Clone Sequence Records
BS03047.3prime Sequence
764 bp (648 high quality bases) assembled on 2005-11-30
> BS03047.3prime
ATGGTCTAGAAAGCTTCTAGAAGTAGCGGAACTCGCCCTTCTTGCCCAGA
TGCTTGCTGCGCATCATGTCGGTGGGATCCGGCGATCGCTGTTCCATGCC
GGGATTATCCCCTGATCGCGATTTGTTGCCCGGACCTGTGGGACCCGTCG
GTGGCTGCTGCTGTTGCCCGTAGAACTGGGCTCCATCTCCATCCCCGAAA
TTGAAGGGGGTTACAATCGTGTGCGGCACGTGGGCCACCTGACCCCGCAT
GTTGCGCGCCTTCCACCACTTTCGGGTATCATCAAGGATCTCCAAGTATT
CGCCTCGCATCACGCTAAGCTCCTTGTCGTTGTTGGCGGTTCGCGGATAG
GTGACCAGCACAATCTTAGCGCCCGTCGCCTGCAGATCCTCCAGCCAGGA
CTCGAGCATCTGGTCGTCGCTGACATTCGGCAGGCCTCTGCCTCCACCGC
CCAACTCCGACGAAGGCCCCGGACCAGCTCCTGCTCCGTACCCGTTTCCA
CTGCGAGATTCCCTCGTATGCAGATTCTGCAGACCAGCTGTGATGGCGCT
AAGGGTTGGTCCAGCTCCTGGTCCGTGGCCATGACCATGGCCATGTCCCG
CTGCTCCGCCGCCCCTGCCTTTCGATCGAGTCGAACGACAGCTCGCTGCG
GGCGTTAAAAGTCAAGACGCACTGATTGCGCCCGCCCGCTCTCTGTCGCG
CTCCCTTTCCGCTCCCTTAAACCGTCGTTGCCGTGGGGGATGGGGTACTT
TCTCGATACCCTTG
BS03047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4276-PA | 2418 | aru-RA | 1814..2418 | 621..17 | 3025 | 100 | Minus |
CG4276-PD | 2337 | aru-RD | 1733..2337 | 621..17 | 3025 | 100 | Minus |
CG4276-PC | 2337 | aru-RC | 1733..2337 | 621..17 | 3025 | 100 | Minus |
CG4276-PA | 2418 | aru-RA | 1728..1773 | 710..665 | 230 | 100 | Minus |
CG4276-PD | 2337 | aru-RD | 1647..1692 | 710..665 | 230 | 100 | Minus |
CG4276-PC | 2337 | aru-RC | 1647..1692 | 710..665 | 230 | 100 | Minus |
CG4276-PA | 2418 | aru-RA | 1777..1815 | 659..621 | 195 | 100 | Minus |
CG4276-PD | 2337 | aru-RD | 1696..1734 | 659..621 | 195 | 100 | Minus |
CG4276-PC | 2337 | aru-RC | 1696..1734 | 659..621 | 195 | 100 | Minus |
CG4276-PA | 2418 | aru-RA | 1687..1728 | 750..709 | 160 | 95.2 | Minus |
CG4276-PD | 2337 | aru-RD | 1606..1647 | 750..709 | 160 | 95.2 | Minus |
CG4276-PC | 2337 | aru-RC | 1606..1647 | 750..709 | 160 | 95.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aru-RC | 2903 | CG4276-RC | 1845..2586 | 761..17 | 3575 | 99.1 | Minus |
aru-RD | 3026 | CG4276-RD | 1968..2709 | 761..17 | 3575 | 99.1 | Minus |
aru-RA | 2922 | CG4276-RA | 1864..2605 | 761..17 | 3575 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 862563..863031 | 290..761 | 2085 | 98.5 | Plus |
2L | 23513712 | 2L | 862318..862500 | 109..291 | 915 | 100 | Plus |
2L | 23513712 | 2L | 862166..862259 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:17:31 has no hits.
BS03047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:28 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-PA | 1674..2418 | 17..764 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:22 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4276-PD | 1593..2337 | 17..764 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:01 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 1861..2605 | 17..764 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:56 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 1861..2605 | 17..764 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:56 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 862166..862258 | 17..109 | 100 | <- | Plus |
2L | 862319..862498 | 110..289 | 100 | <- | Plus |
2L | 862563..863034 | 290..764 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:01 Download gff for
BS03047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 862166..862258 | 17..109 | 100 | <- | Plus |
arm_2L | 862319..862498 | 110..289 | 100 | <- | Plus |
arm_2L | 862563..863034 | 290..764 | 98 | | Plus |
BS03047.5prime Sequence
700 bp (549 high quality bases) assembled on 2005-11-30
> BS03047.5prime
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGTTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG
BS03047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4276-PA | 2418 | aru-RA | 81..765 | 16..700 | 3400 | 99.8 | Plus |
CG4276-PD | 2337 | aru-RD | 1..684 | 17..700 | 3395 | 99.8 | Plus |
CG4276-PC | 2337 | aru-RC | 1..684 | 17..700 | 3395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aru-RC | 2903 | CG4276-RC | 249..933 | 16..700 | 3410 | 99.9 | Plus |
aru-RD | 3026 | CG4276-RD | 372..1056 | 16..700 | 3410 | 99.9 | Plus |
aru-RA | 2922 | CG4276-RA | 268..952 | 16..700 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 864398..864746 | 364..16 | 1745 | 100 | Minus |
2L | 23513712 | 2L | 863943..864137 | 700..506 | 960 | 99.5 | Minus |
2L | 23513712 | 2L | 864195..864339 | 508..364 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:20:11 has no hits.
