Clone BS02922 Report

Search the DGRC for BS02922

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:29
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptStam-RA
Protein status:BS02922.pep: full length peptide match
Sequenced Size:2102

Clone Sequence Records

BS02922.3prime Sequence

762 bp (760 high quality bases) assembled on 2005-11-30

> BS02922.3prime
ATGGTCTAGAAAGCTTTTACCGCTGCTGCTGGTAGATAGGAATGTTGTTC
TTGACAGCATCGTTCTGCATGTGATAGCCGGGCGCCCCAACTGGCGGTCC
GCCAGCCATGGACATGGCGGCCATCTGCTGATGCAGCTGACTAAACTGAT
CGTGTGGTGGTGGGTGTTGTTGCTGCTGCTGCTGTGGGGACATGTAGCTC
TGCGGGTTGACGACGGCCGGCGATCCGTTCGGTCCATAAAGATTTGGTCC
TGGCTGGTATCCCTGTGGTGGCGGTGCCTGCTGATGCTGCGGCGACATGT
AAGCGTGCGGAGCCGGTGGCTGCTGCGGCTGCTGGATTTGTGTGACTGCG
GGCGGAACTTGGGCGTACTGTGACTGGGGGTCGATGTGGTAGCTGTTCTG
GGGATGCTGTGGGGGCTGCTGGCCTTGCTGCTGTGGCGGCTGTTGAGGGT
GCTGTGGAAGTGGCTGCTGCTGCTGTTGGGTGGTCACGGGAGTCGGCTGA
GTGTAGATTGGCTGGGGCATGGGTGCAGTGCCAGTGGGTTGAGTCAAATG
GGCTGGCAGCGAGTTCATCTGTGCGGCATGTCCGTTCTGATAGGGCAGTG
GCACCTGCCCCTGCGGTTGACCCAGATAGCCACCAGGAGCTCCAGGTGCC
TGAGATGGAGCAGAAGTGGGAGGATTTGGTACGGGGCCATATGGCATCGA
GTGCATGCCCGGATAATTTTGGGCCGGTGGGAATCCACCCGCTGCAGGAT
AACCTGGAGCAC

BS02922.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6521-PA 2070 Stam-RA 1325..2070 762..17 3730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 1624..2369 762..17 3730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10860977..10861521 561..17 2725 100 Minus
2L 23513712 2L 10860710..10860910 762..562 1005 100 Minus
Blast to na_te.dros performed 2015-02-11 18:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7013 454..157 241 60.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2514 478..316 224 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6885 316..126 167 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2512 334..126 154 55.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2528 351..154 149 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6937 293..91 146 58.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6924 187..12 140 57 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6923 341..163 132 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6790 202..125 129 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2467 287..126 126 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6856 187..125 124 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2380 187..126 123 69.4 Minus
roo 9092 roo DM_ROO 9092bp 1046..1120 202..125 121 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2411 184..125 120 66.7 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3291..3351 184..127 118 68.9 Minus
roo 9092 roo DM_ROO 9092bp 1054..1141 212..125 116 59.1 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1039 188..121 110 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6866 187..90 109 58.2 Minus

BS02922.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:37 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-PA 1325..2070 17..762 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:12 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6521-PA 1325..2070 17..762 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:49:43 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 1624..2369 17..762 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:45 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 1624..2369 17..762 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:45 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10860710..10860910 562..762 100 -> Minus
2L 10860977..10861521 17..561 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:49:43 Download gff for BS02922.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10860710..10860910 562..762 100 -> Minus
arm_2L 10860977..10861521 17..561 100   Minus

BS02922.5prime Sequence

650 bp (600 high quality bases) assembled on 2005-11-30

> BS02922.5prime
GAAGTTATCAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACG
CCGACGTGGAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCT
CTGATTTTGGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAA
GGATTGCCTGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATG
TGGTGATGCAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGA
AAACCGCTCCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCG
CCGCCTGTTGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAG
TGCTGAAGAACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGAC
TTGATACCCGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAA
GAATCTTGGCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCC
TGCCCAAAGATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATC
GCCAAGGCCATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGAC
TGTGAGTGTAGCAAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTAT

BS02922.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6521-PA 2070 Stam-RA 1..598 17..614 2965 99.8 Plus
CG6521-PA 2070 Stam-RA 597..633 614..650 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 300..932 17..650 3130 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10859700..10860018 331..650 1520 99.1 Plus
2L 23513712 2L 10859369..10859647 59..337 1395 100 Plus
2L 23513712 2L 10858835..10858877 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:22:55 has no hits.

