Clone BS03107 Report

Search the DGRC for BS03107

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:31
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG8578-RA
Protein status:BS03107.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03107.3prime Sequence

722 bp (571 high quality bases) assembled on 2005-11-30

> BS03107.3prime
ATGGTCTAGAAAGCTTTCATAAGTCCTTTAGAATGGCACTCTTTGCGTTT
TTCAACTTATCGAGGCGTTTCAACAAATGGTTGTTGGACGTTTCAGCTTC
CTCCAACTTCTCCAAGAGTTCCCGGTGCTCGCGTTGCAGCTTGCGGCGCT
CCAGCTTCAGCTCAGCCTCCGCCTTTTCGGCAGCTTCTGCGGTGCTTTTG
TATCGGATTACTTGAGTTTCGGAGCGCGCTAGGCTCGACTGTAGGTTGGC
GATTTCCTGTTCCGCCTTTTGCAGCTTATATTTATGGTCTGAAATGATTT
TGTTTGTTTCCCGTTGGGCCTCGTAATCATTCTCATCGCCGAAGGAACCT
TGCGAAAGACTGCGGCGTCCGGAAATTCCATCACTTTTATACTCGTCAAG
TTGTTCGTGAAGCTTCTGCACCTCCGCCAGCAGCCGCTGCTTCTCGTCAC
TGAACTTTTTAAGTCTAACGTCTAAAGAACCCTGCACGGAGGCCAGCACC
TTGGCATTCTCGACACTCACTAGAGCTCGCTTGGCATCGCTGCCATCGGC
ATTTTCAACTGCTACAATTAGAAGGTCCTGTTCGGCGATCAACGAGTCGC
GCTCCTTTAACTGCCCTTGTACTAGCTTAAGCTCGAAATTGGCGCGATCC
AAGTTGCGTTTGAGGGCATTGCAGTCACGCATCTTCTCCTTGAACTCGTG
CTGTAGTTGTGCATACCACTCT

BS03107.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PA 1191 CG8578-RA 486..1191 722..17 3380 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 597..1302 722..17 3440 99.2 Minus
CG8578-RB 1474 CG8578-RB 577..1282 722..17 3440 99.2 Minus
CG8578-RA 1615 CG8578-RA 597..1302 722..17 3440 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15846097..15846347 722..472 1165 97.6 Minus
X 23542271 X 15846957..15847141 312..128 925 100 Minus
X 23542271 X 15846407..15846568 473..312 810 100 Minus
X 23542271 X 15847201..15847313 129..17 565 100 Minus
Blast to na_te.dros performed on 2015-02-06 15:38:00 has no hits.

BS03107.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:36 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 486..1191 17..722 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:33 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 486..1191 17..722 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:45 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 576..1284 12..722 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:57:33 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 597..1305 12..722 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:57:33 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15846097..15846347 472..722 97 -> Minus
X 15846409..15846567 313..471 100 -> Minus
X 15846957..15847141 128..312 100 -> Minus
X 15847203..15847316 12..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:45 Download gff for BS03107.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15740130..15740380 472..722 97 -> Minus
arm_X 15740442..15740600 313..471 100 -> Minus
arm_X 15740990..15741174 128..312 100 -> Minus
arm_X 15741236..15741349 12..127 97   Minus

BS03107.5prime Sequence

743 bp (736 high quality bases) assembled on 2005-11-29

> BS03107.5prime
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGG

BS03107.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PA 1191 CG8578-RA 1..727 17..743 3635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 112..838 17..743 3635 100 Plus
CG8578-RB 1474 CG8578-RB 92..818 17..743 3635 100 Plus
CG8578-RA 1615 CG8578-RA 112..838 17..743 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15845982..15846338 387..743 1785 100 Plus
X 23542271 X 15845640..15845927 102..389 1440 100 Plus
X 23542271 X 15845382..15845469 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:54:48 has no hits.