BS03047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:29 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-PA | 75..765 | 10..700 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:24 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4276-PA | 75..765 | 10..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:33 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 262..952 | 10..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:04 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 262..952 | 10..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:04 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 863943..864134 | 509..700 | 99 | <- | Minus |
2L | 864195..864338 | 365..508 | 100 | <- | Minus |
2L | 864398..864752 | 10..364 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:33 Download gff for
BS03047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 863943..864134 | 509..700 | 99 | <- | Minus |
arm_2L | 864195..864338 | 365..508 | 100 | <- | Minus |
arm_2L | 864398..864752 | 10..364 | 99 | | Minus |
BS03047.complete Sequence
2369 bp assembled on 2008-01-02
GenBank Submission: FJ634691
> BS03047.complete
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGCTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG
CAGCGGGCAGAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAG
CCACCATCACATGCACCAAAGGAGCAGCATGGAACAGTATGGAATCCGTG
CCGGAGTAGGAGTTTCTGGCGATGACGTTGCCCACATTAGTGGCGAGACG
GATTCGGAACACGGTGGGATTGGGGGCGGTGGCGCAACGGAGCGCGATGA
GACTAGCTCCACGTCCAGCGAGAAGTACGAGCGGGATGTGGCTGTGCTGA
ATCACTGTTTCGATGACATCGAGAAGTTCATAGCTCGTCTTCAGCACGCC
GCCGCCGCTTCCCGGGAGCTCGAGCGCCGTCGTCGCAATCGGAAGTCGAA
GAAAAGGGATCCGGGGGAGGGATTGCTCACTTTGAGGACACGGCCTCCCC
ACGAGAAGGAGTTCGTGGACATCTTTGCCAAGTTTAAGCTGTCATTTAAC
CTGCTGGCAAAGTTGAAGGCGCACATCCACGATCCCAACGCTCCCGAACT
GGTGCATTTCCTCTTCACGCCGCTGGCTCTGATTGTGGAGGCCTCCAGCG
ACACGTACTACGAGTCACAGCTACCGGCCCGTGTGGTTAATCCCCTGCTG
ACCAGAGAGGCCATCAACCTGCTCATCAACTGTGTAACCAGCAAGGAAAC
GGAGCTGTGGCGCTCGTTGGGCGATGCCTGGGTGATCCCGCGAGATCAGT
GGAAGGATGACGTTGGATCCTACCATCCGGTCTTCCTCGATGGCTGGTCA
CCGGACTATTTGATCAACGATGAACTGGAGCCACCACCAAATTCCCCGCC
CGCTCATGTGAGCAAGCGCAGACTCGAGGTCCAGGCTGGATCCGGACTAA
ATGGTCGTGGGGGAGGCGGATACGATGACTACGACTCGGGGAACGGGATG
AACATGGCCATGGGTATCGAGAAGTACACCATCCACCACGGCAACGACGG
TTTAAGGGAGCGGGAAAGGGAGCGCGACAGAGAGCGGGCGGGCGCAATCA
GTGCGTCTGACTTTAACGCCCGCAGCGAGCTGTCGTTCGACTCGATCGAA
GGCAGGGGCGGCGGAGCAGCGGGACATGGCCATGGTCATGGCCACGGACC
AGGAGCTGGACCAACCCTTAGCGCCATCACAGCTGGTCTGCAGAATCTGC
ATACGAGGGAATCTCGCAGTGGAAACGGGTACGGAGCAGGAGCTGGTCCG
GGGCCTTCGTCGGAGTTGGGCGGTGGAGGCAGAGGCCTGCCGAATGTCAG
CGACGACCAGATGCTCGAGTCCTGGCTGGAGGATCTGCAGGCGACGGGCG
CTAAGATTGTGCTGGTCACCTATCCGCGAACCGCCAACAACGACAAGGAG
CTTAGCGTGATGCGAGGCGAATACTTGGAGATCCTTGATGATACCCGAAA
GTGGTGGAAGGCGCGCAACATGCGGGGTCAGGTGGCCCACGTGCCGCACA
CGATTGTAACCCCCTTCAATTTCGGGGATGGAGATGGAGCCCAGTTCTAC
GGGCAACAGCAGCAGCCACCGACGGGTCCCACAGGTCCGGGCAACAAATC
GCGATCAGGGGATAATCCCGGCATGGAACAGCGATCGCCGGATCCCACCG
ACATGATGCGCAGCAAGCATCTGGGCAAGAAGGGCGAGTTCCGCTACTTC
TAGAAGCTTTCTAGACCAT
BS03047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aru-RA | 2418 | CG4276-PA | 81..2418 | 16..2353 | 11690 | 100 | Plus |
aru-RC | 2337 | CG4276-PC | 1..2337 | 17..2353 | 11685 | 100 | Plus |
aru-RD | 2337 | CG4276-PD | 1..2337 | 17..2353 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aru-RC | 2903 | CG4276-RC | 249..2586 | 16..2353 | 11690 | 100 | Plus |
aru-RD | 3026 | CG4276-RD | 372..2709 | 16..2353 | 11690 | 100 | Plus |
aru-RA | 2922 | CG4276-RA | 268..2605 | 16..2353 | 11690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 862563..864137 | 2080..506 | 7875 | 100 | Minus |
2L | 23513712 | 2L | 864398..864746 | 364..16 | 1745 | 100 | Minus |
2L | 23513712 | 2L | 862318..862500 | 2261..2079 | 915 | 100 | Minus |
2L | 23513712 | 2L | 864195..864339 | 508..364 | 725 | 100 | Minus |
2L | 23513712 | 2L | 862166..862259 | 2353..2260 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:53:06 has no hits.
