Clone BS03208 Report

Search the DGRC for BS03208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG1942-RA
Protein status:BS03208.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03208.3prime Sequence

782 bp (724 high quality bases) assembled on 2005-11-30

> BS03208.3prime
ATGGTCTAGAAAGCTTCTAGTGTACAACTAGAGTGGCACTCTTCGAATTC
TCCAAGTACTTGTCTTTGTACTGATCGAATAACTTCTCCAGCGACTCAAT
GACCTGTCCATGCACTTTATCCACATACTCCGAGTCTGGGTGCTCGTTCT
TAACAACATCGATGGGAGCACCAACAACTTGGACAATGCGTCGTCGGAAT
GGGAGGAAGCCAAAGGTGTAGTTGAAGAATCCGCGGCCCACAGGAATCAG
CGGAGAGACTCCGGTGAGCTTCTTGACAAAGTCCTGAAACCGTCGGAGCA
GCGAGTTGGGGGGATTTGCCACCTGATCGAAAATGTCCACCTCTCCAAAG
GAAAATGAAGGAACAATCGATGAGCCCGTTCTAATGGCCATTCGCACGAA
GCCTTTCCTATTCTTCAAGGTTAAAATGTACTGCCCAGGATGAGAGTCCA
TGGCTTCCTGGGCACCGCCAACCAGAATGGCCACCGCATTGGAGGTGAAA
CCATCCCGATTATCCTTGTGCTTGGGATCATTTGACTTGCTGAGCATACG
GATCAGCGCCTCTTTGGACACTGACACCAGACCCCAGCAGCGGAGGACCT
CACGCATGAACGGAACATGGAAATGCTGATCCAGAGTGCCCAGTTTGGGA
CGCACTTGGGGGAATAGCTCCAGCCACTTGGAGATTTCCAAGCCCATGTT
AATGCCAATGCCTGTGCCCAGAATTCCGTGCGGAAAGCTGGCCCAGATGT
AGTTCTTAGTAGCTGGCAGTTCGGCTGTTTTC

BS03208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 1059 CG1942-RA 294..1059 782..17 3780 99.7 Minus
CG1946-PA 681 CG1946-RA 154..219 544..479 255 95.4 Minus
CG1941-PA 1059 CG1941-RA 541..620 535..456 200 90 Minus
CG1941-PA 1059 CG1941-RA 883..917 193..159 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 478..1243 782..17 3800 99.7 Minus
CG1941-RD 1203 CG1941-RD 381..1083 758..56 1130 78.1 Minus
CG1941-RC 1678 CG1941-RC 856..1558 758..56 1130 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 717..375 1715 100 Minus
2R 25286936 2R 7713703..7713903 375..175 1005 100 Minus
2R 25286936 2R 7713962..7714120 175..17 795 100 Minus
2R 25286936 2R 7715890..7716199 705..396 485 77.1 Minus
2R 25286936 2R 7711079..7711410 712..381 430 75.3 Minus
2R 25286936 2R 7711481..7711676 370..175 425 81.1 Minus
2R 25286936 2R 7716283..7716478 370..175 320 77.6 Minus
2R 25286936 2R 7713173..7713238 782..717 300 97 Minus
Blast to na_te.dros performed 2015-02-12 00:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 382..431 115 70 Plus

BS03208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:22 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 294..1059 17..782 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:36 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 294..1059 17..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:38 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 478..1246 10..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:03 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 478..1246 10..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:03 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7713963..7714123 10..174 97   Minus
2R 7713173..7713238 717..782 96 -> Minus
2R 7713305..7713646 375..716 100 -> Minus
2R 7713704..7713903 175..374 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:38 Download gff for BS03208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3600678..3600743 717..782 96 -> Minus
arm_2R 3600810..3601151 375..716 100 -> Minus
arm_2R 3601209..3601408 175..374 100 -> Minus
arm_2R 3601468..3601628 10..174 97   Minus

BS03208.5prime Sequence

813 bp (731 high quality bases) assembled on 2005-11-29

> BS03208.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTT

BS03208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 1059 CG1942-RA 1..797 17..813 3985 100 Plus
CG1946-PA 681 CG1946-RA 154..219 548..613 255 95.4 Plus
CG1941-PA 1059 CG1941-RA 541..620 557..636 200 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 182..981 14..813 4000 100 Plus
CG1941-RD 1203 CG1941-RD 235..860 188..813 925 77.1 Plus
CG1941-RC 1678 CG1941-RC 710..1335 188..813 925 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 375..717 1715 100 Plus
2R 25286936 2R 7713106..7713238 243..375 665 100 Plus
2R 25286936 2R 7712759..7712890 14..145 660 100 Plus
2R 25286936 2R 7712950..7713048 145..243 495 100 Plus
2R 25286936 2R 7713703..7713799 717..813 485 100 Plus
2R 25286936 2R 7715890..7716199 387..696 485 77.1 Plus
2R 25286936 2R 7711079..7711410 380..711 430 75.3 Plus
2R 25286936 2R 7710879..7710980 274..375 225 81.4 Plus
2R 25286936 2R 7711481..7711572 722..813 205 81.5 Plus
Blast to na_te.dros performed 2015-02-12 06:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 710..661 115 70 Minus

