Clone Sequence Records
BS03015.3prime Sequence
763 bp (644 high quality bases) assembled on 2005-11-30
> BS03015.3prime
ATGGTCTAGAAAGCTTCTACTTTCCCGCCTTGGCCTTCTTCTCGTTCTCG
GAGGTGATCTTGTTCTTCAGATGATCCTTGTAGTCCAGAATGCCGCCCTT
CCACTTGGTTACCGTCTCCTTTTCGCATACCCAAATCTCCTCAGCCACCT
GATTAATCAGACGGAAATCGTGACTAACTAGCACCATGCCGCCATCGAAA
TCGTTGATCGCATCCGCGAGCGCATCGATTGTCTCCATGTCCAAGTGATT
GGTGGGTTCGTCAAGTAGCAGAAGATGGGGCACCTGCCAGGCGAGCCAGG
CGAACACCACGCGGCACCGCTGGCCATCGGAGAGCTGGCGAATCGGACAC
ACCTGCTGGCGACCAGTGAGGCCGTAGCGACCAATAATCTTGCGCATCTC
CTCCTTCTCCTTGACGTCAGGGAAGGCACGCATCATGTACTCTAGCGGAC
TGGCATCCAAATCGAGCAGCTCGTGCAGATGCTGGTGGTAGCGGGCGATG
CGCAGATGGGAGTTCTTGCGGATCATGCCGGAGGTGGGCACCAGATCGCC
ATAAAGCAGCTTCAGCAACGTGGACTTGCCAGCTCCGTTGGGTCCAACCA
AAGCGAGACGTGTGTCTAGATCAATTCCGAACTCCAGATTTTTGTAGATC
CACGGTGTCCTCATCGTTGTATTCGGAAATTCACGTTCTGAACCATAATC
ACGGGTGGCGGGCCCCTTGCCGCACGATGGGGAAGTAAAAGTTGAGCACC
TTATCGTCGGACA
BS03015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PB | 1836 | CG9281-RB | 1194..1836 | 659..17 | 3215 | 100 | Minus |
| CG9281-PC | 1836 | CG9281-RC | 1194..1836 | 659..17 | 3215 | 100 | Minus |
| CG9281-PB | 1836 | CG9281-RB | 1144..1182 | 711..673 | 195 | 100 | Minus |
| CG9281-PC | 1836 | CG9281-RC | 1144..1182 | 711..673 | 195 | 100 | Minus |
| CG9281-PB | 1836 | CG9281-RB | 1094..1127 | 763..730 | 170 | 100 | Minus |
| CG9281-PC | 1836 | CG9281-RC | 1094..1127 | 763..730 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 1336..2079 | 763..16 | 3625 | 99.3 | Minus |
| CG9281-RC | 3033 | CG9281-RC | 1164..1907 | 763..16 | 3625 | 99.3 | Minus |
| CG9281-RB | 3205 | CG9281-RB | 1336..2079 | 763..16 | 3625 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15707127..15707667 | 147..689 | 2615 | 99.6 | Plus |
| X | 23542271 | X | 15706932..15707067 | 16..151 | 680 | 100 | Plus |
| X | 23542271 | X | 15707733..15707806 | 688..763 | 265 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:33:03 has no hits.
