Clone Sequence Records
BS03218.3prime Sequence
864 bp (770 high quality bases) assembled on 2005-11-30
> BS03218.3prime
ATGGTCTAGAAAGCTTCTAATGACATCCGCACTCCTTGGCCACTGCCTTT
TGGTATTTGGTCAGGTCGATGATGTCCTCATTGAGATACCGCAGAATAGT
GATGGCACCCAAAACTGTGGGCACACAGCAGGGCTTGGGCAGATGCGGCT
GCTTCAGGTGCATCAGGGTTTGGACGATGGCGTGGTTGGTGGCATTCATT
TTGGTGCCCAGCGGGAAGTTGCAACCGCCGCCGCAGAAATAGGCCTCGAA
CTTTTTGGGCGCTATCACCCAGTTGTGCATGTGCAGCTCCTTGAAATCCA
CAGTGAAGTTAAGGCGCTCGCAGGACTGCGGTGGTCTGTACAGATCCACG
GGCGGCGGCGGAGGAGGTGGTGGCGAACCACCACCGGCCCTTCGCTTCTC
GAGATCTCTCTTGAAACGAAGTTTCTGTATTTTGACCAGCAGCTCGGGGC
CGTTGAAATAGCCGACAATAAAGGGCTCTAAACTGGTGCGGCTGGCCTGT
GGTGTCACCAATCCAGCTGCAAAGGTGCTCAGCTGGGAATCGCCAATTGA
TATCCTTAGCTCATTTCGACGTTGCAGTCCCTTATTGTGTAACCAATACC
GCAGCGTATCTGTCAAATTGAATTCCAGCCAGCCACGTTGGCTGCTCGTA
GTATTCACAGAGCCCAGGATGCGATAGGAAAAGTCCTGGCGATTGTCCAG
TTTTCGGTACACGGACACGGTAAAGTTCGCCCTTCTGTCCACCAGACTTG
GTTGCTTGTATATCCTGAGCATGGCCTGAACCAAACTCAAATCCACTGGC
ACATCGTTGGTGTTGAAGGTAATGTGCATATCAAGCTCGTTGTTCAGTTG
CTCGGGTTTCAAGC
BS03218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31695-PA | 1203 | scw-RA | 356..1203 | 864..17 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scw-RB | 1590 | CG31695-RB | 402..1250 | 864..16 | 4230 | 99.9 | Minus |
scw-RA | 1342 | CG31695-RA | 402..1250 | 864..16 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19699719..19700567 | 16..864 | 4230 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:06:01 has no hits.
BS03218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:36 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-PA | 356..1203 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:54 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31695-PA | 356..1203 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:31 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 402..1253 | 10..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:51 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 402..1253 | 10..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:51 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19699716..19700567 | 10..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:31 Download gff for
BS03218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19699716..19700567 | 10..864 | 99 | | Plus |
BS03218.5prime Sequence
834 bp (677 high quality bases) assembled on 2005-11-30
> BS03218.5prime
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCT
BS03218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31695-PA | 1203 | scw-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scw-RB | 1590 | CG31695-RB | 47..864 | 17..834 | 4090 | 100 | Plus |
scw-RA | 1342 | CG31695-RA | 47..864 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19700105..19700922 | 834..17 | 4090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:27:05 has no hits.
BS03218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:37 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:34:55 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31695-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:27 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 41..864 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:24 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 41..864 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:24 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19700105..19700928 | 9..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:27 Download gff for
BS03218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19700105..19700928 | 9..834 | 99 | | Minus |
BS03218.complete Sequence
1235 bp (1235 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634699
> BS03218.complete
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCC
GGTGGTGGTTCGCCACCACCTCCTCCGCCGCCGCCCGTGGATCTGTACAG
ACCACCGCAGTCCTGCGAGCGCCTTAACTTCACTGTGGATTTCAAGGAGC
TGCACATGCACAACTGGGTGATAGCGCCCAAAAAGTTCGAGGCCTATTTC
TGCGGCGGCGGTTGCAACTTCCCGCTGGGCACCAAAATGAATGCCACCAA
CCACGCCATCGTCCAAACCCTGATGCACCTGAAGCAGCCGCATCTGCCCA
AGCCCTGCTGTGTGCCCACAGTTTTGGGTGCCATCACTATTCTGCGGTAT
CTCAATGAGGACATCATCGACCTGACCAAATACCAAAAGGCAGTGGCCAA
GGAGTGCGGATGTCATTAGAAGCTTTCTAGACCAT
BS03218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scw-RB | 1203 | CG31695-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
scw-RA | 1203 | CG31695-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scw-RB | 1590 | CG31695-RB | 47..1250 | 17..1220 | 6020 | 100 | Plus |
scw-RA | 1342 | CG31695-RA | 47..1250 | 17..1220 | 6020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19699719..19700922 | 1220..17 | 6020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:37 has no hits.
BS03218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:03 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 108..1320 | 9..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:38 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 52..1249 | 22..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:38 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 108..1320 | 9..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:52 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scw-RA | 52..1249 | 22..1219 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:52 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19699720..19700917 | 22..1219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:38 Download gff for
BS03218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19699720..19700917 | 22..1219 | 100 | | Minus |
BS03218.pep Sequence
Translation from 16 to 1218
> BS03218.pep
MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGD
RPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS
NEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAM
LRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEF
NLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF
IVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSC
ERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQ
TLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH
*
BS03218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scw-PB | 400 | CG31695-PB | 1..400 | 1..400 | 2113 | 100 | Plus |
scw-PA | 400 | CG31695-PA | 1..400 | 1..400 | 2113 | 100 | Plus |
gbb-PB | 455 | CG5562-PB | 62..455 | 36..400 | 532 | 33.6 | Plus |
gbb-PA | 455 | CG5562-PA | 62..455 | 36..400 | 532 | 33.6 | Plus |
dpp-PA | 588 | CG9885-PA | 451..587 | 266..399 | 244 | 36.5 | Plus |