Clone Sequence Records
BS03013.5prime Sequence
823 bp (753 high quality bases) assembled on 2005-11-30
> BS03013.5prime
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGGTCATGCGGAATACTATC
CCCGGTGGGCTAACTCACTGGAC
BS03013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3132-PA | 1914 | Ect3-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 2236 | CG3132-RA | 164..969 | 17..823 | 3950 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12001776..12002145 | 453..823 | 1745 | 98.7 | Plus |
3R | 32079331 | 3R | 12001210..12001430 | 17..237 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 12001482..12001701 | 233..452 | 1085 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:53:53 has no hits.
BS03013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:19:59 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-PA | 1..806 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:43 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3132-PA | 1..806 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:56:37 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 154..969 | 7..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:18 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 154..969 | 7..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:18 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12001208..12001430 | 14..237 | 99 | -> | Plus |
3R | 12001487..12001701 | 238..452 | 100 | -> | Plus |
3R | 12001776..12002145 | 453..823 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:56:37 Download gff for
BS03013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7826930..7827152 | 14..237 | 99 | -> | Plus |
arm_3R | 7827209..7827423 | 238..452 | 100 | -> | Plus |
arm_3R | 7827498..7827867 | 453..823 | 98 | | Plus |
BS03013.complete Sequence
1946 bp assembled on 2008-01-02
GenBank Submission: FJ634689
> BS03013.complete
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGCCGATGGCCAATGTTAGCACCCAA
TCGATTACTTCCACTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAA
CTTCTACATGTTCTACGGCGGCACCAACTTCGGATTCACAGCTGGTGCCA
ATGACATTGGACCCGGAAACTACATGGCTGACATTACCAGCTACGACTAC
GATGCACCCATGACGGAGGCGGGGGATCCCACTCCCAAATACCAGGCCCT
GCGACGCATCATTGGCCGCTATCTCCCGCTGCCAAATCAACCCGTGCCCG
GACCCGTACCCAAGCGATCCTACGGAACTGTGCGTCTGACCACCTGCTGT
AGTCTGCTTTCGTCGGAGGCTCGATCTCGTCTCTCCACTGGATTTGTGCA
GTCCGCCAAGCCGAAGAGCTTCGAGGCTTTGGGACAGTACTCTGGTTTGG
TGCTCTACGAGACCTGGTTGCCCAGCTTCCAGCGGGATCCGAGCATCCTT
AGCGTTCCCGGACTGGCGGATCGAGGTTACGTTTATGTGGATGGTGAGTT
CGTGGGTATTCTGGCCAGGGAAACCCCCGTGTTCGAATTGCCACTCAGTG
CAAGTGCCGGGCGGAGGTTCCAGATTATCGTAGAGAACCAGGGTCGCATC
AACTACGGTCGACAGTTGAACGATTTTAAGGGCATCCTGCGGGATGTTCG
ACTGGACAAGCAGGTGCTGAGCAACTGGAACATGACCCAATTCCCACTCG
AATCGTACGACAACCTGGAGCAGCTGATTACCCAGTCGGATGAGGCAGTT
CGTCAGGGCTTCCAGGAGCTAAAGAAGTTGCGCACAATGCTGCGCACTGG
TCCCGCCATTTACCACGGTCAACTGGACATCCAAAAGGAATCTGATCTGG
CGGACACCTATCTGGACATGTCCGGCTGGGGCAAGGGCATTGTCTTTGTG
AATGGCGAAAATCTCGGCAGGTATTGGCCCCTGGTGGGACCTCAAGTCAC
CCTGTATGTTCCGGCCGCCGTGCTCAAGGCGGGCTCAAATCGACTGGTGG
TGGTGGAGTATCAGCAGACACCCGCCTCACAGGAGCTGCACTTCCGAGAT
ACCCCCATTCTGAACGCGAGGACCGTTTAGAAGCTTTCTAGACCAT
BS03013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 1914 | CG3132-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 2236 | CG3132-RA | 164..2077 | 17..1930 | 9570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12002298..12003357 | 871..1930 | 5300 | 100 | Plus |
3R | 32079331 | 3R | 12001776..12002193 | 453..870 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 12001210..12001430 | 17..237 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 12001482..12001701 | 233..452 | 1085 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:21:41 has no hits.
BS03013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:56 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 1..1914 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:55 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 135..2048 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:50 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 164..2077 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:56 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 125..2048 | 7..1930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:46 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 164..2077 | 17..1930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:46 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12001487..12001701 | 238..452 | 100 | -> | Plus |
3R | 12001210..12001430 | 17..237 | 100 | -> | Plus |
3R | 12001776..12002193 | 453..870 | 100 | -> | Plus |
3R | 12002298..12003357 | 871..1930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:50 Download gff for
BS03013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7826932..7827152 | 17..237 | 100 | -> | Plus |
arm_3R | 7827209..7827423 | 238..452 | 100 | -> | Plus |
arm_3R | 7827498..7827915 | 453..870 | 100 | -> | Plus |
arm_3R | 7828020..7829079 | 871..1930 | 100 | | Plus |
BS03013.pep Sequence
Translation from 16 to 1929
> BS03013.pep
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTV*
BS03013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-PA | 637 | CG3132-PA | 1..637 | 1..637 | 3388 | 100 | Plus |
Gal-PA | 672 | CG9092-PA | 23..641 | 1..617 | 1624 | 52 | Plus |
Gal-PB | 670 | CG9092-PB | 44..639 | 24..617 | 1622 | 53.1 | Plus |