Clone Sequence Records
BS03049.5prime Sequence
240 bp (239 high quality bases) assembled on 2005-11-29
> BS03049.5prime
GAAGTTATCAGTCGACATGTCTGCCACTAAGGTGAACCATTTGATCGGAG
CGACTACGCGCTACATTGCCGGACGGAATGCGGTGCAGACGGTCTACTGG
CGCACCTCAGCCGGACCCAATCCCCGGATGCTGAAGACCAACAAGCTGCA
GAACTTCGATCGCACCCAGAAGGCGCCTCAGAGTGTACGGATGCAGAACT
ATGATCGCAGCTATATCCGTGATTAGAAGCTTTCTAGACC
BS03049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PA | 210 | CG13315-RA | 1..210 | 17..226 | 1050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..344 | 17..226 | 1050 | 100 | Plus |
CG13315-RA | 618 | CG13315-RA | 135..344 | 17..226 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097220 | 17..226 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:19:02 has no hits.
BS03049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:31 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:27 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:23 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 17..232 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:36 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 17..232 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:36 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097225 | 17..232 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:23 Download gff for
BS03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090325 | 17..232 | 98 | | Plus |
BS03049.3prime Sequence
240 bp (239 high quality bases) assembled on 2005-11-30
> BS03049.3prime
ATGGTCTAGAAAGCTTCTAATCACGGATATAGCTGCGATCATAGTTCTGC
ATCCGTACACTCTGAGGCGCCTTCTGGGTGCGATCGAAGTTCTGCAGCTT
GTTGGTCTTCAGCATCCGGGGATTGGGTCCGGCTGAGGTGCGCCAGTAGA
CCGTCTGCACCGCATTCCGTCCGGCAATGTAGCGCGTAGTCGCTCCGATC
AAATGGTTCACCTTAGTGGCAGACATGTCGACTGATAACT
BS03049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PA | 210 | CG13315-RA | 1..210 | 226..17 | 1050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..344 | 226..17 | 1050 | 100 | Minus |
CG13315-RA | 618 | CG13315-RA | 135..344 | 226..17 | 1050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097220 | 226..17 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:16:24 has no hits.
BS03049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:30 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:26 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:40 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 11..226 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:26 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 11..226 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:26 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097225 | 11..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:40 Download gff for
BS03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090325 | 11..226 | 98 | | Minus |
BS03049.complete Sequence
242 bp (242 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ638768
> BS03049.complete
GAAGTTATCAGTCGACATGTCTGCCACTAAGGTGAACCATTTGATCGGAG
CGACTACGCGCTACATTGCCGGACGGAATGCGGTGCAGACGGTCTACTGG
CGCACCTCAGCCGGACCCAATCCCCGGATGCTGAAGACCAACAAGCTGCA
GAACTTCGATCGCACCCAGAAGGCGCCTCAGAGTGTACGGATGCAGAACT
ATGATCGCAGCTATATCCGTGATTAGAAGCTTTCTAGACCAT
BS03049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 210 | CG13315-PB | 1..210 | 17..226 | 1050 | 100 | Plus |
CG13315-RA | 210 | CG13315-PA | 1..210 | 17..226 | 1050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..344 | 17..226 | 1050 | 100 | Plus |
CG13315-RA | 618 | CG13315-RA | 135..344 | 17..226 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097220 | 17..226 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:28 has no hits.
BS03049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:08 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 1..210 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:23 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 136..350 | 17..232 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:16 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..344 | 17..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:08 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 136..350 | 17..232 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:44 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..344 | 17..226 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:44 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097220 | 17..226 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:16 Download gff for
BS03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090320 | 17..226 | 100 | | Plus |
BS03049.pep Sequence
Translation from 16 to 225
> BS03049.pep
MSATKVNHLIGATTRYIAGRNAVQTVYWRTSAGPNPRMLKTNKLQNFDRT
QKAPQSVRMQNYDRSYIRD*
BS03049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PB | 69 | CG13315-PB | 1..69 | 1..69 | 361 | 100 | Plus |
CG13315-PA | 69 | CG13315-PA | 1..69 | 1..69 | 361 | 100 | Plus |