Clone Sequence Records
BS02951.3prime Sequence
785 bp (648 high quality bases) assembled on 2005-11-30
> BS02951.3prime
ATGGTCTAGAAAGCTTTTAACTACAGCTACTAAAGAGCATTGTGACTAGA
GTGAGGAGCATCCACGTCGCGGTGCCTTCCAGTGGGTTGGACCCACTGGT
CTTGCCGCTGTCACGCGACTCCACTTCGTTGGTGGTGGTGCCTTCGGATT
CCTCGATGGGCGTATGGGGTCCATCGCCGGAACCATCTCCGGAACCATGT
GCGCCTCCATACTCCTCCTCATCGTCGCCGATCTGACCTTCTCCGCCGCC
GGAGCCCTCACCCATATCATTCTGGATGTCGTGCGTCGCCTGTATGCTGT
TGGAAGGTGCCGCAGCTCCAATGCTCTTGCGAATCTTGAAGAGCTTGTCG
ACCAGCTCGTTCAGCTTGCCGGTCTGAGCCTTCGCATTGAAGGGCACCTC
GGGATTATATCGCTGGCTATCAGTGCCCGGATTAATCAGCAGCTGAGTGT
AGTCCCCGAAACGATCGCCTGACCAGCAGGAGTGATCGTCACGAGAGTGC
TGTTGCTCATCGCAGAAGTTGTCCACGATGGTCGTGTAGAACTCCTTGCT
CTTGTCGATGGTGGACAGGAAGAGGACCATGCCCGGATCCGGGTCAGTGG
CCCACTTTACGTTGTTCTTGTGGGGCGGAGGCCGCGCATCCGGTTCTCCG
GACGAATAGGGCGTCAGGCTGGGCGTGCCACATGTCTTCTTTACCTTTTT
TTCCAGTTCAGGCCCATTGTGCATGGGAACCATGATTGCCTCAGAGAAAA
TAATCTGCAGGTGTTTGATGACTTTAATGATGCCC
BS02951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4974-PA | 1881 | dally-RA | 1149..1881 | 749..17 | 3615 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 1842..2609 | 784..17 | 3750 | 99.3 | Minus |
dally-RA | 3444 | CG4974-RA | 1842..2609 | 784..17 | 3750 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8888652..8888860 | 518..310 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 8887957..8888134 | 696..519 | 890 | 100 | Minus |
3L | 28110227 | 3L | 8889163..8889318 | 172..17 | 780 | 100 | Minus |
3L | 28110227 | 3L | 8888923..8889063 | 311..171 | 705 | 100 | Minus |
3L | 28110227 | 3L | 8887197..8887290 | 784..691 | 380 | 93.6 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:16:47 has no hits.
BS02951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:52 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-PA | 1113..1881 | 17..785 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:33 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4974-PA | 1113..1881 | 17..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:23:36 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 1841..2609 | 17..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:20 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 1841..2609 | 17..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:20 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8887196..8887286 | 695..785 | 93 | -> | Minus |
3L | 8887959..8888134 | 519..694 | 100 | -> | Minus |
3L | 8888652..8888859 | 311..518 | 100 | -> | Minus |
3L | 8888924..8889062 | 172..310 | 100 | -> | Minus |
3L | 8889164..8889318 | 17..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:23:36 Download gff for
BS02951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8882024..8882162 | 172..310 | 100 | -> | Minus |
arm_3L | 8882264..8882418 | 17..171 | 100 | | Minus |
arm_3L | 8880296..8880386 | 695..785 | 93 | -> | Minus |
arm_3L | 8881059..8881234 | 519..694 | 100 | -> | Minus |
arm_3L | 8881752..8881959 | 311..518 | 100 | -> | Minus |
BS02951.5prime Sequence
505 bp (241 high quality bases) assembled on 2005-11-30
> BS02951.5prime
GAAGTTATCAGCCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCTCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGCGTGATGCCGTCAAGAGCTACTTCAAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGCGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCT
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
CGTAT
BS02951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4974-PA | 1881 | dally-RA | 1..484 | 17..500 | 2295 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 729..1212 | 17..500 | 2345 | 99 | Plus |
dally-RA | 3444 | CG4974-RA | 729..1212 | 17..500 | 2345 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8828233..8828504 | 17..288 | 1315 | 98.9 | Plus |
3L | 28110227 | 3L | 8877156..8877303 | 286..433 | 710 | 98.6 | Plus |
3L | 28110227 | 3L | 8886275..8886343 | 432..500 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:23:04 has no hits.
