELEQRLYTDLRQCPTNVAM
IVQQGQQQSIVPVHPEQTFIPVHFARTTSGTFFWTSAEGARQHHEQQLRQ
QFDRWVQA*
BS02902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom-PA | 158 | CG5185-PA | 1..158 | 1..158 | 815 | 100 | Plus |
| Ocho-PB | 149 | CG3396-PB | 22..149 | 28..158 | 180 | 37 | Plus |
| Ocho-PC | 149 | CG3396-PC | 22..149 | 28..158 | 180 | 37 | Plus |