BS03208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:24 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:37 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:16 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 177..981 9..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:36 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 177..981 9..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:36 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7712754..7712890 9..145 98 -> Plus
2R 7712951..7713048 146..243 100 -> Plus
2R 7713107..7713238 244..375 100 -> Plus
2R 7713305..7713646 376..717 100 -> Plus
2R 7713704..7713799 718..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:16 Download gff for BS03208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3600259..3600395 9..145 98 -> Plus
arm_2R 3600456..3600553 146..243 100 -> Plus
arm_2R 3600612..3600743 244..375 100 -> Plus
arm_2R 3600810..3601151 376..717 100 -> Plus
arm_2R 3601209..3601304 718..813 100   Plus

BS03208.complete Sequence

1091 bp (1091 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634693

> BS03208.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGATTCCT
GTGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATTCCGACG
ACGCATTGTCCAAGTTGTTGGTGCTCCCATCGATGTTGTTAAGAACGAGC
ACCCAGACTCGGAGTATGTGGATAAAGTGCATGGACAGGTCATTGAGTCG
CTGGAGAAGTTATTCGATCAGTACAAAGACAAGTACTTGGAGAATTCGAA
GAGTGCCACTCTAGTTGTACACTAGAAGCTTTCTAGACCAT

BS03208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1059 CG1942-PA 1..1059 17..1075 5295 100 Plus
CG1941-RD 1059 CG1941-PD 172..1020 188..1036 1290 76.8 Plus
CG1941-RC 1059 CG1941-PC 172..1020 188..1036 1290 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 182..1243 14..1075 5310 100 Plus
CG1941-RD 1203 CG1941-RD 235..1083 188..1036 1290 76.8 Plus
CG1941-RC 1678 CG1941-RC 710..1558 188..1036 1290 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 375..717 1715 100 Plus
2R 25286936 2R 7713703..7713903 717..917 1005 100 Plus
2R 25286936 2R 7713962..7714120 917..1075 795 100 Plus
2R 25286936 2R 7713106..7713238 243..375 665 100 Plus
2R 25286936 2R 7712759..7712890 14..145 660 100 Plus
2R 25286936 2R 7712950..7713048 145..243 495 100 Plus
2R 25286936 2R 7715890..7716199 387..696 485 77.1 Plus
2R 25286936 2R 7711079..7711410 380..711 430 75.3 Plus
2R 25286936 2R 7711481..7711676 722..917 425 81.1 Plus
2R 25286936 2R 7716283..7716478 722..917 320 77.6 Plus
2R 25286936 2R 7710879..7710980 274..375 225 81.4 Plus
Blast to na_te.dros performed 2014-11-27 15:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 710..661 115 70 Minus

BS03208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:35 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:58 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 132..1201 9..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:47 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 185..1243 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:35 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 132..1201 9..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:26 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 185..1243 17..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:26 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7713963..7714120 918..1075 100   Plus
2R 7712951..7713048 146..243 100 -> Plus
2R 7713107..7713238 244..375 100 -> Plus
2R 7713305..7713646 376..717 100 -> Plus
2R 7712762..7712890 17..145 100 -> Plus
2R 7713704..7713903 718..917 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:47 Download gff for BS03208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3601468..3601625 918..1075 100   Plus
arm_2R 3600267..3600395 17..145 100 -> Plus
arm_2R 3600456..3600553 146..243 100 -> Plus
arm_2R 3600612..3600743 244..375 100 -> Plus
arm_2R 3600810..3601151 376..717 100 -> Plus
arm_2R 3601209..3601408 718..917 100 -> Plus

BS03208.pep Sequence

Translation from 16 to 1074

> BS03208.pep
MKIEWAPLRVPLERRLQILVTAFFTSMLLILLSVSFLLVAGSLIYGGLLV
RSLMVTYLAYVFVHHKKTQSVVDGNGWMITRTNLLHRHYRDYFPVELVKT
AELPATKNYILASFPHGILGTGIGINMGLEISKWLELFPQVRPKLGTLDQ
HFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAI
LVGGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFD
QVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV
VGAPIDVVKNEHPDSEYVDKVHGQVIESLEKLFDQYKDKYLENSKSATLV
VH*

BS03208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 352 CG1942-PA 1..352 1..352 1819 100 Plus
CG1941-PD 352 CG1941-PD 1..352 1..352 1376 73 Plus
CG1941-PC 352 CG1941-PC 1..352 1..352 1376 73 Plus
CG1941-PB 352 CG1941-PB 1..352 1..352 1376 73 Plus
CG1941-PA 352 CG1941-PA 1..352 1..352 1376 73 Plus