BS03015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:00 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PB | 1095..1836 | 17..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:44 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PC | 1095..1836 | 17..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:25 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 1337..2085 | 9..762 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:20 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 1337..2085 | 9..762 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:20 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15706926..15707064 | 9..148 | 97 | <- | Plus |
| X | 15707129..15707665 | 149..687 | 99 | <- | Plus |
| X | 15707733..15707805 | 688..762 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:25 Download gff for
BS03015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15600959..15601097 | 9..148 | 97 | <- | Plus |
| arm_X | 15601162..15601698 | 149..687 | 99 | <- | Plus |
| arm_X | 15601766..15601838 | 688..762 | 96 | | Plus |
BS03015.5prime Sequence
627 bp (512 high quality bases) assembled on 2005-11-30
> BS03015.5prime
GAAGTTATCAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGA
AGAAGAAGGATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAG
AAGGCCAATGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTG
CGCCAAGCTGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCA
CCGGATCGCTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAAC
TTTTCGATCACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGA
GTTGAATTGCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTA
AGTCCTCGCTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCG
CACATCGACATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAG
TGCGCTGCAGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGA
AGCTGGCCGAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAG
CTGATCGACATCTTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAG
AGGTCAAGGCGGCCCGCATCCTTCACG
BS03015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PB | 1836 | CG9281-RB | 1..547 | 17..563 | 2735 | 100 | Plus |
| CG9281-PC | 1836 | CG9281-RC | 1..547 | 17..563 | 2735 | 100 | Plus |
| CG9281-PB | 1836 | CG9281-RB | 547..610 | 564..627 | 320 | 100 | Plus |
| CG9281-PC | 1836 | CG9281-RC | 547..610 | 564..627 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..852 | 17..627 | 3030 | 99.8 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..680 | 17..627 | 3030 | 99.8 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..852 | 17..627 | 3030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708365..15708974 | 627..17 | 3005 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:41:33 has no hits.
BS03015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:01 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PB | 1..610 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:32:46 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PC | 1..610 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:51:19 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..852 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:25 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..852 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:25 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15708365..15708974 | 17..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:51:19 Download gff for
BS03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15602398..15603007 | 17..627 | 99 | | Minus |
BS03015.complete Sequence
1868 bp assembled on 2008-01-02
GenBank Submission: FJ634690
> BS03015.complete
GAAGTTATCAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGA
AGAAGAAGGATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAG
AAGGCCAATGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTG
CGCCAAGCTGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCA
CCGGATCGCTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAAC
TTTTCGATCACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGA
GTTGAATTGCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTA
AGTCCTCGCTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCG
CACATCGACATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAG
TGCGCTGCAGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGA
AGCTGGCCGAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAG
CTGATCGACATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGA
GGTCAAGGCGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGC
AACAGAAACAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCC
TTGGCCCGCGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCC
GACGAATCACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTA
AGACATACAAGCGAATCCTGGTGCTCATCTCGCACTCGCAGGATTTCCTC
AACGGTGTCTGCACAAACATCATTCACCTGACGGGCAAGCGACTCAAGTA
CTATACGGGTAACTATGAGGCCTTTGTGCGCACACGCATGGAACTGCTGG
AAAACCAGATGAAGCAGTACAACTGGGAACAGGACCAGATTTCGCACATG
AAGAACTACATTGCTCGATTCGGTCACGGTTCCGCCAAGTTGGCGCGACA
GGCGCAGTCCAAGGAGAAGACGCTGGCCAAGATGGTTGCTCAGGGACTCA
CAGAGAAGGTGTCCGACGATAAGGTGCTCAACTTTTACTTCCCATCGTGC
GGCAAGGTGCCGCCACCCGTGATTATGGTTCAGAACGTGAATTTCCGATA
CAACGATGAGACACCGTGGATCTACAAAAATCTGGAGTTCGGAATTGATC
TAGACACACGTCTCGCTTTGGTTGGACCCAACGGAGCTGGCAAGTCCACG
TTGCTGAAGCTGCTTTATGGCGATCTGGTGCCCACCTCCGGCATGATCCG
CAAGAACTCCCATCTGCGCATCGCCCGCTACCACCAGCATCTGCACGAGC
TGCTCGATTTGGATGCCAGTCCGCTAGAGTACATGATGCGTGCCTTCCCT
GACGTCAAGGAGAAGGAGGAGATGCGCAAGATTATTGGTCGCTACGGCCT
CACTGGTCGCCAGCAGGTGTGTCCGATTCGCCAGCTCTCCGATGGCCAGC
GGTGCCGCGTGGTGTTCGCCTGGCTCGCCTGGCAGGTGCCCCATCTTCTG
CTACTTGACGAACCCACCAATCACTTGGACATGGAGACAATCGATGCGCT
CGCGGATGCGATCAACGATTTCGATGGCGGCATGGTGCTAGTTAGTCACG
ATTTCCGTCTGATTAATCAGGTGGCTGAGGAGATTTGGGTATGCGAAAAG
GAGACGGTAACCAAGTGGAAGGGCGGCATTCTGGACTACAAGGATCATCT
GAAGAACAAGATCACCTCCGAGAACGAGAAGAAGGCCAAGGCGGGAAAGT
AGAAGCTTTCTAGACCAT
BS03015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 1836 | CG9281-PD | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG9281-RC | 1836 | CG9281-PC | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG9281-RB | 1836 | CG9281-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..2079 | 17..1853 | 9185 | 100 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1907 | 17..1853 | 9185 | 100 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..2079 | 17..1853 | 9185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 680..17 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707127..15707667 | 1722..1182 | 2705 | 100 | Minus |
| X | 23542271 | X | 15707733..15708241 | 1183..675 | 2545 | 100 | Minus |
| X | 23542271 | X | 15706932..15707067 | 1853..1718 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:53 has no hits.
BS03015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:57 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 1..1836 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:40 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1906 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:44 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..2078 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:03:57 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1913 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:56 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..2078 | 17..1852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:56 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15706933..15707064 | 1721..1852 | 100 | <- | Minus |
| X | 15707129..15707665 | 1184..1720 | 100 | <- | Minus |
| X | 15707733..15708238 | 678..1183 | 100 | <- | Minus |
| X | 15708314..15708974 | 17..677 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:44 Download gff for
BS03015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15600966..15601097 | 1721..1852 | 100 | <- | Minus |
| arm_X | 15601162..15601698 | 1184..1720 | 100 | <- | Minus |
| arm_X | 15601766..15602271 | 678..1183 | 100 | <- | Minus |
| arm_X | 15602347..15603007 | 17..677 | 100 | | Minus |
BS03015.pep Sequence
Translation from 16 to 1851
> BS03015.pep
MSSAAKKREAQKKKDARNKKIQQIPSTKKANGVPERELTEEEKLCAKLEE
EARISAEARSCTGSLAVHPRSRDVKIANFSITFFGSELLQDTMLELNCGR
RYGLIGLNGCGKSSLLAVLGGREVPVPPHIDIFHLTREIPASSKSALQCV
MEVDEERIKLEKLAEELAMSEEDDAQEQLIDIYERLDDMSADLAEVKAAR
ILHGLGFDKAMQQKQAKDFSGGWRMRIALARALFVKPHLLLLDEPTNHLD
LDACVWLEEELKTYKRILVLISHSQDFLNGVCTNIIHLTGKRLKYYTGNY
EAFVRTRMELLENQMKQYNWEQDQISHMKNYIARFGHGSAKLARQAQSKE
KTLAKMVAQGLTEKVSDDKVLNFYFPSCGKVPPPVIMVQNVNFRYNDETP
WIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSHL
RIARYHQHLHELLDLDASPLEYMMRAFPDVKEKEEMRKIIGRYGLTGRQQ
VCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAIN
DFDGGMVLVSHDFRLINQVAEEIWVCEKETVTKWKGGILDYKDHLKNKIT
SENEKKAKAGK*
BS03015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PD | 611 | CG9281-PD | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG9281-PC | 611 | CG9281-PC | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG9281-PB | 611 | CG9281-PB | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG1703-PB | 901 | CG1703-PB | 287..884 | 2..599 | 1059 | 37.1 | Plus |
| CG9330-PA | 708 | CG9330-PA | 91..708 | 9..603 | 1055 | 38.5 | Plus |
