Clone Sequence Records
BS02905.3prime Sequence
747 bp (700 high quality bases) assembled on 2005-11-30
> BS02905.3prime
ATGGTCTAGAAAGCTTTTAGTCCGCGATCAGGGGCTTGCCGTTCTGCTTC
TCCTTGTCCTTGTCCAATTGCTCCAAGAGTATAGCTGGATTGGGTTGACC
CTGATGGGTCTTCTGCTTCAGCATTGTCCAGTCGTAGATGTAGTCATACT
GATGGTTCAGCGTTCTGAACAGTATGCGGAACAATTGACGTAGGTACATG
TAATCTGGCTGCTCCTCGAAGCGCAGGCTACGACAATAGTTCAGATACAT
GGAGAACTCGGCCGGCGAGCCCTTGCAGAGGACCTCGATGGGCGTGGACA
TCTTCTTTTCGGAGATCTTCTCGTATTTCTGCTGCTTGGTGTTGGCCTTC
ATGCCTTGCCATGGCAGTACGCCGCGATTGAAGTACATCATCACGTATCC
AAGCGATTCCATGTCGTCACGCCGCGACTGCTCGATGCCCAGATGGGCAT
TGATCGAGGCATAGCGGGCAGTGCCGGTGAGGTTCTTGTCCTCGCGGTAA
ACGATGTGATGGCGCGTGTGCGGATCGCGGAACTTCTTGGCCAGACCGAA
ATCGATCAGGAACAGCTTATTGCAGTGCCGACCAATGCCCATTAGGAAGT
TATCCGGCTTGATGTCGCGATGGATGAAGCACTTGAGATGGATGTACTCC
AAGCGTCCGATCATCTGGTCGACGAGCATCAGAACCGTTTTGATTGTGAA
ATGGCGCGTACAGAAATTGAACAGATCCTCCAGCGAGGGTCCCAGCA
BS02905.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2028-PB | 1014 | CkIalpha-RB | 284..1014 | 747..17 | 3655 | 100 | Minus |
| CG2028-PC | 1014 | CkIalpha-RC | 284..1014 | 747..17 | 3655 | 100 | Minus |
| CG2028-PA | 1014 | CkIalpha-RA | 284..1014 | 747..17 | 3655 | 100 | Minus |
| CG2048-PA | 1323 | dco-RA | 369..410 | 629..588 | 185 | 97.6 | Minus |
| CG2048-PB | 1323 | dco-RB | 369..410 | 629..588 | 185 | 97.6 | Minus |
| CG2048-PC | 1323 | dco-RC | 369..410 | 629..588 | 185 | 97.6 | Minus |
| CG2048-PA | 1323 | dco-RA | 509..548 | 489..450 | 150 | 95 | Minus |
| CG2048-PB | 1323 | dco-RB | 509..548 | 489..450 | 150 | 95 | Minus |
| CG2048-PC | 1323 | dco-RC | 509..548 | 489..450 | 150 | 95 | Minus |
| CG2577-PA | 1035 | CG2577-RA | 403..434 | 619..588 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1997 | CG2028-RG | 485..1220 | 747..12 | 3665 | 99.9 | Minus |
| CkIalpha-RF | 1997 | CG2028-RF | 485..1220 | 747..12 | 3665 | 99.9 | Minus |
| CkIalpha-RD | 2232 | CG2028-RD | 720..1455 | 747..12 | 3665 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12655582..12656152 | 747..177 | 2855 | 100 | Minus |
| X | 23542271 | X | 12656333..12656498 | 177..12 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 31057085..31057596 | 231..742 | 640 | 75 | Plus |
| 2L | 23513712 | 2L | 17555095..17555188 | 535..628 | 230 | 83 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:16:36 has no hits.
