Clone BS03213 Report

Search the DGRC for BS03213

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG42807-RA
Protein status:BS03213.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03213.3prime Sequence

813 bp (797 high quality bases) assembled on 2005-11-30

> BS03213.3prime
ATGGTCTAGAAAGCTTTTAACTGCTGATCAGGACCTCTACACAGCTCATA
GCATTGGTTACAAACTTGAAGGGATTCCGGATGGTATCGTTGCGAGGATT
GATCTCCGACAGAGAAACATATGACTTATTCGGACACGATTGCTCTTCAA
AGGATCCACAGATCACCTTATTGGAAATGCAGGAGTCGATGAGTTGCAGC
GCCAGTTCCACTTTGGAGGTAATAGAGTACACCTGGCCAAAGGAGCACTG
CCAGGAGTTCCTAATGCGATTATCAGCCGTGCATTCCGAACTCTTCAGGT
TGGTATTGAAAGTATTCTGTGTGGTGATGGTATACTTATTGGCATCACCA
ATCACCTTGGTTACACAGAGTGTGTAATTTAACTGGGCAGTTGGATGAAG
TTTTAGGCATTGTGCCAAACCATTCTTCACGTTATTTTTATAGTAGTTAT
TCAGGGTGTTGTAGGTGCTCTCAGGTGCATTTAAAATGCCACTAATACTT
TCCTTACACTTGATAATGGAGTCCCTGGCCACGGTGATCGTTGGTATAGT
AACACTATAGTTCTGTACGCATTGTTTGCTCCAGGAATCGATCAGGATAA
TGGGATCCAGGTGAGCGGAGGCTTGTTCCAATTTTAGCTGCATCGAATCT
GCTTGCACATCGAGCGCATTGATTTGCTTCTGAAATAGCTGCTTAAAATT
GGCTAATTCATCTGCCAGCTGTTTGATCTTCGCGTCATATTGCCGCTGAT
TCTGGAGTATATAGAGATCCATGGACTGGGAGCTGTTCTGCGCCTGGCTA
GCCACCAGGCTCA

BS03213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13335-PA 1233 CG13335-RA 437..1233 813..17 3985 100 Minus
CG13335-PB 837 CG13335-RB 41..837 813..17 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 270..1067 813..16 3990 100 Minus
CG42807-RA 957 CG13335-RA 55..852 813..16 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572490 353..813 2305 100 Plus
2R 25286936 2R 13571629..13571966 16..353 1690 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:53:58 has no hits.

BS03213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:28 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PA 438..1233 17..812 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:43 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PB 42..837 17..812 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:05:28 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 52..853 9..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:07 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 56..857 9..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:07 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13571624..13571965 9..352 99 <- Plus
2R 13572030..13572489 353..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:05:28 Download gff for BS03213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459129..9459470 9..352 99 <- Plus
arm_2R 9459535..9459994 353..812 100   Plus

BS03213.5prime Sequence

867 bp (761 high quality bases) assembled on 2005-11-30

> BS03213.5prime
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCCATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
TAAAAGCTTTCTAGACC

BS03213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13335-PA 1233 CG13335-RA 397..1233 17..853 4160 99.8 Plus
CG13335-PB 837 CG13335-RB 1..837 17..853 4160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 222..1067 9..854 4185 99.6 Plus
CG42807-RA 957 CG13335-RA 7..852 9..854 4185 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572538 517..9 2515 99.6 Minus
2R 25286936 2R 13571629..13571966 854..517 1675 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 20:05:47 has no hits.

BS03213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:29 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PA 397..1233 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:44 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PB 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:37 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 3..853 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:36 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 7..857 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:36 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13571624..13571965 518..861 98 <- Minus
2R 13572030..13572538 9..517 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:37 Download gff for BS03213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459129..9459470 518..861 98 <- Minus
arm_2R 9459535..9460043 9..517 99   Minus

BS03213.complete Sequence

869 bp (869 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634696

> BS03213.complete
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCAATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
TAAAAGCTTTCTAGACCAT

BS03213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 837 CG42807-PB 1..837 17..853 4185 100 Plus
CG42807-RA 837 CG42807-PA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 222..1067 9..854 4200 99.8 Plus
CG42807-RA 957 CG13335-RA 7..852 9..854 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572538 517..9 2515 99.6 Minus
2R 25286936 2R 13571629..13571966 854..517 1690 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:43:43 has no hits.

BS03213.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:37 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:02 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1692..2542 9..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:33 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 11..845 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:37 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1692..2542 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:13 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 15..849 17..851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:13 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13571632..13571965 518..851 100 <- Minus
2R 13572030..13572530 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:33 Download gff for BS03213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459137..9459470 518..851 100 <- Minus
arm_2R 9459535..9460035 17..517 100   Minus

BS03213.pep Sequence

Translation from 16 to 852

> BS03213.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*

BS03213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-PB 278 CG42807-PB 1..278 1..278 1415 100 Plus
CG42807-PA 278 CG13335-PA 1..278 1..278 1415 100 Plus