Clone Sequence Records
BS03211.3prime Sequence
819 bp (710 high quality bases) assembled on 2005-11-30
> BS03211.3prime
ATGGTCTAGAAAGCTTTTACTGCTCTTTGGGCAGGAGCTCAGCGAAGGCG
GCTGTGGGCTTGAAGGCCGTCACCTCGCTGAAGACCATCTCCCGCCACTT
CTCCACCGGCAGCTCGTTCTCCTCGAAGCTCTGGTCGTAGAGCGCGGCGG
TCTGCTCATCGGTTGGATCGTGGTACTTCTCCATGTACGGATGGGCCAGC
GCCTGCTCGGCGGTTATGCGCTTGTCGGCGTCAAGTTCCAGCATCTTCTC
CAGCAAATCGATGGCCAGCGGATTGGCACCGCGGAAGATGTCGCGGAAAT
TGCGGCGCGGCATCACCGGCAGTGAACGAATATAGTTTCTAGCGCTCTCC
GAGGAGATGCGGCTCATGAACTCATCAGCTGGCGTGCCCAGCACTTCCAT
GATGAGGTTCAGCTGATGGATGTGATCGGTTCCAGGGAACAGCGTGCGCC
CAGTCAGCAGCTCAGCCATGATGCAGCCCACCGACCAGATGTCCGCCGTC
TGGTTGTAGTGCATCCAGTTGAGCATGATCTCAGGCGCCCGGTACCATCG
CGTTGCGACGTATCCGGTCATCTCGCTTTCTGCGGGACGGGCCAAACCGA
AATCCAGGATGCGAAGCTCACAGTCCTCGTTTACCGCAATGTTCGATGGC
TTTAGATCACGATGGATGACCCCAGCGCTGTGGATGTACTTCAGACCGCG
CAGGATTTGGTAGACCAGAAACTGGACATGATCATCAAACAGTTTCTGCG
TGCGTATTATGTTGTTCAGATCGGCGTCCATCAAGTGGGTCACCATGTAC
ACTTGCTGGGACTGATCCC
BS03211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7393-PA | 1098 | p38b-RA | 297..1098 | 818..17 | 3960 | 99.7 | Minus |
CG5475-PA | 1101 | Mpk2-RA | 565..653 | 553..465 | 220 | 89.8 | Minus |
CG5475-PB | 1101 | Mpk2-RB | 565..653 | 553..465 | 220 | 89.8 | Minus |
CG5475-PA | 1101 | Mpk2-RA | 316..365 | 802..753 | 150 | 92 | Minus |
CG5475-PB | 1101 | Mpk2-RB | 316..365 | 802..753 | 150 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 506..1307 | 818..17 | 3980 | 99.8 | Minus |
p38a-RC | 1474 | CG5475-RC | 496..1185 | 809..120 | 930 | 75.8 | Minus |
p38a-RB | 1634 | CG5475-RB | 656..1345 | 809..120 | 930 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13781296..13782097 | 818..17 | 3980 | 99.8 | Minus |
3R | 32079331 | 3R | 24150705..24151394 | 120..809 | 930 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:50:48 has no hits.
BS03211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:26 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-PA | 296..1098 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:40 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7393-PA | 296..1098 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:09:19 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 505..1307 | 17..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:39 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 505..1307 | 17..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:39 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13781295..13782097 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:09:19 Download gff for
BS03211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13781295..13782097 | 17..819 | 99 | | Minus |
BS03211.5prime Sequence
766 bp (749 high quality bases) assembled on 2005-11-30
> BS03211.5prime
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATG
BS03211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7393-PA | 1098 | p38b-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 565..653 | 578..666 | 220 | 89.8 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 565..653 | 578..666 | 220 | 89.8 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 316..365 | 329..378 | 150 | 92 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 316..365 | 329..378 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 206..959 | 13..766 | 3755 | 99.9 | Plus |
p38a-RC | 1474 | CG5475-RC | 215..925 | 41..751 | 1255 | 78.7 | Plus |
p38a-RB | 1634 | CG5475-RB | 375..1085 | 41..751 | 1255 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13780996..13781749 | 13..766 | 3755 | 99.9 | Plus |
3R | 32079331 | 3R | 24150965..24151675 | 751..41 | 1215 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:51:55 has no hits.
BS03211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:27 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:42 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7393-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:31:27 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..959 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:44 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..959 | 9..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:44 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13780993..13781749 | 9..766 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:31:27 Download gff for
BS03211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13780993..13781749 | 9..766 | 99 | | Plus |
BS03211.complete Sequence
1130 bp (1130 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634695
> BS03211.complete
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGA
CGCCGACAAGCGCATAACCGCCGAGCAGGCGCTGGCCCATCCGTACATGG
AGAAGTACCACGATCCAACCGATGAGCAGACCGCCGCGCTCTACGACCAG
AGCTTCGAGGAGAACGAGCTGCCGGTGGAGAAGTGGCGGGAGATGGTCTT
CAGCGAGGTGACGGCCTTCAAGCCCACAGCCGCCTTCGCTGAGCTCCTGC
CCAAAGAGCAGTAAAAGCTTTCTAGACCAT
BS03211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1098 | CG7393-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
p38a-RC | 1101 | CG5475-PC | 28..998 | 41..1011 | 1270 | 75.4 | Plus |
p38a-RB | 1101 | CG5475-PB | 28..998 | 41..1011 | 1270 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 206..1307 | 13..1114 | 5495 | 99.9 | Plus |
p38a-RC | 1474 | CG5475-RC | 215..1185 | 41..1011 | 1270 | 75.4 | Plus |
p38a-RB | 1634 | CG5475-RB | 375..1345 | 41..1011 | 1270 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13780996..13782097 | 13..1114 | 5495 | 99.9 | Plus |
3R | 32079331 | 3R | 24150705..24151675 | 1011..41 | 1270 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:22 has no hits.
BS03211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:36 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 1..1098 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:00 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 196..1300 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:14 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 210..1305 | 17..1112 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:36 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 196..1300 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:52 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 210..1305 | 17..1112 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:52 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13781000..13782095 | 17..1112 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:14 Download gff for
BS03211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13781000..13782095 | 17..1112 | 100 | | Plus |
BS03211.pep Sequence
Translation from 16 to 1113
> BS03211.pep
MSRKMAKFYKLDINRTEWEIPETYQNLQPVGQGAYGQVCKAVVRGTSTKV
AIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDVFHPGQPADSLD
QFQQVYMVTHLMDADLNNIIRTQKLSDDHVQFLVYQILRGLKYIHSAGVI
HRDLKPSNIAVNEDCELRILDFGLARPAESEMTGYVATRWYRAPEIMLNW
MHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADEFM
SRISSESARNYIRSLPVMPRRNFRDIFRGANPLAIDLLEKMLELDADKRI
TAEQALAHPYMEKYHDPTDEQTAALYDQSFEENELPVEKWREMVFSEVTA
FKPTAAFAELLPKEQ*
BS03211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-PA | 365 | CG7393-PA | 1..365 | 1..365 | 1909 | 100 | Plus |
p38a-PC | 366 | CG5475-PC | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38a-PB | 366 | CG5475-PB | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38a-PA | 366 | CG5475-PA | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38c-PA | 356 | CG33338-PA | 1..349 | 5..353 | 941 | 50.7 | Plus |