Clone Sequence Records
BS03221.3prime Sequence
864 bp (769 high quality bases) assembled on 2005-11-30
> BS03221.3prime
ATGGTCTAGAAAGCTTCTAGACGTACGCCTGCGCCCGGGTCCGGGGCTCC
TTGCCCTGCAACCTCTCCACGAAGTTCCGCCAGCTGACCATCGTCTTGCT
GGAATACAGCCAAACGCTGGAAGTGACCCCCACCAGCATGGAGCAAAGGT
ACTTGACCATAAAGATCTGAAAGATGGGGCGGGCTTCTGGAGATCCCGGC
GCCCTGGCTGCCGGGCACGGAATTGAGAAGGGCTTGCAGATATCCCTGTG
CCATTGGATCATCCACTCGTCAAAGTTGTAGTACTCGTAGAACAAGCAGC
CCAGTAATCCCACGGCGGGCAGAATGAAAAGTCCAGAGAAGAAACCTATT
CGCAACATCAGGCGCTCCAGTTTGTCTGTCCTCTTTCCGTCCGTTTTCAT
AACTGTCCGGATCCGGAAAAGCGAAATAAATCCGGCCAGCAGGAATAGTG
CTCCGATCGAGAGATAAATGCAGAGTGGAAGGATCAGGAACGCGCCCAGG
GAGTGCGTGTCCAGCTGGCCCACGAAACAAACGCCAGAAAGGATGTCACC
TTCAACTTTAGCCAGGGCCAGAACGGAGATGGTCTGAAGGGCGGGCACCG
CCCAGGCAACCAGGTGGAATAAGTGCGACTTGTTCTCAATCGCCTCGTGG
CCCCATTTGAGGCCAGCGGCCAAAAACCAGGCGAATGCCAGACACGACCA
CCACGCGAAGGCCGCCATGCAGCAGAAGTAGAGTGCCATGAATAAAACCG
TGCAGGACGTGGTTTGTCGGTGGCCCTGGGTGATGGTGGACATCATCTGC
AGGCGGGCGAGTTTGACGGGCGGCGGAAATGGTTCGCGGAACGACACAGA
GTCGCCCGCTCCCA
BS03221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17697-PA | 1746 | fz-RA | 899..1746 | 864..17 | 4190 | 99.7 | Minus |
CG17697-PB | 1248 | fz-RB | 899..1215 | 864..548 | 1535 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 1611..2458 | 864..17 | 4210 | 99.8 | Minus |
fz-RA | 3817 | CG17697-RA | 1611..2458 | 864..17 | 4210 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14366746..14367280 | 551..17 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14317109..14317339 | 778..548 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 14311967..14312056 | 864..775 | 420 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:30:06 has no hits.
BS03221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:21:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:02 Download gff for
BS03221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17697-PA | 900..1746 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:23:19 Download gff for
BS03221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1612..2458 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:09 Download gff for
BS03221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1612..2458 | 17..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:09 Download gff for
BS03221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14311968..14312055 | 776..863 | 97 | -> | Minus |
3L | 14317112..14317337 | 550..775 | 100 | -> | Minus |
3L | 14366748..14367280 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:23:19 Download gff for
BS03221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14305068..14305155 | 776..863 | 97 | -> | Minus |
arm_3L | 14310212..14310437 | 550..775 | 100 | -> | Minus |
arm_3L | 14359848..14360380 | 17..549 | 100 | | Minus |
BS03221.5prime Sequence
802 bp (681 high quality bases) assembled on 2005-11-30
> BS03221.5prime
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGCCTGTGTAGCCAGCTGCT
TG
BS03221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17697-PB | 1248 | fz-RB | 1..786 | 17..802 | 3905 | 99.8 | Plus |
CG17697-PA | 1746 | fz-RA | 1..786 | 17..802 | 3905 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 713..1498 | 17..802 | 3915 | 99.9 | Plus |
fz-RA | 3817 | CG17697-RA | 713..1498 | 17..802 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14275055..14275727 | 17..689 | 3365 | 100 | Plus |
3L | 28110227 | 3L | 14304895..14305010 | 687..802 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:53:12 has no hits.
