Clone BS03210 Report

Search the DGRC for BS03210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptcsw-RA
Protein status:BS03210.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03210.3prime Sequence

852 bp (785 high quality bases) assembled on 2005-11-30

> BS03210.3prime
ATGGTCTAGAAAGCTTTCATGTTTTGCGCGGCGGTGTCGGTGGCGGCGGC
AACGCAGGCGCATGGCTTGGCGGTCGCAAGCCGATCATGTCTTTGGGAAT
GTTTTTGAATTTTGCTGCTCCCGCCGGAGCCTGCTCCTCGCGCTGCTGTT
GCTGCTTCAGCGAGTCGCTGTAAAAGTTCGACTTGCGCATATTGCCGCCC
AGCCCCAAGCCGATGCCGCCCAGTAGGGCGTTGATGTTACCGTTGCTGCT
GCCGTTGCTGCTGCTGGTGGTGCTGCTCCCGCCGCCGTTGCTGCAGCCGC
TATTGCCAATGCCGTTGTTATTATTGTTGCAGTTGACCACCGGCAACGGC
GGCTGCTGCTTCGATGCGTGCTTGTTGCCGACGCCCATGCCCACGCCCAT
GCTTAGGCCCATCCCAGTGCCCAAATCCGCCGATGTCGGCGTCAGTGGCG
TCTTACTCGGAACTAAACTTATGCTAGAAATTGCTGGTGGTAATGGAGAT
CTTTGTGAATCGTTTCCAATTTCGCCCGTGTACTTTATATTGGTGTACTC
GCGGCCAACCTGCAGGCTCTGCTCCTCAGCTCGTTTCCGGGCGATCAGGG
TCTGTATATAGTGCTGCACCGCATAGTAGACGAACTTGTATTGCGCCTCG
GTTTGCACAAGACCGGAACGCTGCGATCGGACCATCTGAATGGTGCGCTG
GATGTCGATTTCAGTATCCAATCCATTGCGCACAATCTGATCGAGAATCA
TATCGATCACAATAAAGGTGCCAGTGCGACCGATGCCCCCAGAGCAGTGC
ACGCAGATCGGACCCGGCTTCTCGCCCGCTTGAGCCAGGTGACTCTGACG
CG

BS03210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3954-PA 2526 csw-RA 1691..2526 852..17 4155 99.8 Minus
CG3954-PC 2049 csw-RC 1214..2049 852..17 4155 99.8 Minus
CG3954-PB 2838 csw-RB 1991..2728 852..115 3665 99.8 Minus
CG3954-PB 2838 csw-RB 2806..2838 117..85 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RD 7119 CG3954-RD 2384..3219 852..17 4165 99.9 Minus
csw-RC 4106 CG3954-RC 1408..2243 852..17 4165 99.9 Minus
csw-RA 4560 CG3954-RA 1862..2697 852..17 4165 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2111205..2111623 533..115 2095 100 Minus
X 23542271 X 2110949..2111141 724..532 965 100 Minus
X 23542271 X 2111701..2111801 117..17 505 100 Minus
X 23542271 X 2110744..2110836 815..723 450 98.9 Minus
X 23542271 X 2110629..2110667 852..814 195 100 Minus
Blast to na_te.dros performed 2015-02-03 14:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3252..3382 361..231 123 56.8 Minus

BS03210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:24 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-PC 1214..2049 17..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:38 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3954-PC 1214..2049 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:06:41 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 1862..2697 17..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:54:20 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 1862..2697 17..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:54:20 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2110629..2110666 815..852 100 -> Minus
X 2110745..2110835 724..814 98 -> Minus
X 2110950..2111139 534..723 100 -> Minus
X 2111205..2111623 115..533 100 -> Minus
X 2111704..2111801 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:06:41 Download gff for BS03210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2004778..2004868 724..814 98 -> Minus
arm_X 2004983..2005172 534..723 100 -> Minus
arm_X 2004662..2004699 815..852 100 -> Minus
arm_X 2005238..2005656 115..533 100 -> Minus
arm_X 2005737..2005834 17..114 100   Minus

BS03210.5prime Sequence

845 bp (755 high quality bases) assembled on 2005-11-30

> BS03210.5prime
GAAGTTATCAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATAT
CTGGCATCGAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCC
TTCCTCGCCCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGT
GCGCCGCGGCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACT
TCTTTGATCTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTA
CAATACTACATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCAT
CGAACTCAAGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGT
TTCATGGCAATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGG
GGCAAGAATGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGA
CTTCGTCCTTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTC
GATGGCAGGACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACC
TTGTCGGAACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTG
CGGAACCGTGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGG
CGGCCGGCATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGG
GAGGAATTCGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAA
CGAGGGCTACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATAT
TGCCATACGACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATA

BS03210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3954-PA 2526 csw-RA 1..829 17..845 4145 100 Plus
CG3954-PB 2838 csw-RB 630..1129 346..845 2500 100 Plus
CG3954-PC 2049 csw-RC 1..352 494..845 1760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 4560 CG3954-RA 172..1000 17..845 4145 100 Plus
csw-RD 7119 CG3954-RD 707..1522 30..845 4080 100 Plus
csw-RC 4106 CG3954-RC 46..546 345..845 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2095008..2095199 29..220 960 100 Plus
X 23542271 X 2109227..2109415 501..689 930 99.5 Plus
X 23542271 X 2108378..2108543 344..509 830 100 Plus
X 23542271 X 2095269..2095396 218..345 640 100 Plus
X 23542271 X 2109481..2109600 687..806 600 100 Plus
X 23542271 X 2109725..2109767 803..845 200 97.7 Plus
Blast to na_te.dros performed on 2015-02-11 09:58:49 has no hits.

