Clone BS03211 Report

Search the DGRC for BS03211

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptp38b-RA
Protein status:BS03211.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03211.3prime Sequence

819 bp (710 high quality bases) assembled on 2005-11-30

> BS03211.3prime
ATGGTCTAGAAAGCTTTTACTGCTCTTTGGGCAGGAGCTCAGCGAAGGCG
GCTGTGGGCTTGAAGGCCGTCACCTCGCTGAAGACCATCTCCCGCCACTT
CTCCACCGGCAGCTCGTTCTCCTCGAAGCTCTGGTCGTAGAGCGCGGCGG
TCTGCTCATCGGTTGGATCGTGGTACTTCTCCATGTACGGATGGGCCAGC
GCCTGCTCGGCGGTTATGCGCTTGTCGGCGTCAAGTTCCAGCATCTTCTC
CAGCAAATCGATGGCCAGCGGATTGGCACCGCGGAAGATGTCGCGGAAAT
TGCGGCGCGGCATCACCGGCAGTGAACGAATATAGTTTCTAGCGCTCTCC
GAGGAGATGCGGCTCATGAACTCATCAGCTGGCGTGCCCAGCACTTCCAT
GATGAGGTTCAGCTGATGGATGTGATCGGTTCCAGGGAACAGCGTGCGCC
CAGTCAGCAGCTCAGCCATGATGCAGCCCACCGACCAGATGTCCGCCGTC
TGGTTGTAGTGCATCCAGTTGAGCATGATCTCAGGCGCCCGGTACCATCG
CGTTGCGACGTATCCGGTCATCTCGCTTTCTGCGGGACGGGCCAAACCGA
AATCCAGGATGCGAAGCTCACAGTCCTCGTTTACCGCAATGTTCGATGGC
TTTAGATCACGATGGATGACCCCAGCGCTGTGGATGTACTTCAGACCGCG
CAGGATTTGGTAGACCAGAAACTGGACATGATCATCAAACAGTTTCTGCG
TGCGTATTATGTTGTTCAGATCGGCGTCCATCAAGTGGGTCACCATGTAC
ACTTGCTGGGACTGATCCC

BS03211.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7393-PA 1098 p38b-RA 297..1098 818..17 3960 99.7 Minus
CG5475-PA 1101 Mpk2-RA 565..653 553..465 220 89.8 Minus
CG5475-PB 1101 Mpk2-RB 565..653 553..465 220 89.8 Minus
CG5475-PA 1101 Mpk2-RA 316..365 802..753 150 92 Minus
CG5475-PB 1101 Mpk2-RB 316..365 802..753 150 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 506..1307 818..17 3980 99.8 Minus
p38a-RC 1474 CG5475-RC 496..1185 809..120 930 75.8 Minus
p38a-RB 1634 CG5475-RB 656..1345 809..120 930 75.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13781296..13782097 818..17 3980 99.8 Minus
3R 32079331 3R 24150705..24151394 120..809 930 75.7 Plus
Blast to na_te.dros performed on 2015-02-12 04:50:48 has no hits.

BS03211.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:26 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-PA 296..1098 17..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:40 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7393-PA 296..1098 17..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:09:19 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 505..1307 17..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:39 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 505..1307 17..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:39 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13781295..13782097 17..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:09:19 Download gff for BS03211.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13781295..13782097 17..819 99   Minus

BS03211.5prime Sequence

766 bp (749 high quality bases) assembled on 2005-11-30

> BS03211.5prime
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATG

BS03211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7393-PA 1098 p38b-RA 1..750 17..766 3750 100 Plus
CG5475-PA 1101 Mpk2-RA 565..653 578..666 220 89.8 Plus
CG5475-PB 1101 Mpk2-RB 565..653 578..666 220 89.8 Plus
CG5475-PA 1101 Mpk2-RA 316..365 329..378 150 92 Plus
CG5475-PB 1101 Mpk2-RB 316..365 329..378 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 206..959 13..766 3755 99.9 Plus
p38a-RC 1474 CG5475-RC 215..925 41..751 1255 78.7 Plus
p38a-RB 1634 CG5475-RB 375..1085 41..751 1255 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13780996..13781749 13..766 3755 99.9 Plus
3R 32079331 3R 24150965..24151675 751..41 1215 78.1 Minus
Blast to na_te.dros performed on 2015-02-12 05:51:55 has no hits.

BS03211.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:27 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:42 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7393-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:31:27 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 203..959 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:44 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 203..959 9..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:44 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13780993..13781749 9..766 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:31:27 Download gff for BS03211.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13780993..13781749 9..766 99   Plus

BS03211.complete Sequence

1130 bp (1130 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634695

> BS03211.complete
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGA
CGCCGACAAGCGCATAACCGCCGAGCAGGCGCTGGCCCATCCGTACATGG
AGAAGTACCACGATCCAACCGATGAGCAGACCGCCGCGCTCTACGACCAG
AGCTTCGAGGAGAACGAGCTGCCGGTGGAGAAGTGGCGGGAGATGGTCTT
CAGCGAGGTGACGGCCTTCAAGCCCACAGCCGCCTTCGCTGAGCTCCTGC
CCAAAGAGCAGTAAAAGCTTTCTAGACCAT

BS03211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1098 CG7393-PA 1..1098 17..1114 5490 100 Plus
p38a-RC 1101 CG5475-PC 28..998 41..1011 1270 75.4 Plus
p38a-RB 1101 CG5475-PB 28..998 41..1011 1270 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 206..1307 13..1114 5495 99.9 Plus
p38a-RC 1474 CG5475-RC 215..1185 41..1011 1270 75.4 Plus
p38a-RB 1634 CG5475-RB 375..1345 41..1011 1270 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13780996..13782097 13..1114 5495 99.9 Plus
3R 32079331 3R 24150705..24151675 1011..41 1270 75.4 Minus
Blast to na_te.dros performed on 2014-11-27 11:01:22 has no hits.

BS03211.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:36 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 1..1098 17..1114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:00 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 196..1300 9..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:14 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 210..1305 17..1112 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:36 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 196..1300 9..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:52 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 210..1305 17..1112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:52 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13781000..13782095 17..1112 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:14 Download gff for BS03211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13781000..13782095 17..1112 100   Plus

BS03211.pep Sequence

Translation from 16 to 1113

> BS03211.pep
MSRKMAKFYKLDINRTEWEIPETYQNLQPVGQGAYGQVCKAVVRGTSTKV
AIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDVFHPGQPADSLD
QFQQVYMVTHLMDADLNNIIRTQKLSDDHVQFLVYQILRGLKYIHSAGVI
HRDLKPSNIAVNEDCELRILDFGLARPAESEMTGYVATRWYRAPEIMLNW
MHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADEFM
SRISSESARNYIRSLPVMPRRNFRDIFRGANPLAIDLLEKMLELDADKRI
TAEQALAHPYMEKYHDPTDEQTAALYDQSFEENELPVEKWREMVFSEVTA
FKPTAAFAELLPKEQ*

BS03211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-PA 365 CG7393-PA 1..365 1..365 1909 100 Plus
p38a-PC 366 CG5475-PC 8..362 7..361 1530 80.3 Plus
p38a-PB 366 CG5475-PB 8..362 7..361 1530 80.3 Plus
p38a-PA 366 CG5475-PA 8..362 7..361 1530 80.3 Plus
p38c-PA 356 CG33338-PA 1..349 5..353 941 50.7 Plus