Clone Sequence Records
BS03217.3prime Sequence
909 bp (810 high quality bases) assembled on 2005-11-30
> BS03217.3prime
ATGGTCTAGAAAGCTTTTATTGCAAAAAGGGATCCAACGTACCGGATTGC
TGGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTT
CGACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCA
GCGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTG
TTTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTT
TACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCT
CAACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTC
CGTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGT
ATCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCAT
CTATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTC
CACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCA
TTGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCT
TGCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCG
CAGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTC
CGCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGG
TGAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCC
GGACACCACTGACCCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTAC
ATTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGCTCCACTTTTG
GTCGGTTTG
BS03217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 818..1710 | 909..17 | 4415 | 99.7 | Minus |
CG8068-PF | 1602 | Su(var)2-10-RF | 710..1602 | 909..17 | 4415 | 99.7 | Minus |
CG8068-PE | 1569 | Su(var)2-10-RE | 677..1569 | 909..17 | 4415 | 99.7 | Minus |
CG8068-PD | 1806 | Su(var)2-10-RD | 818..1686 | 909..41 | 4295 | 99.7 | Minus |
CG8068-PC | 1698 | Su(var)2-10-RC | 710..1578 | 909..41 | 4295 | 99.7 | Minus |
CG8068-PA | 1665 | Su(var)2-10-RA | 677..1545 | 909..41 | 4295 | 99.7 | Minus |
CG8068-PG | 1815 | Su(var)2-10-RG | 710..1576 | 909..43 | 4285 | 99.7 | Minus |
CG8068-PB | 1782 | Su(var)2-10-RB | 677..1543 | 909..43 | 4285 | 99.7 | Minus |
CG8068-PI | 1923 | Su(var)2-10-RI | 818..1684 | 909..43 | 4285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 923..1815 | 909..17 | 4435 | 99.8 | Minus |
Su(var)2-10-RF | 2548 | CG8068-RF | 1249..2141 | 909..17 | 4435 | 99.8 | Minus |
Su(var)2-10-RH | 2943 | CG8068-RH | 1019..1911 | 909..17 | 4435 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9118215..9118449 | 681..447 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 9117930..9118157 | 909..682 | 1110 | 99.1 | Minus |
2R | 25286936 | 2R | 9118900..9119073 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 9118505..9118672 | 447..280 | 840 | 100 | Minus |
2R | 25286936 | 2R | 9118737..9118829 | 281..189 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:05:19 has no hits.
BS03217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:34 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PF | 710..1602 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:51 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PH | 818..1710 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:37:17 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1019..1913 | 13..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:31 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1019..1913 | 13..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:31 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117930..9118157 | 682..909 | 99 | -> | Minus |
2R | 9118215..9118449 | 447..681 | 100 | -> | Minus |
2R | 9118506..9118672 | 280..446 | 100 | -> | Minus |
2R | 9118739..9118827 | 191..279 | 100 | -> | Minus |
2R | 9118900..9119075 | 13..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:37:17 Download gff for
BS03217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5005435..5005662 | 682..909 | 99 | -> | Minus |
arm_2R | 5005720..5005954 | 447..681 | 100 | -> | Minus |
arm_2R | 5006011..5006177 | 280..446 | 100 | -> | Minus |
arm_2R | 5006244..5006332 | 191..279 | 100 | -> | Minus |
arm_2R | 5006405..5006580 | 13..190 | 98 | | Minus |
BS03217.5prime Sequence
838 bp (744 high quality bases) assembled on 2005-11-30
> BS03217.5prime
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTG
BS03217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 142..963 | 17..838 | 4110 | 100 | Plus |
CG8068-PD | 1806 | Su(var)2-10-RD | 142..963 | 17..838 | 4110 | 100 | Plus |
CG8068-PC | 1698 | Su(var)2-10-RC | 34..855 | 17..838 | 4110 | 100 | Plus |
CG8068-PF | 1602 | Su(var)2-10-RF | 34..855 | 17..838 | 4110 | 100 | Plus |
CG8068-PG | 1815 | Su(var)2-10-RG | 34..855 | 17..838 | 4110 | 100 | Plus |
CG8068-PE | 1569 | Su(var)2-10-RE | 1..822 | 17..838 | 4110 | 100 | Plus |
CG8068-PB | 1782 | Su(var)2-10-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
CG8068-PA | 1665 | Su(var)2-10-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
CG8068-PI | 1923 | Su(var)2-10-RI | 142..963 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RM | 2149 | CG8068-RM | 343..1164 | 17..838 | 4110 | 100 | Plus |
Su(var)2-10-RN | 2414 | CG8068-RN | 343..1164 | 17..838 | 4110 | 100 | Plus |
Su(var)2-10-RL | 2150 | CG8068-RL | 343..1164 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117190..9117852 | 17..679 | 3315 | 100 | Plus |
2R | 25286936 | 2R | 9117917..9118075 | 680..838 | 795 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 6613..6641 | 715..687 | 109 | 86.2 | Minus |
