Clone Sequence Records
BS03107.3prime Sequence
722 bp (571 high quality bases) assembled on 2005-11-30
> BS03107.3prime
ATGGTCTAGAAAGCTTTCATAAGTCCTTTAGAATGGCACTCTTTGCGTTT
TTCAACTTATCGAGGCGTTTCAACAAATGGTTGTTGGACGTTTCAGCTTC
CTCCAACTTCTCCAAGAGTTCCCGGTGCTCGCGTTGCAGCTTGCGGCGCT
CCAGCTTCAGCTCAGCCTCCGCCTTTTCGGCAGCTTCTGCGGTGCTTTTG
TATCGGATTACTTGAGTTTCGGAGCGCGCTAGGCTCGACTGTAGGTTGGC
GATTTCCTGTTCCGCCTTTTGCAGCTTATATTTATGGTCTGAAATGATTT
TGTTTGTTTCCCGTTGGGCCTCGTAATCATTCTCATCGCCGAAGGAACCT
TGCGAAAGACTGCGGCGTCCGGAAATTCCATCACTTTTATACTCGTCAAG
TTGTTCGTGAAGCTTCTGCACCTCCGCCAGCAGCCGCTGCTTCTCGTCAC
TGAACTTTTTAAGTCTAACGTCTAAAGAACCCTGCACGGAGGCCAGCACC
TTGGCATTCTCGACACTCACTAGAGCTCGCTTGGCATCGCTGCCATCGGC
ATTTTCAACTGCTACAATTAGAAGGTCCTGTTCGGCGATCAACGAGTCGC
GCTCCTTTAACTGCCCTTGTACTAGCTTAAGCTCGAAATTGGCGCGATCC
AAGTTGCGTTTGAGGGCATTGCAGTCACGCATCTTCTCCTTGAACTCGTG
CTGTAGTTGTGCATACCACTCT
BS03107.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PA | 1191 | CG8578-RA | 486..1191 | 722..17 | 3380 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 597..1302 | 722..17 | 3440 | 99.2 | Minus |
CG8578-RB | 1474 | CG8578-RB | 577..1282 | 722..17 | 3440 | 99.2 | Minus |
CG8578-RA | 1615 | CG8578-RA | 597..1302 | 722..17 | 3440 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15846097..15846347 | 722..472 | 1165 | 97.6 | Minus |
X | 23542271 | X | 15846957..15847141 | 312..128 | 925 | 100 | Minus |
X | 23542271 | X | 15846407..15846568 | 473..312 | 810 | 100 | Minus |
X | 23542271 | X | 15847201..15847313 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:38:00 has no hits.
BS03107.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:36 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 486..1191 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:33 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 486..1191 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:45 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 576..1284 | 12..722 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:57:33 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 597..1305 | 12..722 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:57:33 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15846097..15846347 | 472..722 | 97 | -> | Minus |
X | 15846409..15846567 | 313..471 | 100 | -> | Minus |
X | 15846957..15847141 | 128..312 | 100 | -> | Minus |
X | 15847203..15847316 | 12..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:45 Download gff for
BS03107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15740130..15740380 | 472..722 | 97 | -> | Minus |
arm_X | 15740442..15740600 | 313..471 | 100 | -> | Minus |
arm_X | 15740990..15741174 | 128..312 | 100 | -> | Minus |
arm_X | 15741236..15741349 | 12..127 | 97 | | Minus |
BS03107.5prime Sequence
743 bp (736 high quality bases) assembled on 2005-11-29
> BS03107.5prime
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGG
BS03107.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PA | 1191 | CG8578-RA | 1..727 | 17..743 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 112..838 | 17..743 | 3635 | 100 | Plus |
CG8578-RB | 1474 | CG8578-RB | 92..818 | 17..743 | 3635 | 100 | Plus |
CG8578-RA | 1615 | CG8578-RA | 112..838 | 17..743 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15845982..15846338 | 387..743 | 1785 | 100 | Plus |
X | 23542271 | X | 15845640..15845927 | 102..389 | 1440 | 100 | Plus |
X | 23542271 | X | 15845382..15845469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:54:48 has no hits.
