Clone Sequence Records
BS03208.3prime Sequence
782 bp (724 high quality bases) assembled on 2005-11-30
> BS03208.3prime
ATGGTCTAGAAAGCTTCTAGTGTACAACTAGAGTGGCACTCTTCGAATTC
TCCAAGTACTTGTCTTTGTACTGATCGAATAACTTCTCCAGCGACTCAAT
GACCTGTCCATGCACTTTATCCACATACTCCGAGTCTGGGTGCTCGTTCT
TAACAACATCGATGGGAGCACCAACAACTTGGACAATGCGTCGTCGGAAT
GGGAGGAAGCCAAAGGTGTAGTTGAAGAATCCGCGGCCCACAGGAATCAG
CGGAGAGACTCCGGTGAGCTTCTTGACAAAGTCCTGAAACCGTCGGAGCA
GCGAGTTGGGGGGATTTGCCACCTGATCGAAAATGTCCACCTCTCCAAAG
GAAAATGAAGGAACAATCGATGAGCCCGTTCTAATGGCCATTCGCACGAA
GCCTTTCCTATTCTTCAAGGTTAAAATGTACTGCCCAGGATGAGAGTCCA
TGGCTTCCTGGGCACCGCCAACCAGAATGGCCACCGCATTGGAGGTGAAA
CCATCCCGATTATCCTTGTGCTTGGGATCATTTGACTTGCTGAGCATACG
GATCAGCGCCTCTTTGGACACTGACACCAGACCCCAGCAGCGGAGGACCT
CACGCATGAACGGAACATGGAAATGCTGATCCAGAGTGCCCAGTTTGGGA
CGCACTTGGGGGAATAGCTCCAGCCACTTGGAGATTTCCAAGCCCATGTT
AATGCCAATGCCTGTGCCCAGAATTCCGTGCGGAAAGCTGGCCCAGATGT
AGTTCTTAGTAGCTGGCAGTTCGGCTGTTTTC
BS03208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 1059 | CG1942-RA | 294..1059 | 782..17 | 3780 | 99.7 | Minus |
CG1946-PA | 681 | CG1946-RA | 154..219 | 544..479 | 255 | 95.4 | Minus |
CG1941-PA | 1059 | CG1941-RA | 541..620 | 535..456 | 200 | 90 | Minus |
CG1941-PA | 1059 | CG1941-RA | 883..917 | 193..159 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 478..1243 | 782..17 | 3800 | 99.7 | Minus |
CG1941-RD | 1203 | CG1941-RD | 381..1083 | 758..56 | 1130 | 78.1 | Minus |
CG1941-RC | 1678 | CG1941-RC | 856..1558 | 758..56 | 1130 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 717..375 | 1715 | 100 | Minus |
2R | 25286936 | 2R | 7713703..7713903 | 375..175 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 7713962..7714120 | 175..17 | 795 | 100 | Minus |
2R | 25286936 | 2R | 7715890..7716199 | 705..396 | 485 | 77.1 | Minus |
2R | 25286936 | 2R | 7711079..7711410 | 712..381 | 430 | 75.3 | Minus |
2R | 25286936 | 2R | 7711481..7711676 | 370..175 | 425 | 81.1 | Minus |
2R | 25286936 | 2R | 7716283..7716478 | 370..175 | 320 | 77.6 | Minus |
2R | 25286936 | 2R | 7713173..7713238 | 782..717 | 300 | 97 | Minus |
Blast to na_te.dros performed 2015-02-12 00:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 382..431 | 115 | 70 | Plus |
BS03208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:22 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 294..1059 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:36 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 294..1059 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:38 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 478..1246 | 10..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:03 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 478..1246 | 10..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:03 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7713963..7714123 | 10..174 | 97 | | Minus |
2R | 7713173..7713238 | 717..782 | 96 | -> | Minus |
2R | 7713305..7713646 | 375..716 | 100 | -> | Minus |
2R | 7713704..7713903 | 175..374 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:38 Download gff for
BS03208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3600678..3600743 | 717..782 | 96 | -> | Minus |
arm_2R | 3600810..3601151 | 375..716 | 100 | -> | Minus |
arm_2R | 3601209..3601408 | 175..374 | 100 | -> | Minus |
arm_2R | 3601468..3601628 | 10..174 | 97 | | Minus |
BS03208.5prime Sequence
813 bp (731 high quality bases) assembled on 2005-11-29
> BS03208.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTT
BS03208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 1059 | CG1942-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
CG1946-PA | 681 | CG1946-RA | 154..219 | 548..613 | 255 | 95.4 | Plus |
CG1941-PA | 1059 | CG1941-RA | 541..620 | 557..636 | 200 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 182..981 | 14..813 | 4000 | 100 | Plus |
CG1941-RD | 1203 | CG1941-RD | 235..860 | 188..813 | 925 | 77.1 | Plus |
CG1941-RC | 1678 | CG1941-RC | 710..1335 | 188..813 | 925 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 375..717 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 7713106..7713238 | 243..375 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7712759..7712890 | 14..145 | 660 | 100 | Plus |
2R | 25286936 | 2R | 7712950..7713048 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7713703..7713799 | 717..813 | 485 | 100 | Plus |
2R | 25286936 | 2R | 7715890..7716199 | 387..696 | 485 | 77.1 | Plus |
2R | 25286936 | 2R | 7711079..7711410 | 380..711 | 430 | 75.3 | Plus |
2R | 25286936 | 2R | 7710879..7710980 | 274..375 | 225 | 81.4 | Plus |
2R | 25286936 | 2R | 7711481..7711572 | 722..813 | 205 | 81.5 | Plus |
Blast to na_te.dros performed 2015-02-12 06:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 710..661 | 115 | 70 | Minus |