BS03217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:35 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PD | 137..963 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:52 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PI | 137..963 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:08 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RK | 568..1394 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:39 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RL | 338..1164 | 10..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:39 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117185..9117852 | 10..679 | 99 | -> | Plus |
2R | 9117917..9118075 | 680..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:08 Download gff for
BS03217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5004690..5005357 | 10..679 | 99 | -> | Plus |
arm_2R | 5005422..5005580 | 680..838 | 100 | | Plus |
BS03217.complete Sequence
1601 bp (1601 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634698
> BS03217.complete
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGC
GGACTACACGCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACT
GCGAAATAGCCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGC
AAGATGAAAATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCA
ATGCTTCGATGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGT
GGAACTGCCCTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATA
GATGGCTACTTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGA
TACTGAGATTCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTAC
GGAGCGAGACGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTT
GAGGTTATATCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGT
AAAGAGGGATTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAA
ACAGTGAAACTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCG
CTGGCTAAGCGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTC
GAACGGCAGCGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCC
AGCAATCCGGTACGTTGGATCCCTTTTTGCAATAAAAGCTTTCTAGACCA
T
BS03217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 1569 | CG8068-PE | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Su(var)2-10-RF | 1602 | CG8068-PF | 34..1602 | 17..1585 | 7845 | 100 | Plus |
Su(var)2-10-RH | 1710 | CG8068-PH | 142..1710 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 247..1815 | 17..1585 | 7845 | 100 | Plus |
Su(var)2-10-RF | 2548 | CG8068-RF | 573..2141 | 17..1585 | 7845 | 100 | Plus |
Su(var)2-10-RH | 2943 | CG8068-RH | 343..1911 | 17..1585 | 7845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117190..9117852 | 17..679 | 3315 | 100 | Plus |
2R | 25286936 | 2R | 9117917..9118157 | 680..920 | 1205 | 100 | Plus |
2R | 25286936 | 2R | 9118215..9118449 | 921..1155 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9118900..9119073 | 1412..1585 | 870 | 100 | Plus |
2R | 25286936 | 2R | 9118505..9118672 | 1155..1322 | 840 | 100 | Plus |
2R | 25286936 | 2R | 9118737..9118829 | 1321..1413 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:17:41 has no hits.
BS03217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:57 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 1..1569 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:27 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 240..1815 | 10..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:05 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 343..1909 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:57 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 240..1815 | 10..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:58 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 343..1909 | 17..1583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:58 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9118900..9119071 | 1412..1583 | 100 | | Plus |
2R | 9117917..9118157 | 680..920 | 100 | -> | Plus |
2R | 9118215..9118449 | 921..1155 | 100 | -> | Plus |
2R | 9118506..9118672 | 1156..1322 | 100 | -> | Plus |
2R | 9118739..9118827 | 1323..1411 | 100 | -> | Plus |
2R | 9117190..9117852 | 17..679 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:05 Download gff for
BS03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5006244..5006332 | 1323..1411 | 100 | -> | Plus |
arm_2R | 5006405..5006576 | 1412..1583 | 100 | | Plus |
arm_2R | 5004695..5005357 | 17..679 | 100 | -> | Plus |
arm_2R | 5005422..5005662 | 680..920 | 100 | -> | Plus |
arm_2R | 5005720..5005954 | 921..1155 | 100 | -> | Plus |
arm_2R | 5006011..5006177 | 1156..1322 | 100 | -> | Plus |
BS03217.pep Sequence
Translation from 16 to 1584
> BS03217.pep
MVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEV
YAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQ
MNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNT
QRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCD
QEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSP
TVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRG
LIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDAS
LYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQL
HQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLS
PAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGG
GQRAYTPAQQPQQSGTLDPFLQ*
BS03217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-PE | 522 | CG8068-PE | 1..522 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PF | 533 | CG8068-PF | 12..533 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PH | 569 | CG8068-PH | 48..569 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PM | 570 | CG8068-PM | 48..562 | 1..515 | 2679 | 100 | Plus |
Su(var)2-10-PA | 554 | CG8068-PA | 1..515 | 1..515 | 2679 | 100 | Plus |