Clone BS03047 Report

Search the DGRC for BS03047

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:30
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptaru-RC
Protein status:BS03047.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03047.3prime Sequence

764 bp (648 high quality bases) assembled on 2005-11-30

> BS03047.3prime
ATGGTCTAGAAAGCTTCTAGAAGTAGCGGAACTCGCCCTTCTTGCCCAGA
TGCTTGCTGCGCATCATGTCGGTGGGATCCGGCGATCGCTGTTCCATGCC
GGGATTATCCCCTGATCGCGATTTGTTGCCCGGACCTGTGGGACCCGTCG
GTGGCTGCTGCTGTTGCCCGTAGAACTGGGCTCCATCTCCATCCCCGAAA
TTGAAGGGGGTTACAATCGTGTGCGGCACGTGGGCCACCTGACCCCGCAT
GTTGCGCGCCTTCCACCACTTTCGGGTATCATCAAGGATCTCCAAGTATT
CGCCTCGCATCACGCTAAGCTCCTTGTCGTTGTTGGCGGTTCGCGGATAG
GTGACCAGCACAATCTTAGCGCCCGTCGCCTGCAGATCCTCCAGCCAGGA
CTCGAGCATCTGGTCGTCGCTGACATTCGGCAGGCCTCTGCCTCCACCGC
CCAACTCCGACGAAGGCCCCGGACCAGCTCCTGCTCCGTACCCGTTTCCA
CTGCGAGATTCCCTCGTATGCAGATTCTGCAGACCAGCTGTGATGGCGCT
AAGGGTTGGTCCAGCTCCTGGTCCGTGGCCATGACCATGGCCATGTCCCG
CTGCTCCGCCGCCCCTGCCTTTCGATCGAGTCGAACGACAGCTCGCTGCG
GGCGTTAAAAGTCAAGACGCACTGATTGCGCCCGCCCGCTCTCTGTCGCG
CTCCCTTTCCGCTCCCTTAAACCGTCGTTGCCGTGGGGGATGGGGTACTT
TCTCGATACCCTTG

BS03047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4276-PA 2418 aru-RA 1814..2418 621..17 3025 100 Minus
CG4276-PD 2337 aru-RD 1733..2337 621..17 3025 100 Minus
CG4276-PC 2337 aru-RC 1733..2337 621..17 3025 100 Minus
CG4276-PA 2418 aru-RA 1728..1773 710..665 230 100 Minus
CG4276-PD 2337 aru-RD 1647..1692 710..665 230 100 Minus
CG4276-PC 2337 aru-RC 1647..1692 710..665 230 100 Minus
CG4276-PA 2418 aru-RA 1777..1815 659..621 195 100 Minus
CG4276-PD 2337 aru-RD 1696..1734 659..621 195 100 Minus
CG4276-PC 2337 aru-RC 1696..1734 659..621 195 100 Minus
CG4276-PA 2418 aru-RA 1687..1728 750..709 160 95.2 Minus
CG4276-PD 2337 aru-RD 1606..1647 750..709 160 95.2 Minus
CG4276-PC 2337 aru-RC 1606..1647 750..709 160 95.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
aru-RC 2903 CG4276-RC 1845..2586 761..17 3575 99.1 Minus
aru-RD 3026 CG4276-RD 1968..2709 761..17 3575 99.1 Minus
aru-RA 2922 CG4276-RA 1864..2605 761..17 3575 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 862563..863031 290..761 2085 98.5 Plus
2L 23513712 2L 862318..862500 109..291 915 100 Plus
2L 23513712 2L 862166..862259 17..110 470 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:17:31 has no hits.

BS03047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:28 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
aru-PA 1674..2418 17..764 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:22 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4276-PD 1593..2337 17..764 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:01 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
aru-RA 1861..2605 17..764 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:56 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
aru-RA 1861..2605 17..764 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:56 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 862166..862258 17..109 100 <- Plus
2L 862319..862498 110..289 100 <- Plus
2L 862563..863034 290..764 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:01 Download gff for BS03047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 862166..862258 17..109 100 <- Plus
arm_2L 862319..862498 110..289 100 <- Plus
arm_2L 862563..863034 290..764 98   Plus

BS03047.5prime Sequence

700 bp (549 high quality bases) assembled on 2005-11-30

> BS03047.5prime
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGTTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG

BS03047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4276-PA 2418 aru-RA 81..765 16..700 3400 99.8 Plus
CG4276-PD 2337 aru-RD 1..684 17..700 3395 99.8 Plus
CG4276-PC 2337 aru-RC 1..684 17..700 3395 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
aru-RC 2903 CG4276-RC 249..933 16..700 3410 99.9 Plus
aru-RD 3026 CG4276-RD 372..1056 16..700 3410 99.9 Plus
aru-RA 2922 CG4276-RA 268..952 16..700 3410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 864398..864746 364..16 1745 100 Minus
2L 23513712 2L 863943..864137 700..506 960 99.5 Minus
2L 23513712 2L 864195..864339 508..364 725 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:20:11 has no hits.