BS03107.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:37 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 1..727 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:35 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 1..727 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:26 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..817 | 12..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:19 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 109..838 | 12..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:19 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15845984..15846338 | 389..743 | 100 | | Plus |
X | 15845379..15845468 | 12..103 | 97 | -> | Plus |
X | 15845642..15845926 | 104..388 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:26 Download gff for
BS03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15739412..15739501 | 12..103 | 97 | -> | Plus |
arm_X | 15739675..15739959 | 104..388 | 100 | -> | Plus |
arm_X | 15740017..15740371 | 389..743 | 100 | | Plus |
BS03107.complete Sequence
1223 bp (1223 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634692
> BS03107.complete
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTT
AGACGTTAGACTTAAAAAGTTCAGTGACGAGAAGCAGCGGCTGCTGGCGG
AGGTGCAGAAGCTTCACGAACAACTTGACGAGTATAAAAGTGATGGAATT
TCCGGACGCCGCAGTCTTTCGCAAGGTTCCTTCGGCGATGAGAATGATTA
CGAGGCCCAACGGGAAACAAACAAAATCATTTCAGACCATAAATATAAGC
TGCAAAAGGCGGAACAGGAAATCGCCAACCTACAGTCGAGCCTAGCGCGC
TCCGAAACTCAAGTAATCCGATACAAAAGCACCGCAGAAGCTGCCGAAAA
GGCGGAGGCTGAGCTGAAGCTGGAGCGCCGCAAGCTGCAACGCGAGCACC
GGGAACTCTTGGAGAAGTTGGAGGAAGCTGAAACGTCCAACAACCATTTG
TTGAAACGCCTCGATAAGTTGAAAAACGCAAAGAGTGCCATTCTAAAGGA
CTTATGAAAGCTTTCTAGACCAT
BS03107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1191 | CG8578-PC | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG8578-RB | 1191 | CG8578-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG8578-RA | 1191 | CG8578-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 112..1302 | 17..1207 | 5955 | 100 | Plus |
CG8578-RB | 1474 | CG8578-RB | 92..1282 | 17..1207 | 5955 | 100 | Plus |
CG8578-RA | 1615 | CG8578-RA | 112..1302 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15845982..15846347 | 387..752 | 1830 | 100 | Plus |
X | 23542271 | X | 15845640..15845927 | 102..389 | 1440 | 100 | Plus |
X | 23542271 | X | 15846957..15847141 | 912..1096 | 925 | 100 | Plus |
X | 23542271 | X | 15846407..15846568 | 751..912 | 810 | 100 | Plus |
X | 23542271 | X | 15847201..15847313 | 1095..1207 | 565 | 100 | Plus |
X | 23542271 | X | 15845382..15845469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:06 has no hits.
BS03107.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:23 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:03 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..1284 | 12..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:13 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 91..1280 | 17..1206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:23 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..1284 | 12..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:03 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 112..1301 | 17..1206 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:03 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15846409..15846567 | 753..911 | 100 | -> | Plus |
X | 15846957..15847141 | 912..1096 | 100 | -> | Plus |
X | 15847203..15847312 | 1097..1206 | 100 | | Plus |
X | 15845382..15845468 | 17..103 | 100 | -> | Plus |
X | 15845642..15845926 | 104..388 | 100 | -> | Plus |
X | 15845984..15846347 | 389..752 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:13 Download gff for
BS03107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15739415..15739501 | 17..103 | 100 | -> | Plus |
arm_X | 15739675..15739959 | 104..388 | 100 | -> | Plus |
arm_X | 15740017..15740380 | 389..752 | 100 | -> | Plus |
arm_X | 15740442..15740600 | 753..911 | 100 | -> | Plus |
arm_X | 15740990..15741174 | 912..1096 | 100 | -> | Plus |
arm_X | 15741236..15741345 | 1097..1206 | 100 | | Plus |
BS03107.pep Sequence
Translation from 16 to 1206
> BS03107.pep
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDL*
BS03107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PC | 396 | CG8578-PC | 1..396 | 1..396 | 1936 | 100 | Plus |
CG8578-PB | 396 | CG8578-PB | 1..396 | 1..396 | 1936 | 100 | Plus |
CG8578-PA | 396 | CG8578-PA | 1..396 | 1..396 | 1936 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 845..1246 | 27..392 | 161 | 22.6 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 848..1249 | 27..392 | 161 | 22.6 | Plus |