Clone Sequence Records
BS03215.5prime Sequence
597 bp (596 high quality bases) assembled on 2005-11-30
> BS03215.5prime
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGTAGAAGCTTTCTAGACC
BS03215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14996-PB | 567 | Chd64-RB | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..747 | 17..584 | 2840 | 100 | Plus |
Chd64-RC | 1226 | CG14996-RC | 27..544 | 67..584 | 2575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 413..71 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 4114971..4115144 | 584..411 | 870 | 100 | Minus |
3L | 28110227 | 3L | 4122156..4122209 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:42:13 has no hits.
BS03215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:31 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-PB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:47 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14996-PB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:04:35 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..755 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:39:54 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..755 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:39:54 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114963..4115142 | 413..591 | 97 | <- | Minus |
3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
3L | 4122156..4122209 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:04:35 Download gff for
BS03215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4114963..4115142 | 413..591 | 97 | <- | Minus |
arm_3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
arm_3L | 4122156..4122209 | 17..70 | 100 | | Minus |
BS03215.3prime Sequence
597 bp (596 high quality bases) assembled on 2005-11-30
> BS03215.3prime
ATGGTCTAGAAAGCTTCTACATGTGCCGGGTGTTGCCGAAGTTGATGCCC
GACTGGGTGGCGCCCTTGTTCGATCCGTACTGCAGGGAGATGACGTTGGC
GCCGGCGCGCAGCTGCTCGTCGCTGAAGTTCCTCACATTCTTGTCGGCCT
CCTTGGGGCCAATCGATGGCTTGTTGAAGTTGGAGGCCTTGCGACCCAGC
GACTGCAGGCAGATAACCACCGAGTTCAGATTCTGGCGCTCCCACAGGTC
GACGCTCTGGAAGGTCTCCTGGGTGGGGACACCGAAGTTCTTGGCGCACG
CGAGGAAGGCCGAGATGTTCTCCATGCACTTGAAGGCCATTTTGCTCTCG
TTGATCTTCTTGATGGAGCCGGGCTGCAGGGCGTTGGCCAGCTTGCACAG
GATGACGCCATCCTTGAGCACCTCGAAGAAGTTGTCGGTGTCGCCGGATG
TGTTGATGGGCTCCTCGGTGACGGCCTTGATCCACTCGAGGCTCTCCTGG
GCCAGCTCCTCGCTGTACTTGGAGTTAATTTTGCGCTGGGCCTCGGCGGC
AAAACCAGACTTCGCTGCACGGTTGGACGCCATGTCGACTGATAACT
BS03215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14996-PB | 567 | Chd64-RB | 1..567 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..747 | 583..16 | 2840 | 100 | Minus |
Chd64-RC | 1226 | CG14996-RC | 27..544 | 533..16 | 2575 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 187..529 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 4114971..4115144 | 16..189 | 870 | 100 | Plus |
3L | 28110227 | 3L | 4122156..4122209 | 530..583 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:23:27 has no hits.
BS03215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:30 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-PB | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:46 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14996-PB | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:38 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..755 | 9..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:50 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..755 | 9..583 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:50 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114963..4115142 | 9..187 | 97 | <- | Plus |
3L | 4115305..4115646 | 188..529 | 100 | <- | Plus |
3L | 4122156..4122209 | 530..583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:38 Download gff for
BS03215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4114963..4115142 | 9..187 | 97 | <- | Plus |
arm_3L | 4115305..4115646 | 188..529 | 100 | <- | Plus |
arm_3L | 4122156..4122209 | 530..583 | 100 | | Plus |
BS03215.complete Sequence
599 bp (599 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634697
> BS03215.complete
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGTAGAAGCTTTCTAGACCAT
BS03215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 567 | CG14996-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
Chd64-RC | 528 | CG14996-PC | 12..528 | 67..583 | 2570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..747 | 17..584 | 2840 | 100 | Plus |
Chd64-RC | 1226 | CG14996-RC | 27..544 | 67..584 | 2575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 413..71 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 4114971..4115144 | 584..411 | 870 | 100 | Minus |
3L | 28110227 | 3L | 4122156..4122209 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:09 has no hits.
BS03215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:55 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:29 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 215..790 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:20:27 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..746 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:55 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 215..790 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:31 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..746 | 17..583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:31 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114972..4115142 | 413..583 | 100 | <- | Minus |
3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
3L | 4122156..4122209 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:20:27 Download gff for
BS03215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4114972..4115142 | 413..583 | 100 | <- | Minus |
arm_3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
arm_3L | 4122156..4122209 | 17..70 | 100 | | Minus |
BS03215.pep Sequence
Translation from 16 to 582
> BS03215.pep
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*
BS03215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-PB | 188 | CG14996-PB | 1..188 | 1..188 | 961 | 100 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..175 | 16..188 | 885 | 99.4 | Plus |
CG5023-PA | 169 | CG5023-PA | 5..169 | 24..188 | 379 | 47.9 | Plus |
Mp20-PA | 184 | CG4696-PA | 10..178 | 18..186 | 362 | 44.2 | Plus |
Mp20-PC | 189 | CG4696-PC | 10..178 | 18..186 | 362 | 44.2 | Plus |