BS03047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:29 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
aru-PA 75..765 10..700 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:24 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4276-PA 75..765 10..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:33 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
aru-RA 262..952 10..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:04 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
aru-RA 262..952 10..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:04 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 863943..864134 509..700 99 <- Minus
2L 864195..864338 365..508 100 <- Minus
2L 864398..864752 10..364 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:33 Download gff for BS03047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 863943..864134 509..700 99 <- Minus
arm_2L 864195..864338 365..508 100 <- Minus
arm_2L 864398..864752 10..364 99   Minus

BS03047.complete Sequence

2369 bp assembled on 2008-01-02

GenBank Submission: FJ634691

> BS03047.complete
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGCTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG
CAGCGGGCAGAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAG
CCACCATCACATGCACCAAAGGAGCAGCATGGAACAGTATGGAATCCGTG
CCGGAGTAGGAGTTTCTGGCGATGACGTTGCCCACATTAGTGGCGAGACG
GATTCGGAACACGGTGGGATTGGGGGCGGTGGCGCAACGGAGCGCGATGA
GACTAGCTCCACGTCCAGCGAGAAGTACGAGCGGGATGTGGCTGTGCTGA
ATCACTGTTTCGATGACATCGAGAAGTTCATAGCTCGTCTTCAGCACGCC
GCCGCCGCTTCCCGGGAGCTCGAGCGCCGTCGTCGCAATCGGAAGTCGAA
GAAAAGGGATCCGGGGGAGGGATTGCTCACTTTGAGGACACGGCCTCCCC
ACGAGAAGGAGTTCGTGGACATCTTTGCCAAGTTTAAGCTGTCATTTAAC
CTGCTGGCAAAGTTGAAGGCGCACATCCACGATCCCAACGCTCCCGAACT
GGTGCATTTCCTCTTCACGCCGCTGGCTCTGATTGTGGAGGCCTCCAGCG
ACACGTACTACGAGTCACAGCTACCGGCCCGTGTGGTTAATCCCCTGCTG
ACCAGAGAGGCCATCAACCTGCTCATCAACTGTGTAACCAGCAAGGAAAC
GGAGCTGTGGCGCTCGTTGGGCGATGCCTGGGTGATCCCGCGAGATCAGT
GGAAGGATGACGTTGGATCCTACCATCCGGTCTTCCTCGATGGCTGGTCA
CCGGACTATTTGATCAACGATGAACTGGAGCCACCACCAAATTCCCCGCC
CGCTCATGTGAGCAAGCGCAGACTCGAGGTCCAGGCTGGATCCGGACTAA
ATGGTCGTGGGGGAGGCGGATACGATGACTACGACTCGGGGAACGGGATG
AACATGGCCATGGGTATCGAGAAGTACACCATCCACCACGGCAACGACGG
TTTAAGGGAGCGGGAAAGGGAGCGCGACAGAGAGCGGGCGGGCGCAATCA
GTGCGTCTGACTTTAACGCCCGCAGCGAGCTGTCGTTCGACTCGATCGAA
GGCAGGGGCGGCGGAGCAGCGGGACATGGCCATGGTCATGGCCACGGACC
AGGAGCTGGACCAACCCTTAGCGCCATCACAGCTGGTCTGCAGAATCTGC
ATACGAGGGAATCTCGCAGTGGAAACGGGTACGGAGCAGGAGCTGGTCCG
GGGCCTTCGTCGGAGTTGGGCGGTGGAGGCAGAGGCCTGCCGAATGTCAG
CGACGACCAGATGCTCGAGTCCTGGCTGGAGGATCTGCAGGCGACGGGCG
CTAAGATTGTGCTGGTCACCTATCCGCGAACCGCCAACAACGACAAGGAG
CTTAGCGTGATGCGAGGCGAATACTTGGAGATCCTTGATGATACCCGAAA
GTGGTGGAAGGCGCGCAACATGCGGGGTCAGGTGGCCCACGTGCCGCACA
CGATTGTAACCCCCTTCAATTTCGGGGATGGAGATGGAGCCCAGTTCTAC
GGGCAACAGCAGCAGCCACCGACGGGTCCCACAGGTCCGGGCAACAAATC
GCGATCAGGGGATAATCCCGGCATGGAACAGCGATCGCCGGATCCCACCG
ACATGATGCGCAGCAAGCATCTGGGCAAGAAGGGCGAGTTCCGCTACTTC
TAGAAGCTTTCTAGACCAT

