Clone BS03217 Report

Search the DGRC for BS03217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)2-10-RE
Protein status:BS03217.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03217.3prime Sequence

909 bp (810 high quality bases) assembled on 2005-11-30

> BS03217.3prime
ATGGTCTAGAAAGCTTTTATTGCAAAAAGGGATCCAACGTACCGGATTGC
TGGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTT
CGACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCA
GCGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTG
TTTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTT
TACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCT
CAACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTC
CGTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGT
ATCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCAT
CTATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTC
CACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCA
TTGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCT
TGCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCG
CAGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTC
CGCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGG
TGAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCC
GGACACCACTGACCCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTAC
ATTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGCTCCACTTTTG
GTCGGTTTG

BS03217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 818..1710 909..17 4415 99.7 Minus
CG8068-PF 1602 Su(var)2-10-RF 710..1602 909..17 4415 99.7 Minus
CG8068-PE 1569 Su(var)2-10-RE 677..1569 909..17 4415 99.7 Minus
CG8068-PD 1806 Su(var)2-10-RD 818..1686 909..41 4295 99.7 Minus
CG8068-PC 1698 Su(var)2-10-RC 710..1578 909..41 4295 99.7 Minus
CG8068-PA 1665 Su(var)2-10-RA 677..1545 909..41 4295 99.7 Minus
CG8068-PG 1815 Su(var)2-10-RG 710..1576 909..43 4285 99.7 Minus
CG8068-PB 1782 Su(var)2-10-RB 677..1543 909..43 4285 99.7 Minus
CG8068-PI 1923 Su(var)2-10-RI 818..1684 909..43 4285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 923..1815 909..17 4435 99.8 Minus
Su(var)2-10-RF 2548 CG8068-RF 1249..2141 909..17 4435 99.8 Minus
Su(var)2-10-RH 2943 CG8068-RH 1019..1911 909..17 4435 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9118215..9118449 681..447 1175 100 Minus
2R 25286936 2R 9117930..9118157 909..682 1110 99.1 Minus
2R 25286936 2R 9118900..9119073 190..17 870 100 Minus
2R 25286936 2R 9118505..9118672 447..280 840 100 Minus
2R 25286936 2R 9118737..9118829 281..189 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:05:19 has no hits.

BS03217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:34 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PF 710..1602 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:51 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PH 818..1710 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:37:17 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1019..1913 13..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:31 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1019..1913 13..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:31 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117930..9118157 682..909 99 -> Minus
2R 9118215..9118449 447..681 100 -> Minus
2R 9118506..9118672 280..446 100 -> Minus
2R 9118739..9118827 191..279 100 -> Minus
2R 9118900..9119075 13..190 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:37:17 Download gff for BS03217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5005435..5005662 682..909 99 -> Minus
arm_2R 5005720..5005954 447..681 100 -> Minus
arm_2R 5006011..5006177 280..446 100 -> Minus
arm_2R 5006244..5006332 191..279 100 -> Minus
arm_2R 5006405..5006580 13..190 98   Minus

BS03217.5prime Sequence

838 bp (744 high quality bases) assembled on 2005-11-30

> BS03217.5prime
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTG

BS03217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 142..963 17..838 4110 100 Plus
CG8068-PD 1806 Su(var)2-10-RD 142..963 17..838 4110 100 Plus
CG8068-PC 1698 Su(var)2-10-RC 34..855 17..838 4110 100 Plus
CG8068-PF 1602 Su(var)2-10-RF 34..855 17..838 4110 100 Plus
CG8068-PG 1815 Su(var)2-10-RG 34..855 17..838 4110 100 Plus
CG8068-PE 1569 Su(var)2-10-RE 1..822 17..838 4110 100 Plus
CG8068-PB 1782 Su(var)2-10-RB 1..822 17..838 4110 100 Plus
CG8068-PA 1665 Su(var)2-10-RA 1..822 17..838 4110 100 Plus
CG8068-PI 1923 Su(var)2-10-RI 142..963 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RM 2149 CG8068-RM 343..1164 17..838 4110 100 Plus
Su(var)2-10-RN 2414 CG8068-RN 343..1164 17..838 4110 100 Plus
Su(var)2-10-RL 2150 CG8068-RL 343..1164 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117190..9117852 17..679 3315 100 Plus
2R 25286936 2R 9117917..9118075 680..838 795 100 Plus
Blast to na_te.dros performed 2015-02-12 11:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 6613..6641 715..687 109 86.2 Minus

