Clone BS03218 Report

Search the DGRC for BS03218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptscw-RA
Protein status:BS03218.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03218.3prime Sequence

864 bp (770 high quality bases) assembled on 2005-11-30

> BS03218.3prime
ATGGTCTAGAAAGCTTCTAATGACATCCGCACTCCTTGGCCACTGCCTTT
TGGTATTTGGTCAGGTCGATGATGTCCTCATTGAGATACCGCAGAATAGT
GATGGCACCCAAAACTGTGGGCACACAGCAGGGCTTGGGCAGATGCGGCT
GCTTCAGGTGCATCAGGGTTTGGACGATGGCGTGGTTGGTGGCATTCATT
TTGGTGCCCAGCGGGAAGTTGCAACCGCCGCCGCAGAAATAGGCCTCGAA
CTTTTTGGGCGCTATCACCCAGTTGTGCATGTGCAGCTCCTTGAAATCCA
CAGTGAAGTTAAGGCGCTCGCAGGACTGCGGTGGTCTGTACAGATCCACG
GGCGGCGGCGGAGGAGGTGGTGGCGAACCACCACCGGCCCTTCGCTTCTC
GAGATCTCTCTTGAAACGAAGTTTCTGTATTTTGACCAGCAGCTCGGGGC
CGTTGAAATAGCCGACAATAAAGGGCTCTAAACTGGTGCGGCTGGCCTGT
GGTGTCACCAATCCAGCTGCAAAGGTGCTCAGCTGGGAATCGCCAATTGA
TATCCTTAGCTCATTTCGACGTTGCAGTCCCTTATTGTGTAACCAATACC
GCAGCGTATCTGTCAAATTGAATTCCAGCCAGCCACGTTGGCTGCTCGTA
GTATTCACAGAGCCCAGGATGCGATAGGAAAAGTCCTGGCGATTGTCCAG
TTTTCGGTACACGGACACGGTAAAGTTCGCCCTTCTGTCCACCAGACTTG
GTTGCTTGTATATCCTGAGCATGGCCTGAACCAAACTCAAATCCACTGGC
ACATCGTTGGTGTTGAAGGTAATGTGCATATCAAGCTCGTTGTTCAGTTG
CTCGGGTTTCAAGC

BS03218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31695-PA 1203 scw-RA 356..1203 864..17 4215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
scw-RB 1590 CG31695-RB 402..1250 864..16 4230 99.9 Minus
scw-RA 1342 CG31695-RA 402..1250 864..16 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19699719..19700567 16..864 4230 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:06:01 has no hits.

BS03218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:36 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
scw-PA 356..1203 17..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:54 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31695-PA 356..1203 17..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:31 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
scw-RA 402..1253 10..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:51 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
scw-RA 402..1253 10..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:51 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19699716..19700567 10..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:31 Download gff for BS03218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19699716..19700567 10..864 99   Plus

BS03218.5prime Sequence

834 bp (677 high quality bases) assembled on 2005-11-30

> BS03218.5prime
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCT

BS03218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31695-PA 1203 scw-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
scw-RB 1590 CG31695-RB 47..864 17..834 4090 100 Plus
scw-RA 1342 CG31695-RA 47..864 17..834 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19700105..19700922 834..17 4090 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:27:05 has no hits.

BS03218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:37 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
scw-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:55 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31695-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:27 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
scw-RA 41..864 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:24 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
scw-RA 41..864 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:24 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19700105..19700928 9..834 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:27 Download gff for BS03218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19700105..19700928 9..834 99   Minus

BS03218.complete Sequence

1235 bp (1235 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634699

> BS03218.complete
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCC
GGTGGTGGTTCGCCACCACCTCCTCCGCCGCCGCCCGTGGATCTGTACAG
ACCACCGCAGTCCTGCGAGCGCCTTAACTTCACTGTGGATTTCAAGGAGC
TGCACATGCACAACTGGGTGATAGCGCCCAAAAAGTTCGAGGCCTATTTC
TGCGGCGGCGGTTGCAACTTCCCGCTGGGCACCAAAATGAATGCCACCAA
CCACGCCATCGTCCAAACCCTGATGCACCTGAAGCAGCCGCATCTGCCCA
AGCCCTGCTGTGTGCCCACAGTTTTGGGTGCCATCACTATTCTGCGGTAT
CTCAATGAGGACATCATCGACCTGACCAAATACCAAAAGGCAGTGGCCAA
GGAGTGCGGATGTCATTAGAAGCTTTCTAGACCAT

BS03218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
scw-RB 1203 CG31695-PB 1..1203 17..1219 6015 100 Plus
scw-RA 1203 CG31695-PA 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
scw-RB 1590 CG31695-RB 47..1250 17..1220 6020 100 Plus
scw-RA 1342 CG31695-RA 47..1250 17..1220 6020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19699719..19700922 1220..17 6020 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:29:37 has no hits.

BS03218.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:03 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 108..1320 9..1226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:38 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 52..1249 22..1219 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:38 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 108..1320 9..1226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:52 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 52..1249 22..1219 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:52 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19699720..19700917 22..1219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:38 Download gff for BS03218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19699720..19700917 22..1219 100   Minus

BS03218.pep Sequence

Translation from 16 to 1218

> BS03218.pep
MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGD
RPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS
NEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAM
LRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEF
NLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF
IVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSC
ERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQ
TLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH
*

BS03218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
scw-PB 400 CG31695-PB 1..400 1..400 2113 100 Plus
scw-PA 400 CG31695-PA 1..400 1..400 2113 100 Plus
gbb-PB 455 CG5562-PB 62..455 36..400 532 33.6 Plus
gbb-PA 455 CG5562-PA 62..455 36..400 532 33.6 Plus
dpp-PA 588 CG9885-PA 451..587 266..399 244 36.5 Plus