BS02951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:53 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-PA | 1..488 | 17..505 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:34 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4974-PA | 1..488 | 17..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:47:47 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 721..1216 | 9..505 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:20 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 721..1216 | 9..505 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:20 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8828225..8828503 | 9..287 | 97 | -> | Plus |
3L | 8877158..8877301 | 288..431 | 98 | -> | Plus |
3L | 8886275..8886347 | 432..505 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:47:47 Download gff for
BS02951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8821325..8821603 | 9..287 | 97 | -> | Plus |
arm_3L | 8870258..8870401 | 288..431 | 98 | -> | Plus |
arm_3L | 8879375..8879447 | 432..505 | 98 | | Plus |
BS02951.complete Sequence
1913 bp assembled on 2010-06-25
GenBank Submission: KX795981
> BS02951.complete
GAAGTTATCAGTCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCGCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGTGTGATGCCGTCAAGAGCTACTTCGAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGTGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCG
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
GTATGGTGCCTTCATCGCGTATGATGATCCATCAACTGTACACCGAAATC
ATGAACCATCTGATTTACACCTCCAACTATACGAACAGCAATGGCCAACT
GGGCAGGCGAGGAATTGGCAGTGTCCAGAGCAACTTGGAGGAGGCTGTCA
GGCACTTCTTTGTTCAGTTGTTCCCCGTGGCCTACCACCAGATGGTCCAT
CTGTCCAAGAACAATTTGGGTGACTTGCACGAGGACTACGTTAACTGCCT
GCAGCACAACTTCGACGAGATGCATCCATTCGGGGACATTCCCCAGCAAG
TGCAGTCCAACTTGGGCAAGAGTGTCCATATGTCCAATGTCTTCATGAAT
GCCCTGCTCCAGGCCGCCGAGGTCCTCAGCGAAGCGGATGCCCTTTATGG
CGAACAACTGACGGACACGTGCAAACTGCATCTCCTCAAGATGCACTACT
GCCCCAACTGCAATGGACACCATTCAAGTTCTAGGAGCGAAACGAAATTG
TGCTACGGCTACTGCAAGAACGTAATGCGCGGCTGTTCGGCGGAATATGC
CGGACTACTGGACAGTCCCTGGTCAGGTGTAGTCGACTCCCTGAACAATC
TGGTCACCACCCATATTCTCTCGGACACCGGCATCATTAATGTCATCAAA
CACCTGCAGACTTATTTCTCTGAGGCAATCATGGCTGCCATGCACAATGG
GCCTGAACTGGAAAAAAAGGTAAAGAAGACATGTGGCACGCCCAGCCTGA
CGCCCTATTCGTCCGGAGAACCGGATGCGCGGCCTCCGCCCCACAAGAAC
AACGTAAAGTGGGCCACTGACCCGGATCCGGGCATGGTCCTCTTCCTGTC
CACCATCGACAAGAGCAAGGAGTTCTACACGACCATCGTGGACAACTTCT
GCGATGAGCAACAGCACTCTCGTGACGATCACTCCTGCTGGTCAGGCGAT
CGTTTCGGGGACTACACTCAGCTGCTGATTAATCCGGGCACTGATAGCCA
GCGATATAATCCCGAGGTGCCCTTCAATGCGAAGGCTCAGACCGGCAAGC
TGAACGAGCTGGTCGACAAGCTCTTCAAGATTCGCAAGAGCATTGGAGCT
GCGGCACCTTCCAACAGCATACAGGCGACGCACGACATCCAGAATGATAT
GGGTGAGGGCTCCGGCGGCGGAGAAGGTCAGATCGGCGACGATGAGGAGG
AGTATGGAGGCGCACATGGTTCCGGAGATGGTTCCGGCGATGGACCCCAT
ACGCCCATCGAGGAATCCGAAGGCACCACCACCAACGAAGTGGAGTCGCG
TGACAGCGGCAAGACCAGTGGGTCCAACCCACTGGAAGGCACCGCGACGT
GGATGCTCCTCACTCTAGTCACAATGCTCTTTAGTAGCTGTAGTTAAAAG
CTTTCTAGACCAT
BS02951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 1881 | CG4974-PB | 1..1881 | 17..1897 | 9405 | 100 | Plus |
dally-RA | 1881 | CG4974-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 729..2609 | 17..1897 | 9405 | 100 | Plus |
dally-RA | 3444 | CG4974-RA | 729..2609 | 17..1897 | 9405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8886497..8886970 | 556..1029 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 8828233..8828504 | 17..288 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 8888652..8888860 | 1396..1604 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 8887096..8887290 | 1029..1223 | 975 | 100 | Plus |
3L | 28110227 | 3L | 8887957..8888134 | 1218..1395 | 890 | 100 | Plus |
3L | 28110227 | 3L | 8889163..8889318 | 1742..1897 | 780 | 100 | Plus |
3L | 28110227 | 3L | 8877156..8877303 | 286..433 | 740 | 100 | Plus |
3L | 28110227 | 3L | 8888923..8889063 | 1603..1743 | 705 | 100 | Plus |
3L | 28110227 | 3L | 8886275..8886398 | 432..555 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:53:54 has no hits.