BS02905.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:21 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2028-PC | 285..1014 | 17..746 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:31:52 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2028-PA | 285..1014 | 17..746 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:23:34 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 622..1360 | 6..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:17 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RD | 721..1459 | 6..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:17 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12655583..12656152 | 177..746 | 100 | -> | Minus |
| X | 12656334..12656502 | 6..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:23:34 Download gff for
BS02905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12549616..12550185 | 177..746 | 100 | -> | Minus |
| arm_X | 12550367..12550535 | 6..176 | 97 | | Minus |
BS02905.complete Sequence
1046 bp (1046 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634688
> BS02905.complete
GAAGTTATCAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCC
CCGAGATAATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGC
GGATCGTTTGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGA
AGTGGCCATCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGT
ACGAGGCCAAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGT
ATACGTCACCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCT
GCTGGGACCCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCA
CAATCAAAACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAG
TACATCCATCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTT
CCTAATGGGCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCG
GTCTGGCCAAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTAC
CGCGAGGACAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGC
CCATCTGGGCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGAT
ACGTGATGATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAG
GCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTC
CACGCCCATCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGT
ATCTGAACTATTGTCGTAGCCTGCGCTTCGAGGAGCAGCCAGATTACATG
TACCTACGTCAATTGTTCCGCATACTGTTCAGAACGCTGAACCATCAGTA
TGACTACATCTACGACTGGACAATGCTGAAGCAGAAGACCCATCAGGGTC
AACCCAATCCAGCTATACTCTTGGAGCAATTGGACAAGGACAAGGAGAAG
CAGAACGGCAAGCCCCTGATCGCGGACTAAAAGCTTTCTAGACCAT
BS02905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1014 | CG2028-PG | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| CkIalpha-RF | 1014 | CG2028-PF | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| CkIalpha-RD | 1014 | CG2028-PD | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1997 | CG2028-RG | 202..1220 | 17..1035 | 5080 | 99.9 | Plus |
| CkIalpha-RF | 1997 | CG2028-RF | 202..1220 | 17..1035 | 5080 | 99.9 | Plus |
| CkIalpha-RD | 2232 | CG2028-RD | 437..1455 | 17..1035 | 5080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12655377..12656152 | 95..870 | 3880 | 100 | Plus |
| X | 23542271 | X | 12656333..12656498 | 870..1035 | 815 | 99.4 | Plus |
| 3R | 32079331 | 3R | 31057085..31057613 | 816..288 | 665 | 75 | Minus |
| X | 23542271 | X | 12655238..12655317 | 17..96 | 400 | 100 | Plus |
| 2L | 23513712 | 2L | 17555095..17555188 | 512..419 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:12 has no hits.
BS02905.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:06 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:42 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 278..1304 | 9..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:29 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 338..1349 | 17..1028 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:06 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 278..1304 | 9..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:19 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RD | 437..1448 | 17..1028 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:19 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12655238..12655316 | 17..95 | 100 | -> | Plus |
| X | 12655378..12656152 | 96..870 | 100 | -> | Plus |
| X | 12656334..12656491 | 871..1028 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:29 Download gff for
BS02905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12549271..12549349 | 17..95 | 100 | -> | Plus |
| arm_X | 12549411..12550185 | 96..870 | 100 | -> | Plus |
| arm_X | 12550367..12550524 | 871..1028 | 100 | | Plus |
BS02905.pep Sequence
Translation from 16 to 1029
> BS02905.pep
MDKMRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKM
ESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSL
EDLFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIG
RHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIE
QSRRDDMESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEV
LCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYIYD
WTMLKQKTHQGQPNPAILLEQLDKDKEKQNGKPLIAD*
BS02905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-PG | 337 | CG2028-PG | 1..337 | 1..337 | 1790 | 100 | Plus |
| CkIalpha-PF | 337 | CG2028-PF | 1..337 | 1..337 | 1790 | 100 | Plus |
| CkIalpha-PD | 337 | CG2028-PD | 1..337 | 1..337 | 1790 | 100 | Plus |
| CkIalpha-PE | 337 | CG2028-PE | 1..337 | 1..337 | 1790 | 100 | Plus |
| CkIalpha-PA | 337 | CG2028-PA | 1..337 | 1..337 | 1790 | 100 | Plus |
