Clone Sequence Records
BS02952.complete Sequence
3566 bp assembled on 2010-07-15
GenBank Submission: KX794537
> BS02952.complete
GAAGTTATCAGTCGACATGGCCCTGGCCAACGGGGGAGAGGATAGAATGG
ACGACAGCAGCAGCGGACGCACTTCGCTGGCGGACAGCGCCAGCCTGACG
AACTCCTCGCTGCGCAGCGGCACCTCCTCGCAGAGCATCCACACCAACGA
TGGCACAATCCGTGTGTTCAACTTCACCACCGGCGAATTTGAGCGTTTCC
ATCCCAACATGCTGTGCGAGGAGATCTGCAATACGATGTGCCGCCAGCTG
GGCATTGCACCAATTGCCCAGCTGCTCTACGGAATACGGGAGCACTCGAC
ATCGCGACGTCCCTCGCCGCTGGTGCGTTTGGATCTGACGTGGTGCCTGC
CCGGCGAGCGACTCAACTGCCAGCTGGTCTATTGCTTTCGGATGCGTTTC
CGTGTGCCCGAATTGGATAGCCAGCTGGAGTTGATCGATGGACGGAGCCA
CAAGTTCCTCTACCGCCAAATGCGCTACGATATGCGGACCGAGCAAATCC
CGGAGATTCGCTATCCGGAGCACAAGGACAAATCAACGGGACTGGCCGTG
ATGGATATGCTAATCGACGATCAGGAACAGTCGGAGGATCAGCAGGCGAT
GCGCTCCATCGAGAAGCTTTACAAACTGTATTTGCCACCGAGCTTGTGGC
GCGCCCACAGCTTCTTTGTGGGCTCCAAGATACGTGAGGTTTTCCGCAGT
CTAAAAGCGAATTCGCTGAGTGTGGAGCGTTTGAAGTGGCACTATGTGCA
TCAGGTATCCCATTTGGCGCCCACCTATATGACCGAACAGTTCACCTGCA
CCGTTCAGTATCTGCCCAACGAGGAGGTGGCCCGCGGTAGCGGACCCATC
GGCACCAGTCTGGCCCACTCGACGTCGACGCTGGCCAGTTCTGGATCGAC
CAACACTCTGTCCACGCTCACCACCAACACCAATTCCGTTGCACTCGGCG
GCAGTGGCAAGAAGGCCAAACGACGTTCCACCAGCGGTGGAATCGATGTC
TATGTGCGAGTCTTTCCACACGATTCCCTGGAGCCTGGACTCAAGGTGGC
CAGGGTCACCTCCGAGGCCACACTCAAGTGGATCCTTGTTGGCGCCGTGG
AAGGAATTTTTATGATCTCCAAAATCAACGACACCTCTGTGCGGCTGGAA
ATCGTTGGTCTGCCCAAGGGCTACGAGATGCAGTTTCAGACGGAGAAGGA
GATGAAGTCCTTCATCTCCTACCTGGGTATCTACATCAGATTGTCGAGCA
AATGGATGCAGGATCTGTGCCATTCGTACCGCACGCCCTCCCTGGAGGAG
CTGAGCTCCCTCCACTGCCATGGTCCAATCGGCGGTGCCTACTCGCTGAT
GAAGCTGCACGAGAACGGTGACAAGTGCGGCAGCTATATTGTGCGTGAAT
GCGATCGAGAATACAACATATACTACATCGATATCAACACCAAAATCATG
GCCAAGAAAACCGATCAGGAACGCTGCAAGACGGAGACATTTAGGATCGT
GCGCAAGGACTCGCAATGGAAGCTAAGCTACAACAACGGCGAGCATGTAC
TAAACTCACTGCACGAAGTGGCGCACATCATTCAAGCGGATAGTCCCGAT
CGCTATCGCATACCCGCCTCCAAATATGACAAGCCGCCGCTGCTGCTACT
GCTGCTGCCAAAGAACCTCAAGGCCAAAAAGACTGACCTCCAGCTGAGCG
AGGCGGAGCTGCAGCGCCGCAATCCGCAGATCTTCAATCCCCGAACGGAT
CTGCAGTGGTATCCAGATTCGATATCGCTTAGCGACGATGGCATGATGTT
TACGATGCGCGGCGATTGGATCCAACAGAGTCCCGTCAAGGATGTGTCCG
TGACGATGAAAATGCTAAAGAGCGATGGCAATTTCATGGAGTTCTTTCGC
TTGGCACAGACCTGGAGCCTCATCCAGTCGCCGCAGTTCCTCAAGCTGTA
CGGCCTAACGCTCGCCGATCCGTACACAATGGTCATGGAGTATTCGCGGT
ATGGTCCGCTCAATAAGTTCCTGCACTCGATGCCCAATGTAACACTGCAT
TGTCTACTGGATCTGATGCATGGATTGGTGCGCGGCATGCACTATTTGGA
GGACAACAAGATTATCCACAATTACATACGATGCAGTAATCTGTACGTGA
CCAAGTACGATCCGAATTCGTACGTGCTAGACGCGAAAATTAGCGATCCC
GGCTATCCGCGTCCCTACCGAGAATCCGACTCGCCATGGATACCTGTTAA