BS03210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:25 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:39 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3954-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:37:34 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 167..999 10..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:01 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 167..999 10..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:01 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2095010..2095197 31..218 100 -> Plus
X 2095270..2095396 219..345 100 -> Plus
X 2108380..2108542 346..508 100 -> Plus
X 2109235..2109414 509..688 100 -> Plus
X 2109483..2109600 689..806 100 -> Plus
X 2109729..2109766 807..844 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:37:34 Download gff for BS03210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2003516..2003633 689..806 100 -> Plus
arm_X 1989043..1989230 31..218 100 -> Plus
arm_X 1989303..1989429 219..345 100 -> Plus
arm_X 2002413..2002575 346..508 100 -> Plus
arm_X 2003268..2003447 509..688 100 -> Plus
arm_X 2003762..2003799 807..844 100   Plus

BS03210.complete Sequence

2558 bp assembled on 2008-01-02

GenBank Submission: FJ634694

> BS03210.complete
GAAGTTATCAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATAT
CTGGCATCGAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCC
TTCCTCGCCCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGT
GCGCCGCGGCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACT
TCTTTGATCTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTA
CAATACTACATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCAT
CGAACTCAAGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGT
TTCATGGCAATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGG
GGCAAGAATGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGA
CTTCGTCCTTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTC
GATGGCAGGACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACC
TTGTCGGAACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTG
CGGAACCGTGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGG
CGGCCGGCATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGG
GAGGAATTCGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAA
CGAGGGCTACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATAT
TGCCATACGACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATAGCGTG
GCCGGAGCCGAGTACATCAATGCCAACTACATACGGCTGCCCACCGACGG
CGACCTGTACAACATGAGCAGCTCGTCGGAGAGCCTGAACAGCTCGGTGC
CCTCGTGCCCCGCCTGCACGGCTGCCCAGACACAGCGGAACTGCTCCAAC
TGCCAGCTGCAAAACAAGACGTGCGTGCAGTGCGCCGTGAAGAGCGCCAT
TCTGCCGTATAGCAACTGTGCCACCTGCAGCCGCAAGTCAGACTCCCTGA
GCAAGCACAAGCGGAGCGAATCCTCGGCCTCTTCATCGCCCTCCTCCGGC
TCTGGGTCCGGACCAGGATCGTCGGGCACCAGCGGAGTGAGCAGCGTCAA
TGGACCCGGCACACCCACCAATCTCACGAGCGGCACAGCCGGATGTCTGG
TCGGCCTGCTGAAGAGACACTCGAACGACTCGTCCGGAGCTGTTTCTATA
TCGATGGCCGAACGGGAACGCGAGAGGGAGCGCGAGATGTTTAAGACCTA
CATCGCCACCCAGGGCTGTCTGCTCACCCAGCAAGTGAACACGGTGACGG
ACTTCTGGAACATGGTCTGGCAGGAGAACACGCGGGTGATCGTCATGACC
ACCAAGGAGTACGAGCGCGGCAAAGAAAAGTGCGCCCGCTACTGGCCGGA
CGAGGGTAGATCGGAGCAGTTCGGCCACGCGCGGATACAGTGCGTCTCGG
AGAACTCGACCAGTGACTATACGCTGCGCGAGTTCCTCGTCTCGTGGCGG
GATCAGCCGGCGCGCCGGATCTTTCACTACCATTTCCAGGTGTGGCCGGA
TCACGGAGTGCCCGCCGATCCGGGCTGTGTGCTCAACTTCCTGCAAGATG
TCAACACGCGTCAGAGTCACCTGGCTCAAGCGGGCGAGAAGCCGGGTCCG
ATCTGCGTGCACTGCTCTGCGGGCATCGGTCGCACTGGCACCTTTATTGT
GATCGATATGATTCTCGATCAGATTGTGCGCAATGGATTGGATACTGAAA
TCGACATCCAGCGCACCATTCAGATGGTCCGATCGCAGCGTTCCGGTCTT
GTGCAAACCGAGGCGCAATACAAGTTCGTCTACTATGCGGTGCAGCACTA
TATACAGACCCTGATCGCCCGGAAACGAGCTGAGGAGCAGAGCCTGCAGG
TTGGCCGCGAGTACACCAATATAAAGTACACGGGCGAAATTGGAAACGAT
TCACAAAGATCTCCATTACCACCAGCAATTTCTAGCATAAGTTTAGTTCC
GAGTAAGACGCCACTGACGCCGACATCGGCGGATTTGGGCACTGGGATGG
GCCTAAGCATGGGCGTGGGCATGGGCGTCGGCAACAAGCACGCATCGAAG
CAGCAGCCGCCGTTGCCGGTGGTCAACTGCAACAATAATAACAACGGCAT
TGGCAATAGCGGCTGCAGCAACGGCGGCGGGAGCAGCACCACCAGCAGCA
GCAACGGCAGCAGCAACGGTAACATCAACGCCCTACTGGGCGGCATCGGC
TTGGGGCTGGGCGGCAATATGCGCAAGTCGAACTTTTACAGCGACTCGCT
GAAGCAGCAACAGCAGCGCGAGGAGCAGGCTCCGGCGGGAGCAGCAAAAT
TCAAAAACATTCCCAAAGACATGATCGGCTTGCGACCGCCAAGCCATGCG
CCTGCGTTGCCGCCGCCACCGACACCGCCGCGCAAAACATGAAAGCTTTC
TAGACCAT

