Clone BS03221 Report

Search the DGRC for BS03221

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptfz-RA
Protein status:BS03221.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03221.3prime Sequence

864 bp (769 high quality bases) assembled on 2005-11-30

> BS03221.3prime
ATGGTCTAGAAAGCTTCTAGACGTACGCCTGCGCCCGGGTCCGGGGCTCC
TTGCCCTGCAACCTCTCCACGAAGTTCCGCCAGCTGACCATCGTCTTGCT
GGAATACAGCCAAACGCTGGAAGTGACCCCCACCAGCATGGAGCAAAGGT
ACTTGACCATAAAGATCTGAAAGATGGGGCGGGCTTCTGGAGATCCCGGC
GCCCTGGCTGCCGGGCACGGAATTGAGAAGGGCTTGCAGATATCCCTGTG
CCATTGGATCATCCACTCGTCAAAGTTGTAGTACTCGTAGAACAAGCAGC
CCAGTAATCCCACGGCGGGCAGAATGAAAAGTCCAGAGAAGAAACCTATT
CGCAACATCAGGCGCTCCAGTTTGTCTGTCCTCTTTCCGTCCGTTTTCAT
AACTGTCCGGATCCGGAAAAGCGAAATAAATCCGGCCAGCAGGAATAGTG
CTCCGATCGAGAGATAAATGCAGAGTGGAAGGATCAGGAACGCGCCCAGG
GAGTGCGTGTCCAGCTGGCCCACGAAACAAACGCCAGAAAGGATGTCACC
TTCAACTTTAGCCAGGGCCAGAACGGAGATGGTCTGAAGGGCGGGCACCG
CCCAGGCAACCAGGTGGAATAAGTGCGACTTGTTCTCAATCGCCTCGTGG
CCCCATTTGAGGCCAGCGGCCAAAAACCAGGCGAATGCCAGACACGACCA
CCACGCGAAGGCCGCCATGCAGCAGAAGTAGAGTGCCATGAATAAAACCG
TGCAGGACGTGGTTTGTCGGTGGCCCTGGGTGATGGTGGACATCATCTGC
AGGCGGGCGAGTTTGACGGGCGGCGGAAATGGTTCGCGGAACGACACAGA
GTCGCCCGCTCCCA

BS03221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17697-PA 1746 fz-RA 899..1746 864..17 4190 99.7 Minus
CG17697-PB 1248 fz-RB 899..1215 864..548 1535 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 1611..2458 864..17 4210 99.8 Minus
fz-RA 3817 CG17697-RA 1611..2458 864..17 4210 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14366746..14367280 551..17 2675 100 Minus
3L 28110227 3L 14317109..14317339 778..548 1155 100 Minus
3L 28110227 3L 14311967..14312056 864..775 420 97.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:30:06 has no hits.

BS03221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:21:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:02 Download gff for BS03221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17697-PA 900..1746 17..863 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:23:19 Download gff for BS03221.3prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1612..2458 17..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:09 Download gff for BS03221.3prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1612..2458 17..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:09 Download gff for BS03221.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14311968..14312055 776..863 97 -> Minus
3L 14317112..14317337 550..775 100 -> Minus
3L 14366748..14367280 17..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:23:19 Download gff for BS03221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14305068..14305155 776..863 97 -> Minus
arm_3L 14310212..14310437 550..775 100 -> Minus
arm_3L 14359848..14360380 17..549 100   Minus

BS03221.5prime Sequence

802 bp (681 high quality bases) assembled on 2005-11-30

> BS03221.5prime
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGCCTGTGTAGCCAGCTGCT
TG

BS03221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17697-PB 1248 fz-RB 1..786 17..802 3905 99.8 Plus
CG17697-PA 1746 fz-RA 1..786 17..802 3905 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 713..1498 17..802 3915 99.9 Plus
fz-RA 3817 CG17697-RA 713..1498 17..802 3915 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14275055..14275727 17..689 3365 100 Plus
3L 28110227 3L 14304895..14305010 687..802 565 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 05:53:12 has no hits.

BS03221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:21:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:04 Download gff for BS03221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17697-PA 1..786 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:31:40 Download gff for BS03221.5prime
Subject Subject Range Query Range Percent Splice Strand
fz-RB 713..1498 17..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:45 Download gff for BS03221.5prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..1498 17..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:45 Download gff for BS03221.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14275055..14275726 17..688 100 -> Plus
3L 14304897..14305010 689..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:31:40 Download gff for BS03221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14268155..14268826 17..688 100 -> Plus
arm_3L 14297997..14298110 689..802 99   Plus