GTATTATCGCAATTTGCAAGCAGCCAAAACGGATCAGTTTGCCCAGCTGT
GGGCCTTCGCTACCACCATATACGAGATCTTCTCGCGCTGCAAGGAAGAT
CTGAGCACACTGCGCCAGGAGCAGCTACTCAGGCAGAAAAATCTCGATGG
CAACATACTCAAGATGCTCGATCAGGACATCTGTCCGGCGCCGATATTCG
AGACAATCATGGATGGATGGTCCGATGATGAGACCAAGCGCTTCAGTCAC
CACGACATTTTCTCGCGTCTCAACACGATCAAGGCGGAAATTCTGCCCAA
TTATATGCCGCCACCCGAGATCGCAACGAATGGAACTGGAGACGAGACCG
TGATCGATAGAAGCGACATACCCTTTCTACCCTTTCCGCGTTCGAATATG
TTGATGGTCATACCGCTGACCAGCGAATGTCGAGTGATCTACAACATGGA
GAACATGATCGGGCGCGGTCATTATGGCACTGTCTACAAGGGTCATCTGG
AGTTCAACGACAAGGATCAGCCGCGCGAGCAGGTTGCCATCAAGATGCTG
AACACCATGCAGGTGTCGACCGATTTTCATCGCGAGATCGGCATCATGCG
CACCCTCAGTCATCCGAACATAGTCAAGTTCAAGTATTGGGCTGAGAAGT
CGCACTGCATCATTATGGAATATCTGCAATCTGGTTCCTTCGACATTTAC
CTGCGTTTCACGGCACCCAATCTCAATAATCCACGGCTCGTCAGCTTCGC
TTTAGATATTGCAAATGGCATGAAATACTTGTCCGACATGGGACTCATCC
ACCGCGACCTGGCCGCCCGCAACATTTTGGTGGACCACAACGGCGATGGT
GACTGCGTCAAAATCTCAGACTTCGGCCTGGCGCAATTCGCCAATTCCGA
TGGATATTACTATGCGAAAAGCAAGCGTGATATTCCCATTAGATGGTACT
CTCCGGAGGCCATCTCCACCTGCAGATTCTCATCGTATTCGGATGTTTGG
AGCTATGGCGTGACGCTCTTCGAAATGTTTTCGCGCGGCGAGGAGCCCAA
TTTGGTGCCGATCCAGACATCGCAGGAGGATTTCCTCAATCGCCTTCAGA
GCGGCGAACGCTTAAATCGTCCGGCCAGTTGTCCCGATTTCATTTACGAC
CTGATGCAGCTGTGCTGGCATGCCACGCCCCGTTCGCGACCCAGTTTCGC
GACCATTGTGGACATCATCACAAGGGAGGTGGCCACCAAGGTGACGCACC
CGACAGATGGACACCAGTCGCCGCCGAATCAGCCGACGGATGCCGAGTGA
AAGCTTTCTAGACCAT
BS02952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hop-RA | 3534 | CG1594-PA | 1..3534 | 17..3550 | 17670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hop-RA | 5055 | CG1594-RA | 636..4170 | 16..3550 | 17675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11366401..11367463 | 1078..16 | 5315 | 100 | Minus |
| X | 23542271 | X | 11363961..11364426 | 2229..1764 | 2330 | 100 | Minus |
| X | 23542271 | X | 11362991..11363428 | 3017..2580 | 2190 | 100 | Minus |
| X | 23542271 | X | 11363497..11363846 | 2579..2230 | 1750 | 100 | Minus |
| X | 23542271 | X | 11364484..11364803 | 1766..1447 | 1600 | 100 | Minus |
| X | 23542271 | X | 11365033..11365242 | 1446..1237 | 1050 | 100 | Minus |
| X | 23542271 | X | 11361815..11362005 | 3550..3360 | 955 | 100 | Minus |
| X | 23542271 | X | 11362305..11362486 | 3198..3017 | 910 | 100 | Minus |
| X | 23542271 | X | 11362071..11362236 | 3360..3195 | 830 | 100 | Minus |
| X | 23542271 | X | 11365970..11366132 | 1239..1077 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:46:04 has no hits.