BS03047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
aru-RA 2418 CG4276-PA 81..2418 16..2353 11690 100 Plus
aru-RC 2337 CG4276-PC 1..2337 17..2353 11685 100 Plus
aru-RD 2337 CG4276-PD 1..2337 17..2353 11685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
aru-RC 2903 CG4276-RC 249..2586 16..2353 11690 100 Plus
aru-RD 3026 CG4276-RD 372..2709 16..2353 11690 100 Plus
aru-RA 2922 CG4276-RA 268..2605 16..2353 11690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 862563..864137 2080..506 7875 100 Minus
2L 23513712 2L 864398..864746 364..16 1745 100 Minus
2L 23513712 2L 862318..862500 2261..2079 915 100 Minus
2L 23513712 2L 864195..864339 508..364 725 100 Minus
2L 23513712 2L 862166..862259 2353..2260 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:53:06 has no hits.

BS03047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:00 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
aru-RA 75..2418 10..2353 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:16 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
aru-RC 250..2586 17..2353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:15 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
aru-RA 269..2605 17..2353 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:00 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
aru-RC 243..2586 10..2353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:06 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
aru-RA 269..2605 17..2353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:06 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
2L 864398..864745 17..364 100   Minus
2L 862166..862258 2261..2353 100 <- Minus
2L 862319..862498 2081..2260 100 <- Minus
2L 862563..864134 509..2080 100 <- Minus
2L 864195..864338 365..508 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:15 Download gff for BS03047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 862166..862258 2261..2353 100 <- Minus
arm_2L 862319..862498 2081..2260 100 <- Minus
arm_2L 862563..864134 509..2080 100 <- Minus
arm_2L 864195..864338 365..508 100 <- Minus
arm_2L 864398..864745 17..364 100   Minus

BS03047.pep Sequence

Translation from 16 to 2352

> BS03047.pep
MVNHHSNGGGSAGNSSGSLRGGGAHGGGGGGGDYSGDDRSGGGEERERLE
SDLHDKPTYLLEHLATFTVNKESGIVYPADGMRRLLQLEKTTGIWSQKMQ
LCLDYQWVLIMDYETGNIIERFPASLVQEPTAFTSNDAMELYNNILVFIV
SGGGGSRSEMHIFQSQSVSAVHLVEDLKQLRSGKMITQQRGATPTQSGGG
GASSMAMMMSKTSSSSSHSRVELHQHREQRAERERERDRDRERESHHHMH
QRSSMEQYGIRAGVGVSGDDVAHISGETDSEHGGIGGGGATERDETSSTS
SEKYERDVAVLNHCFDDIEKFIARLQHAAAASRELERRRRNRKSKKRDPG
EGLLTLRTRPPHEKEFVDIFAKFKLSFNLLAKLKAHIHDPNAPELVHFLF
TPLALIVEASSDTYYESQLPARVVNPLLTREAINLLINCVTSKETELWRS
LGDAWVIPRDQWKDDVGSYHPVFLDGWSPDYLINDELEPPPNSPPAHVSK
RRLEVQAGSGLNGRGGGGYDDYDSGNGMNMAMGIEKYTIHHGNDGLRERE
RERDRERAGAISASDFNARSELSFDSIEGRGGGAAGHGHGHGHGPGAGPT
LSAITAGLQNLHTRESRSGNGYGAGAGPGPSSELGGGGRGLPNVSDDQML
ESWLEDLQATGAKIVLVTYPRTANNDKELSVMRGEYLEILDDTRKWWKAR
NMRGQVAHVPHTIVTPFNFGDGDGAQFYGQQQQPPTGPTGPGNKSRSGDN
PGMEQRSPDPTDMMRSKHLGKKGEFRYF*

BS03047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
aru-PC 778 CG4276-PC 1..778 1..778 4126 100 Plus
aru-PD 778 CG4276-PD 1..778 1..778 4126 100 Plus
aru-PA 805 CG4276-PA 28..805 1..778 4126 100 Plus
CG8907-PA 712 CG8907-PA 24..377 56..487 705 39.1 Plus
CG8907-PB 732 CG8907-PB 44..397 56..487 705 39.1 Plus
CG8907-PA 712 CG8907-PA 407..477 652..722 233 54.9 Plus