Clone BS03124 Report

Search the DGRC for BS03124

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:31
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptPhk-3-RA
Protein status:BS03124.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03124.3prime Sequence

396 bp (395 high quality bases) assembled on 2005-11-30

> BS03124.3prime
ATGGTCTAGAAAGCTTTCAGTGTCCCTCGTGCTTTGCTCTGTAGATGCCT
TGGGGATCGTACTTGTTCAGGAGGAGCTTCCATTCGCCGGCTTTGTTGGC
GCGAAGGTAGTTGATTACCTTTTGTGAGTTTTTGCGTTGGACTTCCGTGC
ACTTTGAGCAGTCGGAATGAAGGGCGTCGGGTAAAAGGCGCTTAAGTTCA
CGACCCTCTGCTGTGCATGGGCCCTTGTCCATCAGGCACTTGAGATAATT
ACCCAACACTCGGTTGTTGCCCAGAACTTCATCCACGTTGACACTGTCGT
ACTTGTTGGTGTAGGTTTTTTCAGGAGCAGCTGCCGCAAGACCGACACAA
ACACAGAACACTAGAGCTAGCGAGGCTTTCATGTCGACTGATAACT

BS03124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9358-PA 366 Phk-3-RA 1..366 382..17 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..629 382..10 1835 99.5 Minus
Phk-3-RB 635 CG9358-RB 174..546 382..10 1835 99.5 Minus
Phk-3-RA 546 CG9358-RA 85..457 382..10 1835 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970932..24971304 10..382 1835 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:07:35 has no hits.

BS03124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:52 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:54 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9358-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:41 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..466 2..382 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:06 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..466 2..382 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:06 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24970923..24971304 2..382 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:41 Download gff for BS03124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858446..20858827 2..382 98 <- Plus

BS03124.5prime Sequence

396 bp (395 high quality bases) assembled on 2005-11-30

> BS03124.5prime
GAAGTTATCAGTCGACATGAAAGCCTCGCTAGCTCTAGTGTTCTGTGTTT
GTGTCGGTCTTGCGGCAGCTGCTCCTGAAAAAACCTACACCAACAAGTAC
GACAGTGTCAACGTGGATGAAGTTCTGGGCAACAACCGAGTGTTGGGTAA
TTATCTCAAGTGCCTGATGGACAAGGGCCCATGCACAGCAGAGGGTCGTG
AACTTAAGCGCCTTTTACCCGACGCCCTTCATTCCGACTGCTCAAAGTGC
ACGGAAGTCCAACGCAAAAACTCACAAAAGGTAATCAACTACCTTCGCGC
CAACAAAGCCGGCGAATGGAAGCTCCTCCTGAACAAGTACGATCCCCAAG
GCATCTACAGAGCAAAGCACGAGGGACACTGAAAGCTTTCTAGACC

BS03124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9358-PA 366 Phk-3-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..629 17..389 1835 99.5 Plus
Phk-3-RB 635 CG9358-RB 174..546 17..389 1835 99.5 Plus
Phk-3-RA 546 CG9358-RA 85..457 17..389 1835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970932..24971304 389..17 1835 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 22:55:02 has no hits.

BS03124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:20:53 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:33:56 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9358-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:56:52 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..465 17..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:30 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..465 17..396 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:30 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24970924..24971304 17..396 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:56:52 Download gff for BS03124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858447..20858827 17..396 98 <- Minus

BS03124.complete Sequence

398 bp (398 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ638769

> BS03124.complete
GAAGTTATCAGTCGACATGAAAGCCTCGCTAGCTCTAGTGTTCTGTGTTT
GTGTCGGTCTTGCGGCAGCTGCTCCTGAAAAAACCTACACCAACAAGTAC
GACAGTGTCAACGTGGATGAAGTTCTGGGCAACAACCGAGTGTTGGGTAA
TTATCTCAAGTGCCTGATGGACAAGGGCCCATGCACAGCAGAGGGTCGTG
AACTTAAGCGCCTTTTACCCGACGCCCTTCATTCCGACTGCTCAAAGTGC
ACGGAAGTCCAACGCAAAAACTCACAAAAGGTAATCAACTACCTTCGCGC
CAACAAAGCCGGCGAATGGAAGCTCCTCCTGAACAAGTACGATCCCCAAG
GCATCTACAGAGCAAAGCACGAGGGACACTGAAAGCTTTCTAGACCAT

BS03124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 366 CG9358-PC 1..366 17..382 1830 100 Plus
Phk-3-RB 366 CG9358-PB 1..366 17..382 1830 100 Plus
Phk-3-RA 366 CG9358-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..629 17..389 1835 99.5 Plus
Phk-3-RB 635 CG9358-RB 174..546 17..389 1835 99.5 Plus
Phk-3-RA 546 CG9358-RA 85..457 17..389 1835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970932..24971304 389..17 1835 99.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:54:03 has no hits.

BS03124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:09 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:46 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 82..463 17..397 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:38 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..449 17..381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:10 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 82..463 17..397 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:07 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..449 17..381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:07 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24970940..24971304 17..381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:38 Download gff for BS03124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858463..20858827 17..381 100   Minus

BS03124.pep Sequence

Translation from 16 to 381

> BS03124.pep
MKASLALVFCVCVGLAAAAPEKTYTNKYDSVNVDEVLGNNRVLGNYLKCL
MDKGPCTAEGRELKRLLPDALHSDCSKCTEVQRKNSQKVINYLRANKAGE
WKLLLNKYDPQGIYRAKHEGH*

BS03124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-PC 121 CG9358-PC 1..121 1..121 646 100 Plus
Phk-3-PB 121 CG9358-PB 1..121 1..121 646 100 Plus
Phk-3-PA 121 CG9358-PA 1..121 1..121 646 100 Plus
PebIII-PC 126 CG11390-PC 1..111 1..114 334 57 Plus
PebIII-PB 126 CG11390-PB 1..111 1..114 334 57 Plus