BS03210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 2526 CG3954-PA 1..2526 17..2542 12630 100 Plus
csw-RD 2685 CG3954-PD 173..2685 30..2542 12565 100 Plus
csw-RB 2838 CG3954-PB 630..2728 346..2444 10495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 4560 CG3954-RA 172..2697 17..2542 12630 100 Plus
csw-RD 7119 CG3954-RD 707..3219 30..2542 12565 100 Plus
csw-RC 4106 CG3954-RC 46..2243 345..2542 10990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2109725..2110667 803..1745 4700 99.9 Plus
X 23542271 X 2111205..2111623 2026..2444 2095 100 Plus
X 23542271 X 2110949..2111141 1835..2027 965 100 Plus
X 23542271 X 2095008..2095199 29..220 960 100 Plus
X 23542271 X 2109227..2109415 501..689 930 99.5 Plus
X 23542271 X 2108378..2108543 344..509 830 100 Plus
X 23542271 X 2095269..2095396 218..345 640 100 Plus
X 23542271 X 2109481..2109600 687..806 600 100 Plus
X 23542271 X 2111701..2111801 2442..2542 505 100 Plus
X 23542271 X 2110744..2110836 1744..1836 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:55:57 has no hits.

BS03210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:04 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 1..2526 17..2542 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:50 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 170..2694 17..2541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:56 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 172..2696 17..2541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:04 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 165..2695 10..2542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:36 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 172..2696 17..2541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:36 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
X 2095010..2095197 31..218 100 -> Plus
X 2095270..2095396 219..345 100 -> Plus
X 2108380..2108542 346..508 100 -> Plus
X 2109235..2109414 509..688 100 -> Plus
X 2109483..2109600 689..806 100 -> Plus
X 2109729..2110666 807..1744 100 -> Plus
X 2110745..2110835 1745..1835 100 -> Plus
X 2110950..2111139 1836..2025 100 -> Plus
X 2111205..2111623 2026..2444 100 -> Plus
X 2111704..2111800 2445..2541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:56 Download gff for BS03210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2005737..2005833 2445..2541 100   Plus
arm_X 2004983..2005172 1836..2025 100 -> Plus
arm_X 2005238..2005656 2026..2444 100 -> Plus
arm_X 1989043..1989230 31..218 100 -> Plus
arm_X 1989303..1989429 219..345 100 -> Plus
arm_X 2002413..2002575 346..508 100 -> Plus
arm_X 2003268..2003447 509..688 100 -> Plus
arm_X 2003516..2003633 689..806 100 -> Plus
arm_X 2003762..2004699 807..1744 100 -> Plus
arm_X 2004778..2004868 1745..1835 100 -> Plus

BS03210.pep Sequence

Translation from 16 to 2541

> BS03210.pep
MSSRRWFHPTISGIEAEKLLQEQGFDGSFLARLSSSNPGAFTLSVRRGNE
VTHIKIQNNGDFFDLYGGEKFATLPELVQYYMENGELKEKNGQAIELKQP
LICAEPTTERWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSV
RTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVVH
LRQPFNATRITAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQ
ENRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNM
SSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKTCVQCAVKSAILPYSN
CATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTP
TNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQG
CLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE
QFGHARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPA
DPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMIL
DQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLI
ARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPL
TPTSADLGTGMGLSMGVGMGVGNKHASKQQPPLPVVNCNNNNNGIGNSGC
SNGGGSSTTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQ
REEQAPAGAAKFKNIPKDMIGLRPPSHAPALPPPPTPPRKT*

BS03210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
csw-PA 841 CG3954-PA 1..841 1..841 4433 100 Plus
csw-PD 894 CG3954-PD 59..894 6..841 4410 100 Plus
csw-PB 945 CG3954-PB 211..922 111..839 3687 96.7 Plus
csw-PC 682 CG3954-PC 1..682 160..841 3604 100 Plus
l(1)G0232-PH 498 CG32697-PH 273..475 445..645 381 41 Plus
csw-PD 894 CG3954-PD 160..257 2..100 229 47.5 Plus
csw-PB 945 CG3954-PB 211..304 6..100 222 48.4 Plus