BS02922.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:38 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:13 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6521-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:47:46 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 292..932 8..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:23:41 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 292..932 8..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:23:41 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10859370..10859647 60..337 100 -> Plus
2L 10858827..10858877 8..59 92 -> Plus
2L 10859707..10860018 338..650 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:47:46 Download gff for BS02922.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10858827..10858877 8..59 92 -> Plus
arm_2L 10859370..10859647 60..337 100 -> Plus
arm_2L 10859707..10860018 338..650 99   Plus

BS02922.complete Sequence

2102 bp assembled on 2010-05-10

GenBank Submission: KX799629

> BS02922.complete
GAAGTTATCAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACG
CCGACGTGGAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCT
CTGATTTTGGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAA
GGATTGCCTGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATG
TGGTGATGCAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGA
AAACCGCTCCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCG
CCGCCTGTTGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAG
TGCTGAAGAACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGAC
TTGATACCCGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAA
GAATCTTGGCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCC
TGCCCAAAGATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATC
GCCAAGGCCATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGAC
TGGGAGTGTAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATC
CATCTTTCGCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCC
GCACCAGCGCCAGAGCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGC
TGCCGAGGAAAACGAATTGACCTTCTTTGCCGGCGAGATCATTCATGTGC
TGGATGATAGTGATCCAAACTGGTGGAAGGGATACAATCAACGCGGCGAG
GGTCTCTTCCCCTCGAACTTTGTCACTGCCGATCTGTCCGTCGATCCCGA
GCGGCTGGACATCAATCAGCAGCATAAGTCGGCCGCCGCAGCCGGGCAAC
GAGAGTTGGATTCCGCTGCGGCACTGCAGCAAAAGACTGAAGCGGCAGCA
GCTGCCGCCGCAGCTCAGCCTGTGGAGATCGACGAGTCAAAGATCGACCG
GCTGCTGCATTTGCTGCACGAGGCGAATCCCGAAGATCCCTCGCAGGACA
GCGACGAAATGCTGCAGCTGGAGCAGGAGGTCCATCAGATGGGACCGCTG
ATCGATGCCGAGCTGGAACGCGTCGACCGCAAGCACGCTCAACTGACGCA
GTTGTCCAGCGACCTCGTCGACGCCATTAATCTGTACCATACCTTGATGC
GGGATGACCGTGCTGCGGCTGGACATTTTGCCGCCGCTGCTGGCGGCTTT
ATGCCTGGACTTGCTGGTTTCCCGGGTGCCGCTCTGTACGGTGCTCCAGG
TTATCCTGCAGCGGGTGGATTCCCACCGGCCCAAAATTATCCGGGCATGC
ACTCGATGCCATATGGCCCCGTACCAAATCCTCCCACTTCTGCTCCATCT
CAGGCACCTGGAGCTCCTGGTGGCTATCTGGGTCAACCGCAGGGGCAGGT
GCCACTGCCCTATCAGAACGGACATGCCGCACAGATGAACTCGCTGCCAG
CCCATTTGACTCAACCCACTGGCACTGCACCCATGCCCCAGCCAATCTAC
ACTCAGCCGACTCCCGTGACCACCCAACAGCAGCAGCAGCCACTTCCACA
GCACCCTCAACAGCCGCCACAGCAGCAAGGCCAGCAGCCCCCACAGCATC
CCCAGAACAGCTACCACATCGACCCCCAGTCACAGTACGCCCAAGTTCCG
CCCGCAGTCACACAAATCCAGCAGCCGCAGCAGCCACCGGCTCCGCACGC
TTACATGTCGCCGCAGCATCAGCAGGCACCGCCACCACAGGGATACCAGC
CAGGACCAAATCTTTATGGACCGAACGGATCGCCGGCCGTCGTCAACCCG
CAGAGCTACATGTCCCCACAGCAGCAGCAGCAACAACACCCACCACCACA
CGATCAGTTTAGTCAGCTGCATCAGCAGATGGCCGCCATGTCCATGGCTG
GCGGACCGCCAGTTGGGGCGCCCGGCTATCACATGCAGAACGATGCTGTC
AAGAACAACATTCCTATCTACCAGCAGCAGCGGTAAAAGCTTTCTAGACC
AT