BS03107.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:37 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 1..727 17..743 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:35 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 1..727 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:26 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..817 12..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:19 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 109..838 12..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:19 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15845984..15846338 389..743 100   Plus
X 15845379..15845468 12..103 97 -> Plus
X 15845642..15845926 104..388 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:26 Download gff for BS03107.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15739412..15739501 12..103 97 -> Plus
arm_X 15739675..15739959 104..388 100 -> Plus
arm_X 15740017..15740371 389..743 100   Plus

BS03107.complete Sequence

1223 bp (1223 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634692

> BS03107.complete
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTT
AGACGTTAGACTTAAAAAGTTCAGTGACGAGAAGCAGCGGCTGCTGGCGG
AGGTGCAGAAGCTTCACGAACAACTTGACGAGTATAAAAGTGATGGAATT
TCCGGACGCCGCAGTCTTTCGCAAGGTTCCTTCGGCGATGAGAATGATTA
CGAGGCCCAACGGGAAACAAACAAAATCATTTCAGACCATAAATATAAGC
TGCAAAAGGCGGAACAGGAAATCGCCAACCTACAGTCGAGCCTAGCGCGC
TCCGAAACTCAAGTAATCCGATACAAAAGCACCGCAGAAGCTGCCGAAAA
GGCGGAGGCTGAGCTGAAGCTGGAGCGCCGCAAGCTGCAACGCGAGCACC
GGGAACTCTTGGAGAAGTTGGAGGAAGCTGAAACGTCCAACAACCATTTG
TTGAAACGCCTCGATAAGTTGAAAAACGCAAAGAGTGCCATTCTAAAGGA
CTTATGAAAGCTTTCTAGACCAT

BS03107.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1191 CG8578-PC 1..1191 17..1207 5955 100 Plus
CG8578-RB 1191 CG8578-PB 1..1191 17..1207 5955 100 Plus
CG8578-RA 1191 CG8578-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 112..1302 17..1207 5955 100 Plus
CG8578-RB 1474 CG8578-RB 92..1282 17..1207 5955 100 Plus
CG8578-RA 1615 CG8578-RA 112..1302 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15845982..15846347 387..752 1830 100 Plus
X 23542271 X 15845640..15845927 102..389 1440 100 Plus
X 23542271 X 15846957..15847141 912..1096 925 100 Plus
X 23542271 X 15846407..15846568 751..912 810 100 Plus
X 23542271 X 15847201..15847313 1095..1207 565 100 Plus
X 23542271 X 15845382..15845469 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:52:06 has no hits.

BS03107.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:23 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:03 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..1284 12..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:13 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 91..1280 17..1206 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:23 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..1284 12..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:03 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 112..1301 17..1206 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:03 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
X 15846409..15846567 753..911 100 -> Plus
X 15846957..15847141 912..1096 100 -> Plus
X 15847203..15847312 1097..1206 100   Plus
X 15845382..15845468 17..103 100 -> Plus
X 15845642..15845926 104..388 100 -> Plus
X 15845984..15846347 389..752 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:13 Download gff for BS03107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15739415..15739501 17..103 100 -> Plus
arm_X 15739675..15739959 104..388 100 -> Plus
arm_X 15740017..15740380 389..752 100 -> Plus
arm_X 15740442..15740600 753..911 100 -> Plus
arm_X 15740990..15741174 912..1096 100 -> Plus
arm_X 15741236..15741345 1097..1206 100   Plus

BS03107.pep Sequence

Translation from 16 to 1206

> BS03107.pep
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDL*

BS03107.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PC 396 CG8578-PC 1..396 1..396 1936 100 Plus
CG8578-PB 396 CG8578-PB 1..396 1..396 1936 100 Plus
CG8578-PA 396 CG8578-PA 1..396 1..396 1936 100 Plus
CLIP-190-PN 1598 CG5020-PN 845..1246 27..392 161 22.6 Plus
CLIP-190-PR 1601 CG5020-PR 848..1249 27..392 161 22.6 Plus