Clone BS03013 Report

Search the DGRC for BS03013

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:30
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptEct3-RA
Protein status:BS03013.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03013.5prime Sequence

823 bp (753 high quality bases) assembled on 2005-11-30

> BS03013.5prime
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGGTCATGCGGAATACTATC
CCCGGTGGGCTAACTCACTGGAC

BS03013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3132-PA 1914 Ect3-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2236 CG3132-RA 164..969 17..823 3950 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12001776..12002145 453..823 1745 98.7 Plus
3R 32079331 3R 12001210..12001430 17..237 1105 100 Plus
3R 32079331 3R 12001482..12001701 233..452 1085 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 22:53:53 has no hits.

BS03013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:59 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-PA 1..806 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:43 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3132-PA 1..806 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:56:37 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 154..969 7..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:18 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 154..969 7..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:18 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12001208..12001430 14..237 99 -> Plus
3R 12001487..12001701 238..452 100 -> Plus
3R 12001776..12002145 453..823 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:56:37 Download gff for BS03013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7826930..7827152 14..237 99 -> Plus
arm_3R 7827209..7827423 238..452 100 -> Plus
arm_3R 7827498..7827867 453..823 98   Plus

BS03013.complete Sequence

1946 bp assembled on 2008-01-02

GenBank Submission: FJ634689

> BS03013.complete
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGCCGATGGCCAATGTTAGCACCCAA
TCGATTACTTCCACTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAA
CTTCTACATGTTCTACGGCGGCACCAACTTCGGATTCACAGCTGGTGCCA
ATGACATTGGACCCGGAAACTACATGGCTGACATTACCAGCTACGACTAC
GATGCACCCATGACGGAGGCGGGGGATCCCACTCCCAAATACCAGGCCCT
GCGACGCATCATTGGCCGCTATCTCCCGCTGCCAAATCAACCCGTGCCCG
GACCCGTACCCAAGCGATCCTACGGAACTGTGCGTCTGACCACCTGCTGT
AGTCTGCTTTCGTCGGAGGCTCGATCTCGTCTCTCCACTGGATTTGTGCA
GTCCGCCAAGCCGAAGAGCTTCGAGGCTTTGGGACAGTACTCTGGTTTGG
TGCTCTACGAGACCTGGTTGCCCAGCTTCCAGCGGGATCCGAGCATCCTT
AGCGTTCCCGGACTGGCGGATCGAGGTTACGTTTATGTGGATGGTGAGTT
CGTGGGTATTCTGGCCAGGGAAACCCCCGTGTTCGAATTGCCACTCAGTG
CAAGTGCCGGGCGGAGGTTCCAGATTATCGTAGAGAACCAGGGTCGCATC
AACTACGGTCGACAGTTGAACGATTTTAAGGGCATCCTGCGGGATGTTCG
ACTGGACAAGCAGGTGCTGAGCAACTGGAACATGACCCAATTCCCACTCG
AATCGTACGACAACCTGGAGCAGCTGATTACCCAGTCGGATGAGGCAGTT
CGTCAGGGCTTCCAGGAGCTAAAGAAGTTGCGCACAATGCTGCGCACTGG
TCCCGCCATTTACCACGGTCAACTGGACATCCAAAAGGAATCTGATCTGG
CGGACACCTATCTGGACATGTCCGGCTGGGGCAAGGGCATTGTCTTTGTG
AATGGCGAAAATCTCGGCAGGTATTGGCCCCTGGTGGGACCTCAAGTCAC
CCTGTATGTTCCGGCCGCCGTGCTCAAGGCGGGCTCAAATCGACTGGTGG
TGGTGGAGTATCAGCAGACACCCGCCTCACAGGAGCTGCACTTCCGAGAT
ACCCCCATTCTGAACGCGAGGACCGTTTAGAAGCTTTCTAGACCAT

BS03013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 1914 CG3132-PA 1..1914 17..1930 9570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2236 CG3132-RA 164..2077 17..1930 9570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12002298..12003357 871..1930 5300 100 Plus
3R 32079331 3R 12001776..12002193 453..870 2090 100 Plus
3R 32079331 3R 12001210..12001430 17..237 1105 100 Plus
3R 32079331 3R 12001482..12001701 233..452 1085 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 08:21:41 has no hits.

BS03013.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:56 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 17..1930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:55 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 135..2048 17..1930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:50 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 164..2077 17..1930 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:56 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 125..2048 7..1930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:46 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 164..2077 17..1930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:46 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12001487..12001701 238..452 100 -> Plus
3R 12001210..12001430 17..237 100 -> Plus
3R 12001776..12002193 453..870 100 -> Plus
3R 12002298..12003357 871..1930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:50 Download gff for BS03013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7826932..7827152 17..237 100 -> Plus
arm_3R 7827209..7827423 238..452 100 -> Plus
arm_3R 7827498..7827915 453..870 100 -> Plus
arm_3R 7828020..7829079 871..1930 100   Plus

BS03013.pep Sequence

Translation from 16 to 1929

> BS03013.pep
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTV*

BS03013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-PA 637 CG3132-PA 1..637 1..637 3388 100 Plus
Gal-PA 672 CG9092-PA 23..641 1..617 1624 52 Plus
Gal-PB 670 CG9092-PB 44..639 24..617 1622 53.1 Plus