BS03221.complete Sequence

1778 bp (1778 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634700

> BS03221.complete
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGTCTGTGTAGCCAGCTGCT
TGTTTACGGTGCTCACCTTCTTGATTGACTCGTCGCGTTTTCGCTACCCG
GAGAGGGCCATTGTCTTCTTGGCCGTTTGCTACTTGGTAGTTGGATGTGC
CTACGTGGCGGGACTGGGAGCGGGCGACTCTGTGTCGTGCCGCGAACCAT
TTCCGCCGCCCGTCAAACTCGGCCGCCTGCAGATGATGTCCACCATCACC
CAGGGCCACCGACAAACCACGTCCTGCACGGTTTTATTCATGGCACTCTA
CTTCTGCTGCATGGCGGCCTTCGCGTGGTGGTCGTGTCTGGCATTCGCCT
GGTTTTTGGCCGCTGGCCTCAAATGGGGCCACGAGGCGATTGAGAACAAG
TCGCACTTATTCCACCTGGTTGCCTGGGCGGTGCCCGCCCTTCAGACCAT
CTCCGTTCTGGCCCTGGCTAAAGTTGAAGGTGACATCCTTTCTGGCGTTT
GTTTCGTGGGCCAGCTGGACACGCACTCCCTGGGCGCGTTCCTGATCCTT
CCACTCTGCATTTATCTCTCGATCGGAGCACTATTCCTGCTGGCCGGATT
TATTTCGCTTTTCCGGATCCGGACAGTTATGAAAACGGACGGAAAGAGGA
CAGACAAACTGGAGCGCCTGATGTTGCGAATAGGTTTCTTCTCTGGACTT
TTCATTCTGCCCGCCGTGGGATTACTGGGCTGCTTGTTCTACGAGTACTA
CAACTTTGACGAGTGGATGATCCAATGGCACAGGGATATCTGCAAGCCCT
TCTCAATTCCGTGCCCGGCAGCCAGGGCGCCGGGATCTCCAGAAGCCCGC
CCCATCTTTCAGATCTTTATGGTCAAGTACCTTTGCTCCATGCTGGTGGG
GGTCACTTCCAGCGTTTGGCTGTATTCCAGCAAGACGATGGTCAGCTGGC
GGAACTTCGTGGAGAGGTTGCAGGGCAAGGAGCCCCGGACCCGGGCGCAG
GCGTACGTCTAGAAGCTTTCTAGACCAT

BS03221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 1839 CG17697-PC 1..1746 17..1762 8730 100 Plus
fz-RA 1746 CG17697-PA 1..1746 17..1762 8730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 713..2458 17..1762 8730 100 Plus
fz-RA 3817 CG17697-RA 713..2458 17..1762 8730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14275055..14275727 17..689 3365 100 Plus
3L 28110227 3L 14366746..14367280 1228..1762 2675 100 Plus
3L 28110227 3L 14317109..14317339 1001..1231 1155 100 Plus
3L 28110227 3L 14311860..14312056 808..1004 985 100 Plus
3L 28110227 3L 14304895..14305018 687..810 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:35:54 has no hits.

BS03221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:25 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1..1746 17..1762 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:41 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 681..2426 17..1762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:14 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..2458 17..1762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:25 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 681..2426 17..1762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:53 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..2458 17..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:53 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14275055..14275726 17..688 100 -> Plus
3L 14304897..14305016 689..808 100 -> Plus
3L 14311861..14312055 809..1003 100 -> Plus
3L 14317112..14317337 1004..1229 100 -> Plus
3L 14366748..14367280 1230..1762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:14 Download gff for BS03221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14310212..14310437 1004..1229 100 -> Plus
arm_3L 14268155..14268826 17..688 100 -> Plus
arm_3L 14297997..14298116 689..808 100 -> Plus
arm_3L 14304961..14305155 809..1003 100 -> Plus
arm_3L 14359848..14360380 1230..1762 100   Plus

BS03221.pep Sequence

Translation from 16 to 1761

> BS03221.pep
MWRQILFILPTLIQGVQRYDQSPLDASPYYRSGGGLMASSGTELDGLPHH
NRCEPITISICKNIPYNMTIMPNLIGHTKQEEAGLEVHQFAPLVKIGCSD
DLQLFLCSLYVPVCTILERPIPPCRSLCESARVCEKLMKTYNFNWPENLE
CSKFPVHGGEDLCVAENTTSSASTAATPTRSVAKVTTRKHQTGVESPHRN
IGFVCPVQLKTPLGMGYELKVGGKDLHDCGAPCHAMFFPERERTVLRYWV
GSWAAVCVASCLFTVLTFLIDSSRFRYPERAIVFLAVCYLVVGCAYVAGL
GAGDSVSCREPFPPPVKLGRLQMMSTITQGHRQTTSCTVLFMALYFCCMA
AFAWWSCLAFAWFLAAGLKWGHEAIENKSHLFHLVAWAVPALQTISVLAL
AKVEGDILSGVCFVGQLDTHSLGAFLILPLCIYLSIGALFLLAGFISLFR
IRTVMKTDGKRTDKLERLMLRIGFFSGLFILPAVGLLGCLFYEYYNFDEW
MIQWHRDICKPFSIPCPAARAPGSPEARPIFQIFMVKYLCSMLVGVTSSV
WLYSSKTMVSWRNFVERLQGKEPRTRAQAYV*

BS03221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
fz-PC 612 CG17697-PC 1..581 1..581 3128 100 Plus
fz-PA 581 CG17697-PA 1..581 1..581 3128 100 Plus
fz2-PG 694 CG9739-PG 63..629 52..577 999 37.5 Plus
fz2-PE 694 CG9739-PE 63..629 52..577 999 37.5 Plus
fz2-PD 694 CG9739-PD 63..629 52..577 999 37.5 Plus