Clone Sequence Records
BS03213.3prime Sequence
813 bp (797 high quality bases) assembled on 2005-11-30
> BS03213.3prime
ATGGTCTAGAAAGCTTTTAACTGCTGATCAGGACCTCTACACAGCTCATA
GCATTGGTTACAAACTTGAAGGGATTCCGGATGGTATCGTTGCGAGGATT
GATCTCCGACAGAGAAACATATGACTTATTCGGACACGATTGCTCTTCAA
AGGATCCACAGATCACCTTATTGGAAATGCAGGAGTCGATGAGTTGCAGC
GCCAGTTCCACTTTGGAGGTAATAGAGTACACCTGGCCAAAGGAGCACTG
CCAGGAGTTCCTAATGCGATTATCAGCCGTGCATTCCGAACTCTTCAGGT
TGGTATTGAAAGTATTCTGTGTGGTGATGGTATACTTATTGGCATCACCA
ATCACCTTGGTTACACAGAGTGTGTAATTTAACTGGGCAGTTGGATGAAG
TTTTAGGCATTGTGCCAAACCATTCTTCACGTTATTTTTATAGTAGTTAT
TCAGGGTGTTGTAGGTGCTCTCAGGTGCATTTAAAATGCCACTAATACTT
TCCTTACACTTGATAATGGAGTCCCTGGCCACGGTGATCGTTGGTATAGT
AACACTATAGTTCTGTACGCATTGTTTGCTCCAGGAATCGATCAGGATAA
TGGGATCCAGGTGAGCGGAGGCTTGTTCCAATTTTAGCTGCATCGAATCT
GCTTGCACATCGAGCGCATTGATTTGCTTCTGAAATAGCTGCTTAAAATT
GGCTAATTCATCTGCCAGCTGTTTGATCTTCGCGTCATATTGCCGCTGAT
TCTGGAGTATATAGAGATCCATGGACTGGGAGCTGTTCTGCGCCTGGCTA
GCCACCAGGCTCA
BS03213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13335-PA | 1233 | CG13335-RA | 437..1233 | 813..17 | 3985 | 100 | Minus |
CG13335-PB | 837 | CG13335-RB | 41..837 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 270..1067 | 813..16 | 3990 | 100 | Minus |
CG42807-RA | 957 | CG13335-RA | 55..852 | 813..16 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572490 | 353..813 | 2305 | 100 | Plus |
2R | 25286936 | 2R | 13571629..13571966 | 16..353 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:53:58 has no hits.
BS03213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:28 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PA | 438..1233 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:43 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PB | 42..837 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:05:28 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 52..853 | 9..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:07 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 56..857 | 9..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:07 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571624..13571965 | 9..352 | 99 | <- | Plus |
2R | 13572030..13572489 | 353..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:05:28 Download gff for
BS03213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459129..9459470 | 9..352 | 99 | <- | Plus |
arm_2R | 9459535..9459994 | 353..812 | 100 | | Plus |
BS03213.5prime Sequence
867 bp (761 high quality bases) assembled on 2005-11-30
> BS03213.5prime
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCCATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
TAAAAGCTTTCTAGACC
BS03213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13335-PA | 1233 | CG13335-RA | 397..1233 | 17..853 | 4160 | 99.8 | Plus |
CG13335-PB | 837 | CG13335-RB | 1..837 | 17..853 | 4160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 222..1067 | 9..854 | 4185 | 99.6 | Plus |
CG42807-RA | 957 | CG13335-RA | 7..852 | 9..854 | 4185 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572538 | 517..9 | 2515 | 99.6 | Minus |
2R | 25286936 | 2R | 13571629..13571966 | 854..517 | 1675 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:05:47 has no hits.
BS03213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:29 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PA | 397..1233 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:44 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:37 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 3..853 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:36 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 7..857 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:36 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571624..13571965 | 518..861 | 98 | <- | Minus |
2R | 13572030..13572538 | 9..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:37 Download gff for
BS03213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459129..9459470 | 518..861 | 98 | <- | Minus |
arm_2R | 9459535..9460043 | 9..517 | 99 | | Minus |
BS03213.complete Sequence
869 bp (869 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634696
> BS03213.complete
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCAATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
TAAAAGCTTTCTAGACCAT
BS03213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 837 | CG42807-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG42807-RA | 837 | CG42807-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 222..1067 | 9..854 | 4200 | 99.8 | Plus |
CG42807-RA | 957 | CG13335-RA | 7..852 | 9..854 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572538 | 517..9 | 2515 | 99.6 | Minus |
2R | 25286936 | 2R | 13571629..13571966 | 854..517 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:43:43 has no hits.
BS03213.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:37 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:02 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1692..2542 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:33 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 11..845 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:37 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1692..2542 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:13 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 15..849 | 17..851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:13 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571632..13571965 | 518..851 | 100 | <- | Minus |
2R | 13572030..13572530 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:33 Download gff for
BS03213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459137..9459470 | 518..851 | 100 | <- | Minus |
arm_2R | 9459535..9460035 | 17..517 | 100 | | Minus |
BS03213.pep Sequence
Translation from 16 to 852
> BS03213.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*
BS03213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-PB | 278 | CG42807-PB | 1..278 | 1..278 | 1415 | 100 | Plus |
CG42807-PA | 278 | CG13335-PA | 1..278 | 1..278 | 1415 | 100 | Plus |