BS02952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:31 Download gff for
BS02952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 636..4168 | 17..3549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:18 Download gff for
BS02952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 637..4169 | 17..3549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:32 Download gff for
BS02952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 637..4169 | 17..3549 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:32 Download gff for
BS02952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11363497..11363846 | 2230..2579 | 100 | <- | Minus |
| X | 11361816..11362004 | 3361..3549 | 100 | <- | Minus |
| X | 11362071..11362235 | 3196..3360 | 100 | <- | Minus |
| X | 11362308..11362486 | 3017..3195 | 100 | <- | Minus |
| X | 11362992..11363428 | 2580..3016 | 100 | <- | Minus |
| X | 11363961..11364423 | 1767..2229 | 100 | <- | Minus |
| X | 11364484..11364803 | 1447..1766 | 100 | <- | Minus |
| X | 11365033..11365239 | 1240..1446 | 100 | <- | Minus |
| X | 11365970..11366130 | 1079..1239 | 100 | <- | Minus |
| X | 11366401..11367462 | 17..1078 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:18 Download gff for
BS02952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11256104..11256268 | 3196..3360 | 100 | <- | Minus |
| arm_X | 11256341..11256519 | 3017..3195 | 100 | <- | Minus |
| arm_X | 11255849..11256037 | 3361..3549 | 100 | <- | Minus |
| arm_X | 11257025..11257461 | 2580..3016 | 100 | <- | Minus |
| arm_X | 11257530..11257879 | 2230..2579 | 100 | <- | Minus |
| arm_X | 11257994..11258456 | 1767..2229 | 100 | <- | Minus |
| arm_X | 11258517..11258836 | 1447..1766 | 100 | <- | Minus |
| arm_X | 11259066..11259272 | 1240..1446 | 100 | <- | Minus |
| arm_X | 11260003..11260163 | 1079..1239 | 100 | <- | Minus |
| arm_X | 11260434..11261495 | 17..1078 | 100 | | Minus |
BS02952.3prime Sequence
731 bp (554 high quality bases) assembled on 2005-11-30
> BS02952.3prime
ATGGTCTAGAAAGCTTTCACTCGGCATCCGTCGGCTGATTCGGCGGCGAC
TGGTGTCCATCTGTCGGGTGCGTCACCTTGGTGGCCACCTCCCTTGTGAT
GATGTCCACAATGGTCGCGAAACTGGGTCGCGAACGGGGCGTGGCATGCC
AGCACAGCTGCATCAGGTCGTAAATGAAATCGGGACAACTGGCCGGACGA
TTTAAGCGTTCGCCGCTCTGAAGGCGATTGAGGAAATCCTCCTGCGATGT
CTGGATCGGCACCAAATTGGGCTCCTCGCCGCGCGAAAACATTTCGAAGA
GCGTCACGCCATAGCTCCAAACATCCGAATACGATGAGAATCTGCAGGTG
GAGATGGCCTCCGGAGAGTACCATCTAATGGGAATATCACGCTTGCTTTT
CGCATAGTAATATCCATCGGAATTGGCGAATTGCGCCAGGCCGAAGTCTG
AGATTTTGACGCAGTCACCATCGCCGTTGTGGTCCACCAAAATGTTGCGG
GCGGCCAGGTCGCGGTGGATGAGTCCCATGTCGGACAAGTATTTCATGCC
ATTTGCAATATCTAAAGCGAAGCTGACGAGCCGTGGATTATTGAGATTGG
GTGCCGTGAAACGCAGGTAAATGTCGAAGGAACCAGATTGCAGATATTCC
ATAATGATGCAGTGCGACTTTCTCAGTCCAATTACTTGAACTTGACTATG
TTCGGATGACTGAGGGTGTGCATTGATGCCA
BS02952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1594-PA | 3534 | hop-RA | 2881..3534 | 670..17 | 3270 | 100 | Minus |
| CG1594-PA | 3534 | hop-RA | 2835..2870 | 718..683 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hop-RA | 5055 | CG1594-RA | 3460..4170 | 730..17 | 3465 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11361815..11362005 | 17..207 | 955 | 100 | Plus |
| X | 23542271 | X | 11362305..11362486 | 369..550 | 910 | 100 | Plus |
| X | 23542271 | X | 11362071..11362236 | 207..372 | 830 | 100 | Plus |
| X | 23542271 | X | 11362991..11363162 | 550..723 | 740 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:33:30 has no hits.