BS03208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:24 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:37 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:16 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 177..981 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:36 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 177..981 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:36 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7712754..7712890 | 9..145 | 98 | -> | Plus |
2R | 7712951..7713048 | 146..243 | 100 | -> | Plus |
2R | 7713107..7713238 | 244..375 | 100 | -> | Plus |
2R | 7713305..7713646 | 376..717 | 100 | -> | Plus |
2R | 7713704..7713799 | 718..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:16 Download gff for
BS03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3600259..3600395 | 9..145 | 98 | -> | Plus |
arm_2R | 3600456..3600553 | 146..243 | 100 | -> | Plus |
arm_2R | 3600612..3600743 | 244..375 | 100 | -> | Plus |
arm_2R | 3600810..3601151 | 376..717 | 100 | -> | Plus |
arm_2R | 3601209..3601304 | 718..813 | 100 | | Plus |
BS03208.complete Sequence
1091 bp (1091 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634693
> BS03208.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGATTCCT
GTGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATTCCGACG
ACGCATTGTCCAAGTTGTTGGTGCTCCCATCGATGTTGTTAAGAACGAGC
ACCCAGACTCGGAGTATGTGGATAAAGTGCATGGACAGGTCATTGAGTCG
CTGGAGAAGTTATTCGATCAGTACAAAGACAAGTACTTGGAGAATTCGAA
GAGTGCCACTCTAGTTGTACACTAGAAGCTTTCTAGACCAT
BS03208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1059 | CG1942-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
CG1941-RD | 1059 | CG1941-PD | 172..1020 | 188..1036 | 1290 | 76.8 | Plus |
CG1941-RC | 1059 | CG1941-PC | 172..1020 | 188..1036 | 1290 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 182..1243 | 14..1075 | 5310 | 100 | Plus |
CG1941-RD | 1203 | CG1941-RD | 235..1083 | 188..1036 | 1290 | 76.8 | Plus |
CG1941-RC | 1678 | CG1941-RC | 710..1558 | 188..1036 | 1290 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 375..717 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 7713703..7713903 | 717..917 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 7713962..7714120 | 917..1075 | 795 | 100 | Plus |
2R | 25286936 | 2R | 7713106..7713238 | 243..375 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7712759..7712890 | 14..145 | 660 | 100 | Plus |
2R | 25286936 | 2R | 7712950..7713048 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7715890..7716199 | 387..696 | 485 | 77.1 | Plus |
2R | 25286936 | 2R | 7711079..7711410 | 380..711 | 430 | 75.3 | Plus |
2R | 25286936 | 2R | 7711481..7711676 | 722..917 | 425 | 81.1 | Plus |
2R | 25286936 | 2R | 7716283..7716478 | 722..917 | 320 | 77.6 | Plus |
2R | 25286936 | 2R | 7710879..7710980 | 274..375 | 225 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-27 15:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 710..661 | 115 | 70 | Minus |
BS03208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:35 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:58 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 132..1201 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:47 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 185..1243 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:35 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 132..1201 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:26 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 185..1243 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:26 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7713963..7714120 | 918..1075 | 100 | | Plus |
2R | 7712951..7713048 | 146..243 | 100 | -> | Plus |
2R | 7713107..7713238 | 244..375 | 100 | -> | Plus |
2R | 7713305..7713646 | 376..717 | 100 | -> | Plus |
2R | 7712762..7712890 | 17..145 | 100 | -> | Plus |
2R | 7713704..7713903 | 718..917 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:47 Download gff for
BS03208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3601468..3601625 | 918..1075 | 100 | | Plus |
arm_2R | 3600267..3600395 | 17..145 | 100 | -> | Plus |
arm_2R | 3600456..3600553 | 146..243 | 100 | -> | Plus |
arm_2R | 3600612..3600743 | 244..375 | 100 | -> | Plus |
arm_2R | 3600810..3601151 | 376..717 | 100 | -> | Plus |
arm_2R | 3601209..3601408 | 718..917 | 100 | -> | Plus |
BS03208.pep Sequence
Translation from 16 to 1074
> BS03208.pep
MKIEWAPLRVPLERRLQILVTAFFTSMLLILLSVSFLLVAGSLIYGGLLV
RSLMVTYLAYVFVHHKKTQSVVDGNGWMITRTNLLHRHYRDYFPVELVKT
AELPATKNYILASFPHGILGTGIGINMGLEISKWLELFPQVRPKLGTLDQ
HFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAI
LVGGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFD
QVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV
VGAPIDVVKNEHPDSEYVDKVHGQVIESLEKLFDQYKDKYLENSKSATLV
VH*
BS03208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 352 | CG1942-PA | 1..352 | 1..352 | 1819 | 100 | Plus |
CG1941-PD | 352 | CG1941-PD | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PC | 352 | CG1941-PC | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PB | 352 | CG1941-PB | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PA | 352 | CG1941-PA | 1..352 | 1..352 | 1376 | 73 | Plus |