BS02922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2070 CG6521-PA 1..2070 17..2086 10350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 300..2369 17..2086 10350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10859700..10860910 331..1541 6040 99.9 Plus
2L 23513712 2L 10860977..10861521 1542..2086 2725 100 Plus
2L 23513712 2L 10859369..10859647 59..337 1395 100 Plus
2L 23513712 2L 10858835..10858877 17..59 215 100 Plus
Blast to na_te.dros performed 2014-11-28 01:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7013 1649..1946 241 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6885 1787..1977 167 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2512 1769..1977 154 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2528 1752..1949 149 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6937 1810..2012 146 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6924 1916..2091 140 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6923 1762..1940 132 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6790 1901..1978 129 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2467 1816..1977 126 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6856 1916..1978 124 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2380 1916..1977 123 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2411 1919..1978 120 66.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3291..3351 1919..1976 118 68.9 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 1891..1978 116 59.1 Plus

BS02922.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:37 Download gff for BS02922.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 308..2375 17..2084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:16 Download gff for BS02922.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2367 17..2084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:44 Download gff for BS02922.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2367 17..2084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:44 Download gff for BS02922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10858835..10858877 17..59 100 -> Plus
2L 10859370..10859647 60..337 100 -> Plus
2L 10859707..10860910 338..1541 100 -> Plus
2L 10860977..10861519 1542..2084 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:16 Download gff for BS02922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10858835..10858877 17..59 100 -> Plus
arm_2L 10859370..10859647 60..337 100 -> Plus
arm_2L 10859707..10860910 338..1541 100 -> Plus
arm_2L 10860977..10861519 1542..2084 100   Plus

BS02922.pep Sequence

Translation from 16 to 2085

> BS02922.pep
MGIFGQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKA
VMRRMGHTDPHVVMQAITLLDALSNNCGKPLHLEVASRDFETEFRRLLAK
AQPKVSLKMRQVLKNWAENDYKNDRELDLIPALYAKLRQEGYDFKNLGDK
TSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKTGSVAS
TGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENE
LTFFAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDIN
QQHKSAAAAGQRELDSAAALQQKTEAAAAAAAAQPVEIDESKIDRLLHLL
HEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELERVDRKHAQLTQLSSDL
VDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAG
GFPPAQNYPGMHSMPYGPVPNPPTSAPSQAPGAPGGYLGQPQGQVPLPYQ
NGHAAQMNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQQQPLPQHPQQP
PQQQGQQPPQHPQNSYHIDPQSQYAQVPPAVTQIQQPQQPPAPHAYMSPQ
HQQAPPPQGYQPGPNLYGPNGSPAVVNPQSYMSPQQQQQQHPPPHDQFSQ
LHQQMAAMSMAGGPPVGAPGYHMQNDAVKNNIPIYQQQR*

BS02922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-PA 689 CG6521-PA 1..689 1..689 3657 100 Plus
CG10555-PB 926 CG10555-PB 466..660 444..668 223 33.8 Plus
CG10555-PA 926 CG10555-PA 466..660 444..668 223 33.8 Plus
osa-PE 2555 CG7467-PE 1146..1436 430..669 196 29.3 Plus
osa-PC 2556 CG7467-PC 1147..1437 430..669 196 29.3 Plus
osa-PE 2555 CG7467-PE 18..356 422..669 190 28.5 Plus
osa-PE 2555 CG7467-PE 69..359 441..667 190 30.7 Plus
osa-PE 2555 CG7467-PE 185..459 444..671 187 29.9 Plus
CG10555-PB 926 CG10555-PB 230..461 450..688 184 31.7 Plus
CG10555-PA 926 CG10555-PA 230..461 450..688 184 31.7 Plus
CG10555-PB 926 CG10555-PB 640..922 407..674 174 29.9 Plus
CG10555-PA 926 CG10555-PA 640..922 407..674 174 29.9 Plus
CG10555-PB 926 CG10555-PB 501..751 416..644 172 29.4 Plus
CG10555-PA 926 CG10555-PA 501..751 416..644 172 29.4 Plus
osa-PE 2555 CG7467-PE 1355..1632 444..689 166 27.7 Plus