BS02952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:54 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-PA | 2824..3534 | 17..730 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:36 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1594-PA | 2824..3534 | 17..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:27 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 3460..4175 | 11..730 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:51 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 3460..4175 | 11..730 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:51 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11361810..11362004 | 11..206 | 98 | <- | Plus |
| X | 11362071..11362235 | 207..371 | 100 | <- | Plus |
| X | 11362308..11362486 | 372..550 | 100 | <- | Plus |
| X | 11362992..11363168 | 551..730 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:27 Download gff for
BS02952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11255843..11256037 | 11..206 | 98 | <- | Plus |
| arm_X | 11256104..11256268 | 207..371 | 100 | <- | Plus |
| arm_X | 11256341..11256519 | 372..550 | 100 | <- | Plus |
| arm_X | 11257025..11257201 | 551..730 | 97 | | Plus |
BS02952.pep Sequence
Translation from 16 to 3549
> BS02952.pep
MALANGGEDRMDDSSSGRTSLADSASLTNSSLRSGTSSQSIHTNDGTIRV
FNFTTGEFERFHPNMLCEEICNTMCRQLGIAPIAQLLYGIREHSTSRRPS
PLVRLDLTWCLPGERLNCQLVYCFRMRFRVPELDSQLELIDGRSHKFLYR
QMRYDMRTEQIPEIRYPEHKDKSTGLAVMDMLIDDQEQSEDQQAMRSIEK
LYKLYLPPSLWRAHSFFVGSKIREVFRSLKANSLSVERLKWHYVHQVSHL
APTYMTEQFTCTVQYLPNEEVARGSGPIGTSLAHSTSTLASSGSTNTLST
LTTNTNSVALGGSGKKAKRRSTSGGIDVYVRVFPHDSLEPGLKVARVTSE
ATLKWILVGAVEGIFMISKINDTSVRLEIVGLPKGYEMQFQTEKEMKSFI
SYLGIYIRLSSKWMQDLCHSYRTPSLEELSSLHCHGPIGGAYSLMKLHEN
GDKCGSYIVRECDREYNIYYIDINTKIMAKKTDQERCKTETFRIVRKDSQ
WKLSYNNGEHVLNSLHEVAHIIQADSPDRYRIPASKYDKPPLLLLLLPKN
LKAKKTDLQLSEAELQRRNPQIFNPRTDLQWYPDSISLSDDGMMFTMRGD
WIQQSPVKDVSVTMKMLKSDGNFMEFFRLAQTWSLIQSPQFLKLYGLTLA
DPYTMVMEYSRYGPLNKFLHSMPNVTLHCLLDLMHGLVRGMHYLEDNKII
HNYIRCSNLYVTKYDPNSYVLDAKISDPGYPRPYRESDSPWIPVKYYRNL
QAAKTDQFAQLWAFATTIYEIFSRCKEDLSTLRQEQLLRQKNLDGNILKM
LDQDICPAPIFETIMDGWSDDETKRFSHHDIFSRLNTIKAEILPNYMPPP
EIATNGTGDETVIDRSDIPFLPFPRSNMLMVIPLTSECRVIYNMENMIGR
GHYGTVYKGHLEFNDKDQPREQVAIKMLNTMQVSTDFHREIGIMRTLSHP
NIVKFKYWAEKSHCIIMEYLQSGSFDIYLRFTAPNLNNPRLVSFALDIAN
GMKYLSDMGLIHRDLAARNILVDHNGDGDCVKISDFGLAQFANSDGYYYA
KSKRDIPIRWYSPEAISTCRFSSYSDVWSYGVTLFEMFSRGEEPNLVPIQ
TSQEDFLNRLQSGERLNRPASCPDFIYDLMQLCWHATPRSRPSFATIVDI
ITREVATKVTHPTDGHQSPPNQPTDAE*
BS02952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hop-PA | 1177 | CG1594-PA | 1..1177 | 1..1177 | 6239 | 100 | Plus |
| Eph-PF | 1005 | CG1511-PF | 710..966 | 894..1151 | 436 | 39.2 | Plus |
| Eph-PB | 1047 | CG1511-PB | 694..950 | 894..1151 | 436 | 39.2 | Plus |
| Eph-PE | 1080 | CG1511-PE | 727..983 | 894..1151 | 436 | 39.2 | Plus |
| Eph-PD | 1080 | CG1511-PD | 743..999 | 894..1151 | 436 | 39.2 | Plus |
