Clone BS03215 Report

Search the DGRC for BS03215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptChd64-RB
Protein status:BS03215.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03215.5prime Sequence

597 bp (596 high quality bases) assembled on 2005-11-30

> BS03215.5prime
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGTAGAAGCTTTCTAGACC

BS03215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14996-PB 567 Chd64-RB 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..747 17..584 2840 100 Plus
Chd64-RC 1226 CG14996-RC 27..544 67..584 2575 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 413..71 1715 100 Minus
3L 28110227 3L 4114971..4115144 584..411 870 100 Minus
3L 28110227 3L 4122156..4122209 70..17 270 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:42:13 has no hits.

BS03215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:31 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-PB 1..567 17..583 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:47 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14996-PB 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:04:35 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..755 17..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:39:54 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..755 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:39:54 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4114963..4115142 413..591 97 <- Minus
3L 4115305..4115646 71..412 100 <- Minus
3L 4122156..4122209 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:04:35 Download gff for BS03215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114963..4115142 413..591 97 <- Minus
arm_3L 4115305..4115646 71..412 100 <- Minus
arm_3L 4122156..4122209 17..70 100   Minus

BS03215.3prime Sequence

597 bp (596 high quality bases) assembled on 2005-11-30

> BS03215.3prime
ATGGTCTAGAAAGCTTCTACATGTGCCGGGTGTTGCCGAAGTTGATGCCC
GACTGGGTGGCGCCCTTGTTCGATCCGTACTGCAGGGAGATGACGTTGGC
GCCGGCGCGCAGCTGCTCGTCGCTGAAGTTCCTCACATTCTTGTCGGCCT
CCTTGGGGCCAATCGATGGCTTGTTGAAGTTGGAGGCCTTGCGACCCAGC
GACTGCAGGCAGATAACCACCGAGTTCAGATTCTGGCGCTCCCACAGGTC
GACGCTCTGGAAGGTCTCCTGGGTGGGGACACCGAAGTTCTTGGCGCACG
CGAGGAAGGCCGAGATGTTCTCCATGCACTTGAAGGCCATTTTGCTCTCG
TTGATCTTCTTGATGGAGCCGGGCTGCAGGGCGTTGGCCAGCTTGCACAG
GATGACGCCATCCTTGAGCACCTCGAAGAAGTTGTCGGTGTCGCCGGATG
TGTTGATGGGCTCCTCGGTGACGGCCTTGATCCACTCGAGGCTCTCCTGG
GCCAGCTCCTCGCTGTACTTGGAGTTAATTTTGCGCTGGGCCTCGGCGGC
AAAACCAGACTTCGCTGCACGGTTGGACGCCATGTCGACTGATAACT

BS03215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14996-PB 567 Chd64-RB 1..567 583..17 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..747 583..16 2840 100 Minus
Chd64-RC 1226 CG14996-RC 27..544 533..16 2575 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 187..529 1715 100 Plus
3L 28110227 3L 4114971..4115144 16..189 870 100 Plus
3L 28110227 3L 4122156..4122209 530..583 270 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:23:27 has no hits.

BS03215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:30 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-PB 1..567 17..583 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:46 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14996-PB 1..567 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:38 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..755 9..583 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:50 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..755 9..583 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:50 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4114963..4115142 9..187 97 <- Plus
3L 4115305..4115646 188..529 100 <- Plus
3L 4122156..4122209 530..583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:38 Download gff for BS03215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114963..4115142 9..187 97 <- Plus
arm_3L 4115305..4115646 188..529 100 <- Plus
arm_3L 4122156..4122209 530..583 100   Plus

BS03215.complete Sequence

599 bp (599 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634697

> BS03215.complete
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGTAGAAGCTTTCTAGACCAT

BS03215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 567 CG14996-PB 1..567 17..583 2835 100 Plus
Chd64-RC 528 CG14996-PC 12..528 67..583 2570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..747 17..584 2840 100 Plus
Chd64-RC 1226 CG14996-RC 27..544 67..584 2575 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 413..71 1715 100 Minus
3L 28110227 3L 4114971..4115144 584..411 870 100 Minus
3L 28110227 3L 4122156..4122209 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:37:09 has no hits.

BS03215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:55 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:29 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 215..790 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:20:27 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..746 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:55 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 215..790 17..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:31 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..746 17..583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:31 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4114972..4115142 413..583 100 <- Minus
3L 4115305..4115646 71..412 100 <- Minus
3L 4122156..4122209 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:20:27 Download gff for BS03215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114972..4115142 413..583 100 <- Minus
arm_3L 4115305..4115646 71..412 100 <- Minus
arm_3L 4122156..4122209 17..70 100   Minus

BS03215.pep Sequence

Translation from 16 to 582

> BS03215.pep
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*

BS03215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-PB 188 CG14996-PB 1..188 1..188 961 100 Plus
Chd64-PC 175 CG14996-PC 3..175 16..188 885 99.4 Plus
CG5023-PA 169 CG5023-PA 5..169 24..188 379 47.9 Plus
Mp20-PA 184 CG4696-PA 10..178 18..186 362 44.2 Plus
Mp20-PC 189 CG4696-PC 10..178 18..186 362 44.2 Plus