BS03221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:21:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:04 Download gff for
BS03221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17697-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:31:40 Download gff for
BS03221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RB | 713..1498 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:45 Download gff for
BS03221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..1498 | 17..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:45 Download gff for
BS03221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14275055..14275726 | 17..688 | 100 | -> | Plus |
3L | 14304897..14305010 | 689..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:31:40 Download gff for
BS03221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14268155..14268826 | 17..688 | 100 | -> | Plus |
arm_3L | 14297997..14298110 | 689..802 | 99 | | Plus |
BS03221.complete Sequence
1778 bp (1778 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634700
> BS03221.complete
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGTCTGTGTAGCCAGCTGCT
TGTTTACGGTGCTCACCTTCTTGATTGACTCGTCGCGTTTTCGCTACCCG
GAGAGGGCCATTGTCTTCTTGGCCGTTTGCTACTTGGTAGTTGGATGTGC
CTACGTGGCGGGACTGGGAGCGGGCGACTCTGTGTCGTGCCGCGAACCAT
TTCCGCCGCCCGTCAAACTCGGCCGCCTGCAGATGATGTCCACCATCACC
CAGGGCCACCGACAAACCACGTCCTGCACGGTTTTATTCATGGCACTCTA
CTTCTGCTGCATGGCGGCCTTCGCGTGGTGGTCGTGTCTGGCATTCGCCT
GGTTTTTGGCCGCTGGCCTCAAATGGGGCCACGAGGCGATTGAGAACAAG
TCGCACTTATTCCACCTGGTTGCCTGGGCGGTGCCCGCCCTTCAGACCAT
CTCCGTTCTGGCCCTGGCTAAAGTTGAAGGTGACATCCTTTCTGGCGTTT
GTTTCGTGGGCCAGCTGGACACGCACTCCCTGGGCGCGTTCCTGATCCTT
CCACTCTGCATTTATCTCTCGATCGGAGCACTATTCCTGCTGGCCGGATT
TATTTCGCTTTTCCGGATCCGGACAGTTATGAAAACGGACGGAAAGAGGA
CAGACAAACTGGAGCGCCTGATGTTGCGAATAGGTTTCTTCTCTGGACTT
TTCATTCTGCCCGCCGTGGGATTACTGGGCTGCTTGTTCTACGAGTACTA
CAACTTTGACGAGTGGATGATCCAATGGCACAGGGATATCTGCAAGCCCT
TCTCAATTCCGTGCCCGGCAGCCAGGGCGCCGGGATCTCCAGAAGCCCGC
CCCATCTTTCAGATCTTTATGGTCAAGTACCTTTGCTCCATGCTGGTGGG
GGTCACTTCCAGCGTTTGGCTGTATTCCAGCAAGACGATGGTCAGCTGGC
GGAACTTCGTGGAGAGGTTGCAGGGCAAGGAGCCCCGGACCCGGGCGCAG
GCGTACGTCTAGAAGCTTTCTAGACCAT
BS03221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 1839 | CG17697-PC | 1..1746 | 17..1762 | 8730 | 100 | Plus |
fz-RA | 1746 | CG17697-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 713..2458 | 17..1762 | 8730 | 100 | Plus |
fz-RA | 3817 | CG17697-RA | 713..2458 | 17..1762 | 8730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14275055..14275727 | 17..689 | 3365 | 100 | Plus |
3L | 28110227 | 3L | 14366746..14367280 | 1228..1762 | 2675 | 100 | Plus |
3L | 28110227 | 3L | 14317109..14317339 | 1001..1231 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 14311860..14312056 | 808..1004 | 985 | 100 | Plus |
3L | 28110227 | 3L | 14304895..14305018 | 687..810 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:35:54 has no hits.
BS03221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:25 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1..1746 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:41 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 681..2426 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:14 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..2458 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:25 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 681..2426 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:59:53 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..2458 | 17..1762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 08:59:53 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14275055..14275726 | 17..688 | 100 | -> | Plus |
3L | 14304897..14305016 | 689..808 | 100 | -> | Plus |
3L | 14311861..14312055 | 809..1003 | 100 | -> | Plus |
3L | 14317112..14317337 | 1004..1229 | 100 | -> | Plus |
3L | 14366748..14367280 | 1230..1762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:14 Download gff for
BS03221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14310212..14310437 | 1004..1229 | 100 | -> | Plus |
arm_3L | 14268155..14268826 | 17..688 | 100 | -> | Plus |
arm_3L | 14297997..14298116 | 689..808 | 100 | -> | Plus |
arm_3L | 14304961..14305155 | 809..1003 | 100 | -> | Plus |
arm_3L | 14359848..14360380 | 1230..1762 | 100 | | Plus |
BS03221.pep Sequence
Translation from 16 to 1761
> BS03221.pep
MWRQILFILPTLIQGVQRYDQSPLDASPYYRSGGGLMASSGTELDGLPHH
NRCEPITISICKNIPYNMTIMPNLIGHTKQEEAGLEVHQFAPLVKIGCSD
DLQLFLCSLYVPVCTILERPIPPCRSLCESARVCEKLMKTYNFNWPENLE
CSKFPVHGGEDLCVAENTTSSASTAATPTRSVAKVTTRKHQTGVESPHRN
IGFVCPVQLKTPLGMGYELKVGGKDLHDCGAPCHAMFFPERERTVLRYWV
GSWAAVCVASCLFTVLTFLIDSSRFRYPERAIVFLAVCYLVVGCAYVAGL
GAGDSVSCREPFPPPVKLGRLQMMSTITQGHRQTTSCTVLFMALYFCCMA
AFAWWSCLAFAWFLAAGLKWGHEAIENKSHLFHLVAWAVPALQTISVLAL
AKVEGDILSGVCFVGQLDTHSLGAFLILPLCIYLSIGALFLLAGFISLFR
IRTVMKTDGKRTDKLERLMLRIGFFSGLFILPAVGLLGCLFYEYYNFDEW
MIQWHRDICKPFSIPCPAARAPGSPEARPIFQIFMVKYLCSMLVGVTSSV
WLYSSKTMVSWRNFVERLQGKEPRTRAQAYV*
BS03221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-PC | 612 | CG17697-PC | 1..581 | 1..581 | 3128 | 100 | Plus |
fz-PA | 581 | CG17697-PA | 1..581 | 1..581 | 3128 | 100 | Plus |
fz2-PG | 694 | CG9739-PG | 63..629 | 52..577 | 999 | 37.5 | Plus |
fz2-PE | 694 | CG9739-PE | 63..629 | 52..577 | 999 | 37.5 | Plus |
fz2-PD | 694 | CG9739-PD | 63..629 | 52..577 | 999 | 37.5 | Plus |