BS03047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:00 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 75..2418 | 10..2353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:16 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RC | 250..2586 | 17..2353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:15 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 269..2605 | 17..2353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:00 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RC | 243..2586 | 10..2353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:06 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aru-RA | 269..2605 | 17..2353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:06 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 864398..864745 | 17..364 | 100 | | Minus |
2L | 862166..862258 | 2261..2353 | 100 | <- | Minus |
2L | 862319..862498 | 2081..2260 | 100 | <- | Minus |
2L | 862563..864134 | 509..2080 | 100 | <- | Minus |
2L | 864195..864338 | 365..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:15 Download gff for
BS03047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 862166..862258 | 2261..2353 | 100 | <- | Minus |
arm_2L | 862319..862498 | 2081..2260 | 100 | <- | Minus |
arm_2L | 862563..864134 | 509..2080 | 100 | <- | Minus |
arm_2L | 864195..864338 | 365..508 | 100 | <- | Minus |
arm_2L | 864398..864745 | 17..364 | 100 | | Minus |
BS03047.pep Sequence
Translation from 16 to 2352
> BS03047.pep
MVNHHSNGGGSAGNSSGSLRGGGAHGGGGGGGDYSGDDRSGGGEERERLE
SDLHDKPTYLLEHLATFTVNKESGIVYPADGMRRLLQLEKTTGIWSQKMQ
LCLDYQWVLIMDYETGNIIERFPASLVQEPTAFTSNDAMELYNNILVFIV
SGGGGSRSEMHIFQSQSVSAVHLVEDLKQLRSGKMITQQRGATPTQSGGG
GASSMAMMMSKTSSSSSHSRVELHQHREQRAERERERDRDRERESHHHMH
QRSSMEQYGIRAGVGVSGDDVAHISGETDSEHGGIGGGGATERDETSSTS
SEKYERDVAVLNHCFDDIEKFIARLQHAAAASRELERRRRNRKSKKRDPG
EGLLTLRTRPPHEKEFVDIFAKFKLSFNLLAKLKAHIHDPNAPELVHFLF
TPLALIVEASSDTYYESQLPARVVNPLLTREAINLLINCVTSKETELWRS
LGDAWVIPRDQWKDDVGSYHPVFLDGWSPDYLINDELEPPPNSPPAHVSK
RRLEVQAGSGLNGRGGGGYDDYDSGNGMNMAMGIEKYTIHHGNDGLRERE
RERDRERAGAISASDFNARSELSFDSIEGRGGGAAGHGHGHGHGPGAGPT
LSAITAGLQNLHTRESRSGNGYGAGAGPGPSSELGGGGRGLPNVSDDQML
ESWLEDLQATGAKIVLVTYPRTANNDKELSVMRGEYLEILDDTRKWWKAR
NMRGQVAHVPHTIVTPFNFGDGDGAQFYGQQQQPPTGPTGPGNKSRSGDN
PGMEQRSPDPTDMMRSKHLGKKGEFRYF*
BS03047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aru-PC | 778 | CG4276-PC | 1..778 | 1..778 | 4126 | 100 | Plus |
aru-PD | 778 | CG4276-PD | 1..778 | 1..778 | 4126 | 100 | Plus |
aru-PA | 805 | CG4276-PA | 28..805 | 1..778 | 4126 | 100 | Plus |
CG8907-PA | 712 | CG8907-PA | 24..377 | 56..487 | 705 | 39.1 | Plus |
CG8907-PB | 732 | CG8907-PB | 44..397 | 56..487 | 705 | 39.1 | Plus |
CG8907-PA | 712 | CG8907-PA | 407..477 | 652..722 | 233 | 54.9 | Plus |