BS02951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 16:09:56 Download gff for
BS02951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 728..2606 | 17..1895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:49 Download gff for
BS02951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 729..2607 | 17..1895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:55 Download gff for
BS02951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 729..2607 | 17..1895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:55 Download gff for
BS02951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8887959..8888134 | 1220..1395 | 100 | -> | Plus |
3L | 8888652..8888859 | 1396..1603 | 100 | -> | Plus |
3L | 8888924..8889062 | 1604..1742 | 100 | -> | Plus |
3L | 8889164..8889316 | 1743..1895 | 100 | | Plus |
3L | 8828233..8828503 | 17..287 | 100 | -> | Plus |
3L | 8877158..8877301 | 288..431 | 100 | -> | Plus |
3L | 8886275..8886398 | 432..555 | 100 | -> | Plus |
3L | 8886497..8886970 | 556..1029 | 100 | -> | Plus |
3L | 8887097..8887286 | 1030..1219 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:49 Download gff for
BS02951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8882024..8882162 | 1604..1742 | 100 | -> | Plus |
arm_3L | 8882264..8882416 | 1743..1895 | 100 | | Plus |
arm_3L | 8881059..8881234 | 1220..1395 | 100 | -> | Plus |
arm_3L | 8881752..8881959 | 1396..1603 | 100 | -> | Plus |
arm_3L | 8821333..8821603 | 17..287 | 100 | -> | Plus |
arm_3L | 8870258..8870401 | 288..431 | 100 | -> | Plus |
arm_3L | 8879375..8879498 | 432..555 | 100 | -> | Plus |
arm_3L | 8879597..8880070 | 556..1029 | 100 | -> | Plus |
arm_3L | 8880197..8880386 | 1030..1219 | 100 | -> | Plus |
BS02951.pep Sequence
Translation from 16 to 1896
> BS02951.pep
MAARSVRLAQLLLFTLLCGFVGLSAAKHLDLDGIHHHQHHLHSATTHHRR
RLQRDSRAKDAVGGSTHQCDAVKSYFESIDIKSSGTYSEKGAICGGNCCN
NATELELRDKAAGMFEQLLHHHTSSLRGVLETNAKQFQSHVLELAQISEN
MTHSLFSKVYTRMVPSSRMMIHQLYTEIMNHLIYTSNYTNSNGQLGRRGI
GSVQSNLEEAVRHFFVQLFPVAYHQMVHLSKNNLGDLHEDYVNCLQHNFD
EMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTD
TCKLHLLKMHYCPNCNGHHSSSRSETKLCYGYCKNVMRGCSAEYAGLLDS
PWSGVVDSLNNLVTTHILSDTGIINVIKHLQTYFSEAIMAAMHNGPELEK
KVKKTCGTPSLTPYSSGEPDARPPPHKNNVKWATDPDPGMVLFLSTIDKS
KEFYTTIVDNFCDEQQHSRDDHSCWSGDRFGDYTQLLINPGTDSQRYNPE
VPFNAKAQTGKLNELVDKLFKIRKSIGAAAPSNSIQATHDIQNDMGEGSG
GGEGQIGDDEEEYGGAHGSGDGSGDGPHTPIEESEGTTTNEVESRDSGKT
SGSNPLEGTATWMLLTLVTMLFSSCS*
BS02951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-PB | 626 | CG4974-PB | 1..626 | 1..626 | 3342 | 100 | Plus |
dally-PA | 626 | CG4974-PA | 1..626 | 1..626 | 3342 | 100 | Plus |
dlp-PC | 764 | CG32146-PC | 116..397 | 96..411 | 256 | 24.7 | Plus |
dlp-PA | 765 | CG32146-PA | 116..397 | 96..411 | 256 | 24.7 | Plus |