BS03217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:35 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PD 137..963 10..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:52 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PI 137..963 10..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:08 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RK 568..1394 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:39 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RL 338..1164 10..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:39 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117185..9117852 10..679 99 -> Plus
2R 9117917..9118075 680..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:08 Download gff for BS03217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5004690..5005357 10..679 99 -> Plus
arm_2R 5005422..5005580 680..838 100   Plus

BS03217.complete Sequence

1601 bp (1601 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634698

> BS03217.complete
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGC
GGACTACACGCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACT
GCGAAATAGCCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGC
AAGATGAAAATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCA
ATGCTTCGATGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGT
GGAACTGCCCTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATA
GATGGCTACTTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGA
TACTGAGATTCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTAC
GGAGCGAGACGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTT
GAGGTTATATCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGT
AAAGAGGGATTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAA
ACAGTGAAACTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCG
CTGGCTAAGCGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTC
GAACGGCAGCGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCC
AGCAATCCGGTACGTTGGATCCCTTTTTGCAATAAAAGCTTTCTAGACCA
T

BS03217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 1569 CG8068-PE 1..1569 17..1585 7845 100 Plus
Su(var)2-10-RF 1602 CG8068-PF 34..1602 17..1585 7845 100 Plus
Su(var)2-10-RH 1710 CG8068-PH 142..1710 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 247..1815 17..1585 7845 100 Plus
Su(var)2-10-RF 2548 CG8068-RF 573..2141 17..1585 7845 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 343..1911 17..1585 7845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117190..9117852 17..679 3315 100 Plus
2R 25286936 2R 9117917..9118157 680..920 1205 100 Plus
2R 25286936 2R 9118215..9118449 921..1155 1175 100 Plus
2R 25286936 2R 9118900..9119073 1412..1585 870 100 Plus
2R 25286936 2R 9118505..9118672 1155..1322 840 100 Plus
2R 25286936 2R 9118737..9118829 1321..1413 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:17:41 has no hits.

BS03217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:57 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 1..1569 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:27 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 240..1815 10..1589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:05 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 343..1909 17..1583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:57 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 240..1815 10..1589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:58 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 343..1909 17..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:58 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9118900..9119071 1412..1583 100   Plus
2R 9117917..9118157 680..920 100 -> Plus
2R 9118215..9118449 921..1155 100 -> Plus
2R 9118506..9118672 1156..1322 100 -> Plus
2R 9118739..9118827 1323..1411 100 -> Plus
2R 9117190..9117852 17..679 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:05 Download gff for BS03217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5006244..5006332 1323..1411 100 -> Plus
arm_2R 5006405..5006576 1412..1583 100   Plus
arm_2R 5004695..5005357 17..679 100 -> Plus
arm_2R 5005422..5005662 680..920 100 -> Plus
arm_2R 5005720..5005954 921..1155 100 -> Plus
arm_2R 5006011..5006177 1156..1322 100 -> Plus

BS03217.pep Sequence

Translation from 16 to 1584

> BS03217.pep
MVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEV
YAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQ
MNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNT
QRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCD
QEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSP
TVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRG
LIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDAS
LYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQL
HQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLS
PAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGG
GQRAYTPAQQPQQSGTLDPFLQ*

BS03217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-PE 522 CG8068-PE 1..522 1..522 2716 100 Plus
Su(var)2-10-PF 533 CG8068-PF 12..533 1..522 2716 100 Plus
Su(var)2-10-PH 569 CG8068-PH 48..569 1..522 2716 100 Plus
Su(var)2-10-PM 570 CG8068-PM 48..562 1..515 2679 100 Plus
Su(var)2-10-PA 554 CG8068-PA 1..515 1..515 2679 100 Plus